EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000004517 (Gene tree)
Gene ID: 535018
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 73295 bases
Position: chr28:7196026-7269320
Accession: 11568
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000059743	SpoU_methylase	PF00588.19	3e-30	1	1
ENSBTAP00000062968	SpoU_methylase	PF00588.19	3.1e-30	1	1
ENSBTAP00000005936	SpoU_methylase	PF00588.19	3.2e-30	1	1
ENSBTAP00000061144	SpoU_methylase	PF00588.19	3.4e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000005936	TARBP1-201	4866	-	ENSBTAP00000005936	1621 (aa)	-	F1N6T6
ENSBTAT00000080960	TARBP1-202	4749	-	ENSBTAP00000062968	1582 (aa)	-	-
ENSBTAT00000085157	TARBP1-203	4548	-	ENSBTAP00000059743	1515 (aa)	-	-
ENSBTAT00000087408	TARBP1-204	4542	-	ENSBTAP00000061144	1513 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000004517's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000004517's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000004517	TARBP1	99	84.644	ENSG00000059588	TARBP1	99	84.337	Homo_sapiens
ENSBTAG00000004517	TARBP1	99	54.247	ENSAPOG00000016419	si:dkey-85a20.4	85	54.247	Acanthochromis_polyacanthus
ENSBTAG00000004517	TARBP1	84	85.777	ENSAMEG00000003359	TARBP1	99	85.777	Ailuropoda_melanoleuca
ENSBTAG00000004517	TARBP1	99	53.696	ENSATEG00000020266	si:dkey-85a20.4	84	53.696	Anabas_testudineus
ENSBTAG00000004517	TARBP1	82	75.937	ENSAPLG00000007666	TARBP1	94	75.937	Anas_platyrhynchos
ENSBTAG00000004517	TARBP1	98	65.708	ENSACAG00000001142	TARBP1	91	65.244	Anolis_carolinensis
ENSBTAG00000004517	TARBP1	92	87.952	ENSANAG00000022031	TARBP1	99	77.150	Aotus_nancymaae
ENSBTAG00000004517	TARBP1	99	83.477	ENSCJAG00000018155	TARBP1	99	83.231	Callithrix_jacchus
ENSBTAG00000004517	TARBP1	88	86.142	ENSCAFG00000011533	TARBP1	100	86.142	Canis_familiaris
ENSBTAG00000004517	TARBP1	99	85.265	ENSCAFG00020027141	TARBP1	100	84.850	Canis_lupus_dingo
ENSBTAG00000004517	TARBP1	99	95.978	ENSCHIG00000011437	TARBP1	99	95.978	Capra_hircus
ENSBTAG00000004517	TARBP1	81	84.832	ENSTSYG00000010382	TARBP1	97	84.680	Carlito_syrichta
ENSBTAG00000004517	TARBP1	77	71.743	ENSCAPG00000010831	TARBP1	100	68.652	Cavia_aperea
ENSBTAG00000004517	TARBP1	99	75.875	ENSCPOG00000013995	TARBP1	100	74.830	Cavia_porcellus
ENSBTAG00000004517	TARBP1	99	83.968	ENSCCAG00000037278	TARBP1	99	83.784	Cebus_capucinus
ENSBTAG00000004517	TARBP1	99	84.525	ENSCATG00000011754	TARBP1	99	84.525	Cercocebus_atys
ENSBTAG00000004517	TARBP1	83	88.889	ENSCLAG00000003655	TARBP1	99	88.889	Chinchilla_lanigera
ENSBTAG00000004517	TARBP1	79	85.547	ENSCSAG00000010100	TARBP1	99	85.547	Chlorocebus_sabaeus
ENSBTAG00000004517	TARBP1	93	75.362	ENSCPBG00000005587	TARBP1	90	75.362	Chrysemys_picta_bellii
ENSBTAG00000004517	TARBP1	84	85.599	ENSCANG00000034343	TARBP1	99	85.599	Colobus_angolensis_palliatus
ENSBTAG00000004517	TARBP1	99	77.344	ENSCGRG00001016690	Tarbp1	99	72.761	Cricetulus_griseus_chok1gshd
ENSBTAG00000004517	TARBP1	91	77.344	ENSCGRG00000016893	Tarbp1	99	75.069	Cricetulus_griseus_crigri
ENSBTAG00000004517	TARBP1	99	49.902	ENSCSEG00000005255	si:dkey-85a20.4	85	54.449	Cynoglossus_semilaevis
ENSBTAG00000004517	TARBP1	98	52.096	ENSDARG00000079055	si:dkey-85a20.4	99	53.368	Danio_rerio
ENSBTAG00000004517	TARBP1	99	84.872	ENSDNOG00000008637	TARBP1	99	82.275	Dasypus_novemcinctus
ENSBTAG00000004517	TARBP1	80	73.421	ENSDORG00000007984	Tarbp1	100	73.575	Dipodomys_ordii
ENSBTAG00000004517	TARBP1	99	87.843	ENSEASG00005000252	TARBP1	100	87.186	Equus_asinus_asinus
ENSBTAG00000004517	TARBP1	99	87.647	ENSECAG00000023673	TARBP1	100	88.035	Equus_caballus
ENSBTAG00000004517	TARBP1	98	52.372	ENSELUG00000012193	si:dkey-85a20.4	86	44.554	Esox_lucius
ENSBTAG00000004517	TARBP1	99	83.303	ENSFCAG00000014183	TARBP1	100	83.313	Felis_catus
ENSBTAG00000004517	TARBP1	78	75.149	ENSFALG00000013565	TARBP1	93	75.049	Ficedula_albicollis
ENSBTAG00000004517	TARBP1	79	75.672	ENSFDAG00000001308	TARBP1	99	75.595	Fukomys_damarensis
ENSBTAG00000004517	TARBP1	98	51.414	ENSFHEG00000007565	si:dkey-85a20.4	93	54.875	Fundulus_heteroclitus
ENSBTAG00000004517	TARBP1	81	50.383	ENSGMOG00000004549	si:dkey-85a20.4	98	43.188	Gadus_morhua
ENSBTAG00000004517	TARBP1	99	73.161	ENSGALG00000011000	TARBP1	95	73.161	Gallus_gallus
ENSBTAG00000004517	TARBP1	99	54.883	ENSGAFG00000007387	si:dkey-85a20.4	78	54.883	Gambusia_affinis
ENSBTAG00000004517	TARBP1	84	54.102	ENSGACG00000005865	si:dkey-85a20.4	91	54.102	Gasterosteus_aculeatus
ENSBTAG00000004517	TARBP1	99	77.603	ENSGAGG00000012102	TARBP1	93	77.603	Gopherus_agassizii
ENSBTAG00000004517	TARBP1	85	82.388	ENSGGOG00000022879	TARBP1	99	83.200	Gorilla_gorilla
ENSBTAG00000004517	TARBP1	92	55.969	ENSHBUG00000008877	si:dkey-85a20.4	78	55.969	Haplochromis_burtoni
ENSBTAG00000004517	TARBP1	99	76.918	ENSHGLG00000011592	TARBP1	99	76.733	Heterocephalus_glaber_female
ENSBTAG00000004517	TARBP1	95	76.934	ENSHGLG00100015169	TARBP1	99	78.412	Heterocephalus_glaber_male
ENSBTAG00000004517	TARBP1	99	50.289	ENSIPUG00000005249	si:dkey-85a20.4	81	50.289	Ictalurus_punctatus
ENSBTAG00000004517	TARBP1	89	75.666	ENSSTOG00000032291	TARBP1	99	79.070	Ictidomys_tridecemlineatus
ENSBTAG00000004517	TARBP1	94	70.733	ENSJJAG00000017840	Tarbp1	99	71.843	Jaculus_jaculus
ENSBTAG00000004517	TARBP1	99	38.778	ENSKMAG00000017546	si:dkey-85a20.4	85	41.791	Kryptolebias_marmoratus
ENSBTAG00000004517	TARBP1	73	49.933	ENSLBEG00000012132	si:dkey-85a20.4	78	50.067	Labrus_bergylta
ENSBTAG00000004517	TARBP1	99	62.062	ENSLACG00000004337	TARBP1	93	62.062	Latimeria_chalumnae
ENSBTAG00000004517	TARBP1	98	56.238	ENSLOCG00000016214	si:dkey-85a20.4	85	49.929	Lepisosteus_oculatus
ENSBTAG00000004517	TARBP1	95	84.387	ENSLAFG00000011394	TARBP1	99	82.911	Loxodonta_africana
ENSBTAG00000004517	TARBP1	99	83.333	ENSMFAG00000041068	TARBP1	99	81.717	Macaca_fascicularis
ENSBTAG00000004517	TARBP1	99	83.333	ENSMMUG00000021703	TARBP1	99	82.031	Macaca_mulatta
ENSBTAG00000004517	TARBP1	99	84.649	ENSMNEG00000045002	TARBP1	99	84.340	Macaca_nemestrina
ENSBTAG00000004517	TARBP1	83	86.064	ENSMLEG00000044182	TARBP1	99	86.064	Mandrillus_leucophaeus
ENSBTAG00000004517	TARBP1	94	54.651	ENSMAMG00000021760	si:dkey-85a20.4	83	54.651	Mastacembelus_armatus
ENSBTAG00000004517	TARBP1	92	55.773	ENSMZEG00005005751	si:dkey-85a20.4	78	55.773	Maylandia_zebra
ENSBTAG00000004517	TARBP1	99	77.930	ENSMAUG00000020968	Tarbp1	99	72.239	Mesocricetus_auratus
ENSBTAG00000004517	TARBP1	99	76.075	ENSMICG00000015280	TARBP1	99	75.750	Microcebus_murinus
ENSBTAG00000004517	TARBP1	99	77.344	ENSMOCG00000004128	Tarbp1	99	72.020	Microtus_ochrogaster
ENSBTAG00000004517	TARBP1	99	52.988	ENSMMOG00000007795	si:dkey-85a20.4	84	52.988	Mola_mola
ENSBTAG00000004517	TARBP1	99	78.782	ENSMODG00000008504	TARBP1	93	78.782	Monodelphis_domestica
ENSBTAG00000004517	TARBP1	84	55.138	ENSMALG00000002916	si:dkey-85a20.4	82	55.138	Monopterus_albus
ENSBTAG00000004517	TARBP1	99	76.562	MGP_CAROLIEiJ_G0031729	Tarbp1	99	71.605	Mus_caroli
ENSBTAG00000004517	TARBP1	99	76.367	ENSMUSG00000090290	Tarbp1	99	71.446	Mus_musculus
ENSBTAG00000004517	TARBP1	99	76.218	MGP_PahariEiJ_G0023326	Tarbp1	99	71.561	Mus_pahari
ENSBTAG00000004517	TARBP1	99	76.758	MGP_SPRETEiJ_G0032846	Tarbp1	99	71.508	Mus_spretus
ENSBTAG00000004517	TARBP1	77	83.766	ENSMPUG00000002802	TARBP1	99	84.435	Mustela_putorius_furo
ENSBTAG00000004517	TARBP1	84	75.948	ENSMLUG00000002414	TARBP1	99	76.260	Myotis_lucifugus
ENSBTAG00000004517	TARBP1	99	84.398	ENSNLEG00000002518	TARBP1	99	84.152	Nomascus_leucogenys
ENSBTAG00000004517	TARBP1	71	75.000	ENSMEUG00000011370	-	67	78.632	Notamacropus_eugenii
ENSBTAG00000004517	TARBP1	71	84.526	ENSOPRG00000013822	TARBP1	71	84.526	Ochotona_princeps
ENSBTAG00000004517	TARBP1	99	77.087	ENSODEG00000005238	TARBP1	99	72.772	Octodon_degus
ENSBTAG00000004517	TARBP1	84	55.969	ENSONIG00000009789	si:dkey-85a20.4	91	55.969	Oreochromis_niloticus
ENSBTAG00000004517	TARBP1	99	83.046	ENSOCUG00000017418	TARBP1	99	83.046	Oryctolagus_cuniculus
ENSBTAG00000004517	TARBP1	99	53.475	ENSORLG00000010529	si:dkey-85a20.4	82	53.475	Oryzias_latipes
ENSBTAG00000004517	TARBP1	99	53.475	ENSORLG00020019264	si:dkey-85a20.4	82	53.282	Oryzias_latipes_hni
ENSBTAG00000004517	TARBP1	99	53.282	ENSORLG00015003276	si:dkey-85a20.4	82	53.089	Oryzias_latipes_hsok
ENSBTAG00000004517	TARBP1	99	80.814	ENSOGAG00000002379	TARBP1	99	80.444	Otolemur_garnettii
ENSBTAG00000004517	TARBP1	96	95.582	ENSOARG00000003434	TARBP1	99	95.278	Ovis_aries
ENSBTAG00000004517	TARBP1	84	86.144	ENSPPAG00000028097	TARBP1	99	86.144	Pan_paniscus
ENSBTAG00000004517	TARBP1	95	87.425	ENSPPRG00000013561	TARBP1	92	85.490	Panthera_pardus
ENSBTAG00000004517	TARBP1	83	86.222	ENSPTIG00000009281	TARBP1	100	86.394	Panthera_tigris_altaica
ENSBTAG00000004517	TARBP1	99	84.663	ENSPTRG00000002124	TARBP1	99	84.294	Pan_troglodytes
ENSBTAG00000004517	TARBP1	99	84.772	ENSPANG00000021933	TARBP1	99	84.464	Papio_anubis
ENSBTAG00000004517	TARBP1	99	51.908	ENSPKIG00000016716	si:dkey-85a20.4	88	45.737	Paramormyrops_kingsleyae
ENSBTAG00000004517	TARBP1	77	76.078	ENSPSIG00000010699	TARBP1	99	69.953	Pelodiscus_sinensis
ENSBTAG00000004517	TARBP1	96	77.973	ENSPEMG00000006888	Tarbp1	99	74.393	Peromyscus_maniculatus_bairdii
ENSBTAG00000004517	TARBP1	92	86.634	ENSPCIG00000029710	TARBP1	99	86.634	Phascolarctos_cinereus
ENSBTAG00000004517	TARBP1	83	54.280	ENSPFOG00000013020	si:dkey-85a20.4	91	54.086	Poecilia_formosa
ENSBTAG00000004517	TARBP1	99	54.990	ENSPLAG00000006044	si:dkey-85a20.4	78	54.990	Poecilia_latipinna
ENSBTAG00000004517	TARBP1	99	54.795	ENSPMEG00000017857	si:dkey-85a20.4	80	54.795	Poecilia_mexicana
ENSBTAG00000004517	TARBP1	99	54.776	ENSPREG00000022753	si:dkey-85a20.4	78	54.776	Poecilia_reticulata
ENSBTAG00000004517	TARBP1	91	85.222	ENSPPYG00000000102	TARBP1	99	85.222	Pongo_abelii
ENSBTAG00000004517	TARBP1	90	90.667	ENSPCAG00000004808	TARBP1	85	90.667	Procavia_capensis
ENSBTAG00000004517	TARBP1	99	82.861	ENSPCOG00000005666	TARBP1	99	82.121	Propithecus_coquereli
ENSBTAG00000004517	TARBP1	99	69.051	ENSPVAG00000014798	TARBP1	99	68.619	Pteropus_vampyrus
ENSBTAG00000004517	TARBP1	92	55.577	ENSPNYG00000019135	si:dkey-85a20.4	78	55.577	Pundamilia_nyererei
ENSBTAG00000004517	TARBP1	99	74.606	ENSRNOG00000053574	Tarbp1	93	74.606	Rattus_norvegicus
ENSBTAG00000004517	TARBP1	95	83.529	ENSRBIG00000043362	TARBP1	99	90.625	Rhinopithecus_bieti
ENSBTAG00000004517	TARBP1	99	83.529	ENSRROG00000029527	TARBP1	99	80.713	Rhinopithecus_roxellana
ENSBTAG00000004517	TARBP1	89	85.377	ENSSBOG00000034503	TARBP1	99	88.372	Saimiri_boliviensis_boliviensis
ENSBTAG00000004517	TARBP1	81	79.804	ENSSHAG00000000013	TARBP1	99	75.536	Sarcophilus_harrisii
ENSBTAG00000004517	TARBP1	82	52.308	ENSSFOG00015002660	si:dkey-85a20.4	96	46.108	Scleropages_formosus
ENSBTAG00000004517	TARBP1	90	54.280	ENSSMAG00000007081	si:dkey-85a20.4	93	54.475	Scophthalmus_maximus
ENSBTAG00000004517	TARBP1	90	51.657	ENSSDUG00000023566	si:dkey-85a20.4	79	51.657	Seriola_dumerili
ENSBTAG00000004517	TARBP1	90	55.577	ENSSLDG00000020200	si:dkey-85a20.4	85	55.577	Seriola_lalandi_dorsalis
ENSBTAG00000004517	TARBP1	89	86.744	ENSSARG00000012207	TARBP1	89	86.744	Sorex_araneus
ENSBTAG00000004517	TARBP1	99	75.787	ENSSPUG00000015364	TARBP1	93	75.787	Sphenodon_punctatus
ENSBTAG00000004517	TARBP1	99	54.599	ENSSPAG00000007213	si:dkey-85a20.4	82	54.599	Stegastes_partitus
ENSBTAG00000004517	TARBP1	100	88.000	ENSSSCG00000010160	TARBP1	100	88.787	Sus_scrofa
ENSBTAG00000004517	TARBP1	78	73.767	ENSTGUG00000010214	TARBP1	100	67.073	Taeniopygia_guttata
ENSBTAG00000004517	TARBP1	93	50.916	ENSTNIG00000016586	si:dkey-85a20.4	91	54.297	Tetraodon_nigroviridis
ENSBTAG00000004517	TARBP1	91	90.805	ENSTTRG00000008707	TARBP1	96	86.982	Tursiops_truncatus
ENSBTAG00000004517	TARBP1	82	85.553	ENSUMAG00000006730	TARBP1	99	85.553	Ursus_maritimus
ENSBTAG00000004517	TARBP1	79	93.684	ENSVPAG00000007665	TARBP1	87	93.684	Vicugna_pacos
ENSBTAG00000004517	TARBP1	85	86.643	ENSVVUG00000007460	TARBP1	98	86.570	Vulpes_vulpes
ENSBTAG00000004517	TARBP1	82	59.412	ENSXETG00000016224	tarbp1	99	55.880	Xenopus_tropicalis
ENSBTAG00000004517	TARBP1	75	53.831	ENSXCOG00000011779	si:dkey-85a20.4	93	49.113	Xiphophorus_couchianus
ENSBTAG00000004517	TARBP1	62	62.264	ENSXMAG00000009600	si:dkey-85a20.4	92	62.264	Xiphophorus_maculatus