EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000004521 (Gene tree)
Gene ID: 509920
Gene Symbol: LSM7
Alias: -
Full Name: Bos taurus LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated (LSM7)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 4724 bases
Position: chr7:21239214-21243937
Accession: NM_001143862
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000005939	LSM	PF01423.22	4.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000005939	-	452	XM_005209043	ENSBTAP00000005939	103 (aa)	XP_005209100	F1N6T3

Gene Model

Click here to download ENSBTAG00000004521's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03018	RNA degradation	KEGG
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000004521's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000004521	LSM7	72	35.526	ENSBTAG00000012649	LSM8	73	35.526
ENSBTAG00000004521	LSM7	69	36.620	ENSBTAG00000034506	-	83	36.620
ENSBTAG00000004521	LSM7	58	41.667	ENSBTAG00000053210	SNRPG	68	41.667
ENSBTAG00000004521	LSM7	64	33.333	ENSBTAG00000050695	-	91	33.333
ENSBTAG00000004521	LSM7	69	36.620	ENSBTAG00000038368	-	83	36.620
ENSBTAG00000004521	LSM7	64	39.394	ENSBTAG00000014104	-	91	39.394
ENSBTAG00000004521	LSM7	68	37.143	ENSBTAG00000049132	-	84	37.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000004521	LSM7	100	100.000	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSBTAG00000004521	LSM7	91	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSBTAG00000004521	LSM7	100	97.087	ENSAMEG00000005484	LSM7	100	97.087	Ailuropoda_melanoleuca
ENSBTAG00000004521	LSM7	95	94.898	ENSACIG00000006498	lsm7	78	94.898	Amphilophus_citrinellus
ENSBTAG00000004521	LSM7	98	95.050	ENSAOCG00000001077	lsm7	92	95.050	Amphiprion_ocellaris
ENSBTAG00000004521	LSM7	100	95.146	ENSAPEG00000000694	lsm7	100	95.146	Amphiprion_percula
ENSBTAG00000004521	LSM7	100	93.204	ENSAPEG00000024447	lsm7	92	95.050	Amphiprion_percula
ENSBTAG00000004521	LSM7	100	95.146	ENSATEG00000008557	lsm7	100	95.146	Anabas_testudineus
ENSBTAG00000004521	LSM7	100	100.000	ENSANAG00000037196	-	100	100.000	Aotus_nancymaae
ENSBTAG00000004521	LSM7	100	91.262	ENSANAG00000022222	-	100	91.262	Aotus_nancymaae
ENSBTAG00000004521	LSM7	100	94.175	ENSACLG00000021021	lsm7	100	94.175	Astatotilapia_calliptera
ENSBTAG00000004521	LSM7	100	95.146	ENSAMXG00000037622	lsm7	100	95.146	Astyanax_mexicanus
ENSBTAG00000004521	LSM7	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSBTAG00000004521	LSM7	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSBTAG00000004521	LSM7	98	99.010	ENSCAFG00000019409	LSM7	98	99.010	Canis_familiaris
ENSBTAG00000004521	LSM7	98	99.010	ENSCAFG00020018168	LSM7	74	99.010	Canis_lupus_dingo
ENSBTAG00000004521	LSM7	100	98.058	ENSCHIG00000023663	LSM7	100	98.058	Capra_hircus
ENSBTAG00000004521	LSM7	69	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSBTAG00000004521	LSM7	100	100.000	ENSCPOG00000014025	LSM7	100	100.000	Cavia_porcellus
ENSBTAG00000004521	LSM7	98	100.000	ENSCCAG00000035456	LSM7	99	100.000	Cebus_capucinus
ENSBTAG00000004521	LSM7	100	100.000	ENSCATG00000023543	LSM7	100	100.000	Cercocebus_atys
ENSBTAG00000004521	LSM7	100	100.000	ENSCLAG00000011635	LSM7	100	100.000	Chinchilla_lanigera
ENSBTAG00000004521	LSM7	100	100.000	ENSCSAG00000011599	LSM7	100	100.000	Chlorocebus_sabaeus
ENSBTAG00000004521	LSM7	70	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSBTAG00000004521	LSM7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSBTAG00000004521	LSM7	100	100.000	ENSCANG00000035525	LSM7	100	100.000	Colobus_angolensis_palliatus
ENSBTAG00000004521	LSM7	87	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSBTAG00000004521	LSM7	100	99.029	ENSCGRG00001000807	-	100	99.029	Cricetulus_griseus_chok1gshd
ENSBTAG00000004521	LSM7	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSBTAG00000004521	LSM7	98	99.010	ENSCGRG00000014355	-	97	99.010	Cricetulus_griseus_crigri
ENSBTAG00000004521	LSM7	98	95.050	ENSCSEG00000014900	lsm7	86	95.050	Cynoglossus_semilaevis
ENSBTAG00000004521	LSM7	98	96.040	ENSCVAG00000021091	lsm7	94	96.040	Cyprinodon_variegatus
ENSBTAG00000004521	LSM7	100	95.146	ENSDARG00000058328	lsm7	100	95.146	Danio_rerio
ENSBTAG00000004521	LSM7	99	98.039	ENSDORG00000024460	Lsm7	100	98.039	Dipodomys_ordii
ENSBTAG00000004521	LSM7	94	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSBTAG00000004521	LSM7	98	97.030	ENSETEG00000012788	LSM7	99	97.030	Echinops_telfairi
ENSBTAG00000004521	LSM7	100	84.466	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSBTAG00000004521	LSM7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSBTAG00000004521	LSM7	100	96.117	ENSECAG00000001440	LSM7	66	96.117	Equus_caballus
ENSBTAG00000004521	LSM7	100	99.029	ENSFCAG00000003445	LSM7	100	99.029	Felis_catus
ENSBTAG00000004521	LSM7	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSBTAG00000004521	LSM7	93	100.000	ENSFDAG00000007661	LSM7	100	100.000	Fukomys_damarensis
ENSBTAG00000004521	LSM7	98	96.040	ENSFHEG00000006349	lsm7	90	96.040	Fundulus_heteroclitus
ENSBTAG00000004521	LSM7	100	91.262	ENSGMOG00000013320	lsm7	100	91.262	Gadus_morhua
ENSBTAG00000004521	LSM7	100	96.117	ENSGAFG00000013902	lsm7	100	96.117	Gambusia_affinis
ENSBTAG00000004521	LSM7	100	92.233	ENSGACG00000010390	lsm7	100	92.233	Gasterosteus_aculeatus
ENSBTAG00000004521	LSM7	100	100.000	ENSGGOG00000010172	LSM7	100	100.000	Gorilla_gorilla
ENSBTAG00000004521	LSM7	100	94.175	ENSHBUG00000004616	lsm7	100	94.175	Haplochromis_burtoni
ENSBTAG00000004521	LSM7	100	100.000	ENSHGLG00000010587	LSM7	100	100.000	Heterocephalus_glaber_female
ENSBTAG00000004521	LSM7	100	100.000	ENSHGLG00100000852	LSM7	100	100.000	Heterocephalus_glaber_male
ENSBTAG00000004521	LSM7	98	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSBTAG00000004521	LSM7	100	95.146	ENSIPUG00000024724	lsm7	100	95.146	Ictalurus_punctatus
ENSBTAG00000004521	LSM7	98	100.000	ENSSTOG00000028372	LSM7	99	100.000	Ictidomys_tridecemlineatus
ENSBTAG00000004521	LSM7	98	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSBTAG00000004521	LSM7	100	96.117	ENSKMAG00000022151	lsm7	100	96.117	Kryptolebias_marmoratus
ENSBTAG00000004521	LSM7	100	94.175	ENSLBEG00000005203	lsm7	100	94.175	Labrus_bergylta
ENSBTAG00000004521	LSM7	100	97.087	ENSLACG00000015700	LSM7	100	97.087	Latimeria_chalumnae
ENSBTAG00000004521	LSM7	100	96.117	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSBTAG00000004521	LSM7	98	100.000	ENSLAFG00000029302	LSM7	98	100.000	Loxodonta_africana
ENSBTAG00000004521	LSM7	100	100.000	ENSMFAG00000044572	LSM7	100	100.000	Macaca_fascicularis
ENSBTAG00000004521	LSM7	100	100.000	ENSMMUG00000000452	LSM7	100	100.000	Macaca_mulatta
ENSBTAG00000004521	LSM7	100	100.000	ENSMNEG00000004393	LSM7	100	100.000	Macaca_nemestrina
ENSBTAG00000004521	LSM7	100	100.000	ENSMLEG00000030852	LSM7	100	100.000	Mandrillus_leucophaeus
ENSBTAG00000004521	LSM7	100	94.175	ENSMAMG00000005410	lsm7	100	94.175	Mastacembelus_armatus
ENSBTAG00000004521	LSM7	100	94.175	ENSMZEG00005028055	lsm7	100	94.175	Maylandia_zebra
ENSBTAG00000004521	LSM7	100	98.058	ENSMGAG00000000750	LSM7	89	98.058	Meleagris_gallopavo
ENSBTAG00000004521	LSM7	100	99.029	ENSMAUG00000009276	Lsm7	100	99.029	Mesocricetus_auratus
ENSBTAG00000004521	LSM7	100	99.029	ENSMICG00000009988	-	100	99.029	Microcebus_murinus
ENSBTAG00000004521	LSM7	100	100.000	ENSMICG00000028619	-	100	100.000	Microcebus_murinus
ENSBTAG00000004521	LSM7	100	99.029	ENSMOCG00000016925	Lsm7	100	99.029	Microtus_ochrogaster
ENSBTAG00000004521	LSM7	100	95.146	ENSMMOG00000019645	lsm7	98	95.146	Mola_mola
ENSBTAG00000004521	LSM7	100	99.029	ENSMODG00000004722	LSM7	100	99.029	Monodelphis_domestica
ENSBTAG00000004521	LSM7	100	94.175	ENSMALG00000014511	lsm7	79	94.175	Monopterus_albus
ENSBTAG00000004521	LSM7	100	97.087	MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	Mus_caroli
ENSBTAG00000004521	LSM7	100	97.087	ENSMUSG00000035215	Lsm7	100	97.087	Mus_musculus
ENSBTAG00000004521	LSM7	100	97.087	MGP_PahariEiJ_G0031020	Lsm7	100	97.087	Mus_pahari
ENSBTAG00000004521	LSM7	100	97.087	MGP_SPRETEiJ_G0016425	Lsm7	100	97.087	Mus_spretus
ENSBTAG00000004521	LSM7	100	97.087	ENSMLUG00000013097	-	100	97.087	Myotis_lucifugus
ENSBTAG00000004521	LSM7	100	92.233	ENSMLUG00000024002	-	94	92.233	Myotis_lucifugus
ENSBTAG00000004521	LSM7	100	98.058	ENSNGAG00000021637	Lsm7	100	98.058	Nannospalax_galili
ENSBTAG00000004521	LSM7	91	94.681	ENSNBRG00000001237	-	82	92.233	Neolamprologus_brichardi
ENSBTAG00000004521	LSM7	98	94.059	ENSNBRG00000015770	lsm7	87	94.059	Neolamprologus_brichardi
ENSBTAG00000004521	LSM7	100	100.000	ENSNLEG00000002265	LSM7	100	100.000	Nomascus_leucogenys
ENSBTAG00000004521	LSM7	100	79.612	ENSODEG00000008190	-	100	79.612	Octodon_degus
ENSBTAG00000004521	LSM7	100	100.000	ENSODEG00000013590	-	100	100.000	Octodon_degus
ENSBTAG00000004521	LSM7	100	93.204	ENSODEG00000018769	-	100	93.204	Octodon_degus
ENSBTAG00000004521	LSM7	100	94.175	ENSONIG00000001801	lsm7	89	94.175	Oreochromis_niloticus
ENSBTAG00000004521	LSM7	100	95.146	ENSORLG00000023951	lsm7	100	95.146	Oryzias_latipes
ENSBTAG00000004521	LSM7	100	95.146	ENSORLG00020022226	lsm7	100	95.146	Oryzias_latipes_hni
ENSBTAG00000004521	LSM7	100	93.204	ENSORLG00015020044	lsm7	94	95.050	Oryzias_latipes_hsok
ENSBTAG00000004521	LSM7	100	95.146	ENSOMEG00000012806	lsm7	100	95.146	Oryzias_melastigma
ENSBTAG00000004521	LSM7	98	98.020	ENSOGAG00000000144	-	99	98.020	Otolemur_garnettii
ENSBTAG00000004521	LSM7	100	88.350	ENSOGAG00000024373	-	100	88.350	Otolemur_garnettii
ENSBTAG00000004521	LSM7	100	98.058	ENSOARG00000014013	LSM7	100	98.058	Ovis_aries
ENSBTAG00000004521	LSM7	100	100.000	ENSPPAG00000026500	LSM7	100	100.000	Pan_paniscus
ENSBTAG00000004521	LSM7	100	99.029	ENSPPRG00000008624	LSM7	100	99.029	Panthera_pardus
ENSBTAG00000004521	LSM7	98	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSBTAG00000004521	LSM7	100	100.000	ENSPTRG00000010233	LSM7	100	100.000	Pan_troglodytes
ENSBTAG00000004521	LSM7	100	100.000	ENSPANG00000020668	LSM7	100	100.000	Papio_anubis
ENSBTAG00000004521	LSM7	100	97.087	ENSPKIG00000011325	lsm7	100	97.087	Paramormyrops_kingsleyae
ENSBTAG00000004521	LSM7	98	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSBTAG00000004521	LSM7	100	95.146	ENSPMGG00000006498	lsm7	100	95.146	Periophthalmus_magnuspinnatus
ENSBTAG00000004521	LSM7	100	99.029	ENSPCIG00000030454	LSM7	100	99.029	Phascolarctos_cinereus
ENSBTAG00000004521	LSM7	100	93.204	ENSPFOG00000012467	lsm7	91	93.204	Poecilia_formosa
ENSBTAG00000004521	LSM7	100	93.204	ENSPLAG00000000252	lsm7	94	94.118	Poecilia_latipinna
ENSBTAG00000004521	LSM7	100	93.204	ENSPMEG00000000587	lsm7	94	94.118	Poecilia_mexicana
ENSBTAG00000004521	LSM7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSBTAG00000004521	LSM7	71	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSBTAG00000004521	LSM7	100	100.000	ENSPCOG00000017177	LSM7	100	100.000	Propithecus_coquereli
ENSBTAG00000004521	LSM7	100	94.175	ENSPNYG00000006938	lsm7	100	94.175	Pundamilia_nyererei
ENSBTAG00000004521	LSM7	100	95.146	ENSPNAG00000010141	lsm7	100	95.146	Pygocentrus_nattereri
ENSBTAG00000004521	LSM7	100	98.058	ENSRNOG00000019552	Lsm7	100	98.058	Rattus_norvegicus
ENSBTAG00000004521	LSM7	100	100.000	ENSRBIG00000035978	LSM7	100	100.000	Rhinopithecus_bieti
ENSBTAG00000004521	LSM7	100	100.000	ENSRROG00000034044	LSM7	100	100.000	Rhinopithecus_roxellana
ENSBTAG00000004521	LSM7	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSBTAG00000004521	LSM7	100	100.000	ENSSBOG00000034899	LSM7	100	100.000	Saimiri_boliviensis_boliviensis
ENSBTAG00000004521	LSM7	100	95.146	ENSSFOG00015006728	lsm7	100	95.146	Scleropages_formosus
ENSBTAG00000004521	LSM7	100	93.204	ENSSMAG00000004195	lsm7	93	95.050	Scophthalmus_maximus
ENSBTAG00000004521	LSM7	100	95.146	ENSSDUG00000001863	lsm7	100	95.146	Seriola_dumerili
ENSBTAG00000004521	LSM7	100	95.146	ENSSLDG00000016339	lsm7	100	95.146	Seriola_lalandi_dorsalis
ENSBTAG00000004521	LSM7	100	95.146	ENSSPAG00000015221	lsm7	100	95.146	Stegastes_partitus
ENSBTAG00000004521	LSM7	98	100.000	ENSSSCG00000013463	LSM7	99	100.000	Sus_scrofa
ENSBTAG00000004521	LSM7	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSBTAG00000004521	LSM7	100	95.146	ENSTRUG00000022913	lsm7	100	95.146	Takifugu_rubripes
ENSBTAG00000004521	LSM7	100	95.146	ENSTNIG00000015525	lsm7	100	95.146	Tetraodon_nigroviridis
ENSBTAG00000004521	LSM7	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSBTAG00000004521	LSM7	100	97.087	ENSUAMG00000000912	LSM7	86	97.087	Ursus_americanus
ENSBTAG00000004521	LSM7	98	99.010	ENSUMAG00000006556	LSM7	79	99.010	Ursus_maritimus
ENSBTAG00000004521	LSM7	69	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSBTAG00000004521	LSM7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSBTAG00000004521	LSM7	99	95.098	ENSXCOG00000002572	lsm7	100	95.098	Xiphophorus_couchianus
ENSBTAG00000004521	LSM7	100	96.117	ENSXMAG00000018630	lsm7	100	96.117	Xiphophorus_maculatus