EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000004571 (Gene tree)
Gene ID: 508735
Gene Symbol: PRPF4
Alias: -
Full Name: Bos taurus pre-mRNA processing factor 4 (PRPF4)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 20722 bases
Position: chr8:102517331-102538052
Accession: NM_001034330
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000006004	PRP4	PF08799.11	6.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000006004	-	2294	XM_005210520	ENSBTAP00000006004	521 (aa)	XP_005210577	Q3MHE2

Gene Model

Click here to download ENSBTAG00000004571's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000004571's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000004571	PRPF4	56	31.111	ENSBTAG00000001471	POC1A	78	30.000
ENSBTAG00000004571	PRPF4	56	30.625	ENSBTAG00000054326	WDR5B	76	30.625
ENSBTAG00000004571	PRPF4	56	33.051	ENSBTAG00000000687	POC1B	63	33.051
ENSBTAG00000004571	PRPF4	56	32.653	ENSBTAG00000020366	TBL3	65	32.653

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000004571	PRPF4	100	98.656	ENSG00000136875	PRPF4	100	98.656	Homo_sapiens
ENSBTAG00000004571	PRPF4	96	77.406	ENSAPOG00000014132	prpf4	98	77.406	Acanthochromis_polyacanthus
ENSBTAG00000004571	PRPF4	100	98.848	ENSAMEG00000013048	PRPF4	98	98.848	Ailuropoda_melanoleuca
ENSBTAG00000004571	PRPF4	96	77.183	ENSACIG00000005579	prpf4	99	77.183	Amphilophus_citrinellus
ENSBTAG00000004571	PRPF4	96	76.832	ENSAOCG00000005457	prpf4	99	76.832	Amphiprion_ocellaris
ENSBTAG00000004571	PRPF4	96	76.634	ENSAPEG00000000776	prpf4	99	76.634	Amphiprion_percula
ENSBTAG00000004571	PRPF4	96	76.587	ENSATEG00000023013	prpf4	99	76.587	Anabas_testudineus
ENSBTAG00000004571	PRPF4	100	89.443	ENSAPLG00000006534	PRPF4	97	89.443	Anas_platyrhynchos
ENSBTAG00000004571	PRPF4	100	89.675	ENSACAG00000015110	PRPF4	100	89.675	Anolis_carolinensis
ENSBTAG00000004571	PRPF4	100	99.040	ENSANAG00000022464	PRPF4	96	99.040	Aotus_nancymaae
ENSBTAG00000004571	PRPF4	96	76.984	ENSACLG00000019031	prpf4	99	76.984	Astatotilapia_calliptera
ENSBTAG00000004571	PRPF4	97	62.380	ENSAMXG00000006756	prpf4	99	73.465	Astyanax_mexicanus
ENSBTAG00000004571	PRPF4	90	44.211	WBGene00007972	prp-4	96	44.211	Caenorhabditis_elegans
ENSBTAG00000004571	PRPF4	100	98.851	ENSCJAG00000017856	PRPF4	100	98.851	Callithrix_jacchus
ENSBTAG00000004571	PRPF4	100	98.848	ENSCAFG00000003224	PRPF4	97	98.848	Canis_familiaris
ENSBTAG00000004571	PRPF4	100	98.848	ENSCAFG00020022637	PRPF4	100	98.848	Canis_lupus_dingo
ENSBTAG00000004571	PRPF4	100	99.042	ENSCHIG00000024648	-	100	99.042	Capra_hircus
ENSBTAG00000004571	PRPF4	100	98.848	ENSTSYG00000010366	PRPF4	100	98.848	Carlito_syrichta
ENSBTAG00000004571	PRPF4	88	88.067	ENSCAPG00000008935	PRPF4	97	88.067	Cavia_aperea
ENSBTAG00000004571	PRPF4	100	98.273	ENSCPOG00000010747	-	100	98.273	Cavia_porcellus
ENSBTAG00000004571	PRPF4	100	91.939	ENSCPOG00000014729	-	100	91.939	Cavia_porcellus
ENSBTAG00000004571	PRPF4	100	98.848	ENSCCAG00000028990	PRPF4	100	98.848	Cebus_capucinus
ENSBTAG00000004571	PRPF4	100	98.848	ENSCATG00000021552	PRPF4	100	98.848	Cercocebus_atys
ENSBTAG00000004571	PRPF4	100	98.464	ENSCLAG00000013448	PRPF4	100	98.464	Chinchilla_lanigera
ENSBTAG00000004571	PRPF4	87	95.354	ENSCHOG00000007233	PRPF4	100	95.354	Choloepus_hoffmanni
ENSBTAG00000004571	PRPF4	99	91.279	ENSCPBG00000019136	PRPF4	74	91.279	Chrysemys_picta_bellii
ENSBTAG00000004571	PRPF4	96	59.252	ENSCING00000001299	-	97	58.614	Ciona_intestinalis
ENSBTAG00000004571	PRPF4	96	57.540	ENSCSAVG00000009178	-	99	58.874	Ciona_savignyi
ENSBTAG00000004571	PRPF4	100	99.040	ENSCANG00000003246	PRPF4	100	99.040	Colobus_angolensis_palliatus
ENSBTAG00000004571	PRPF4	100	98.656	ENSCGRG00001016992	Prpf4	100	98.656	Cricetulus_griseus_chok1gshd
ENSBTAG00000004571	PRPF4	100	98.656	ENSCGRG00000017560	Prpf4	100	98.656	Cricetulus_griseus_crigri
ENSBTAG00000004571	PRPF4	97	75.644	ENSCSEG00000020451	prpf4	99	75.644	Cynoglossus_semilaevis
ENSBTAG00000004571	PRPF4	97	80.000	ENSDARG00000067639	prpf4	99	80.000	Danio_rerio
ENSBTAG00000004571	PRPF4	100	98.276	ENSDNOG00000013203	PRPF4	100	98.276	Dasypus_novemcinctus
ENSBTAG00000004571	PRPF4	100	98.656	ENSDORG00000026275	Prpf4	100	98.656	Dipodomys_ordii
ENSBTAG00000004571	PRPF4	87	56.674	FBgn0036733	U4-U6-60K	99	50.547	Drosophila_melanogaster
ENSBTAG00000004571	PRPF4	100	97.323	ENSETEG00000020389	PRPF4	100	97.323	Echinops_telfairi
ENSBTAG00000004571	PRPF4	95	73.041	ENSEBUG00000015229	prpf4	86	73.502	Eptatretus_burgeri
ENSBTAG00000004571	PRPF4	100	99.040	ENSEASG00005022678	PRPF4	100	99.040	Equus_asinus_asinus
ENSBTAG00000004571	PRPF4	100	99.040	ENSECAG00000007072	PRPF4	100	99.040	Equus_caballus
ENSBTAG00000004571	PRPF4	100	77.729	ENSEEUG00000007480	PRPF4	100	77.729	Erinaceus_europaeus
ENSBTAG00000004571	PRPF4	97	80.792	ENSELUG00000007510	prpf4	99	80.792	Esox_lucius
ENSBTAG00000004571	PRPF4	100	98.851	ENSFCAG00000005514	PRPF4	100	98.851	Felis_catus
ENSBTAG00000004571	PRPF4	98	88.341	ENSFALG00000005423	PRPF4	86	88.341	Ficedula_albicollis
ENSBTAG00000004571	PRPF4	100	98.273	ENSFDAG00000005839	PRPF4	100	98.273	Fukomys_damarensis
ENSBTAG00000004571	PRPF4	96	76.190	ENSFHEG00000001300	prpf4	99	76.190	Fundulus_heteroclitus
ENSBTAG00000004571	PRPF4	98	90.215	ENSGALG00000008857	PRPF4	95	90.215	Gallus_gallus
ENSBTAG00000004571	PRPF4	65	70.882	ENSGAFG00000012164	prpf4	70	70.882	Gambusia_affinis
ENSBTAG00000004571	PRPF4	96	69.643	ENSGACG00000015476	prpf4	99	68.849	Gasterosteus_aculeatus
ENSBTAG00000004571	PRPF4	99	91.085	ENSGAGG00000025029	PRPF4	96	91.085	Gopherus_agassizii
ENSBTAG00000004571	PRPF4	100	98.656	ENSGGOG00000006943	PRPF4	100	98.656	Gorilla_gorilla
ENSBTAG00000004571	PRPF4	96	76.786	ENSHBUG00000000562	prpf4	99	76.786	Haplochromis_burtoni
ENSBTAG00000004571	PRPF4	100	98.273	ENSHGLG00000015191	PRPF4	100	98.273	Heterocephalus_glaber_female
ENSBTAG00000004571	PRPF4	100	79.655	ENSHGLG00000003838	-	100	79.655	Heterocephalus_glaber_female
ENSBTAG00000004571	PRPF4	100	81.262	ENSHGLG00000016628	-	100	82.027	Heterocephalus_glaber_female
ENSBTAG00000004571	PRPF4	100	79.655	ENSHGLG00100005571	-	100	79.655	Heterocephalus_glaber_male
ENSBTAG00000004571	PRPF4	97	78.812	ENSIPUG00000017956	PRPF4	99	78.812	Ictalurus_punctatus
ENSBTAG00000004571	PRPF4	100	98.464	ENSSTOG00000027833	PRPF4	100	98.464	Ictidomys_tridecemlineatus
ENSBTAG00000004571	PRPF4	100	98.656	ENSJJAG00000008838	Prpf4	100	98.656	Jaculus_jaculus
ENSBTAG00000004571	PRPF4	96	76.190	ENSKMAG00000013236	prpf4	99	76.190	Kryptolebias_marmoratus
ENSBTAG00000004571	PRPF4	96	75.896	ENSLBEG00000020611	prpf4	99	75.896	Labrus_bergylta
ENSBTAG00000004571	PRPF4	99	80.539	ENSLACG00000016317	PRPF4	98	80.971	Latimeria_chalumnae
ENSBTAG00000004571	PRPF4	97	81.782	ENSLOCG00000000581	prpf4	99	81.782	Lepisosteus_oculatus
ENSBTAG00000004571	PRPF4	100	98.467	ENSLAFG00000018225	PRPF4	100	98.467	Loxodonta_africana
ENSBTAG00000004571	PRPF4	100	98.656	ENSMFAG00000039397	PRPF4	100	98.656	Macaca_fascicularis
ENSBTAG00000004571	PRPF4	100	98.848	ENSMMUG00000005844	PRPF4	100	98.848	Macaca_mulatta
ENSBTAG00000004571	PRPF4	100	88.484	ENSMNEG00000033737	PRPF4	100	88.484	Macaca_nemestrina
ENSBTAG00000004571	PRPF4	100	98.848	ENSMLEG00000040284	PRPF4	100	98.848	Mandrillus_leucophaeus
ENSBTAG00000004571	PRPF4	97	76.134	ENSMAMG00000020141	prpf4	99	76.134	Mastacembelus_armatus
ENSBTAG00000004571	PRPF4	96	76.984	ENSMZEG00005023205	prpf4	99	76.984	Maylandia_zebra
ENSBTAG00000004571	PRPF4	99	88.269	ENSMGAG00000001796	PRPF4	97	88.269	Meleagris_gallopavo
ENSBTAG00000004571	PRPF4	100	98.081	ENSMAUG00000018022	Prpf4	100	98.081	Mesocricetus_auratus
ENSBTAG00000004571	PRPF4	100	97.889	ENSMICG00000015022	PRPF4	100	97.701	Microcebus_murinus
ENSBTAG00000004571	PRPF4	100	98.081	ENSMOCG00000018273	Prpf4	100	98.081	Microtus_ochrogaster
ENSBTAG00000004571	PRPF4	97	74.851	ENSMMOG00000021177	prpf4	99	74.851	Mola_mola
ENSBTAG00000004571	PRPF4	100	94.455	ENSMODG00000004444	-	100	94.455	Monodelphis_domestica
ENSBTAG00000004571	PRPF4	100	94.646	ENSMODG00000025096	-	97	94.646	Monodelphis_domestica
ENSBTAG00000004571	PRPF4	96	76.587	ENSMALG00000013624	prpf4	99	76.587	Monopterus_albus
ENSBTAG00000004571	PRPF4	100	98.464	MGP_CAROLIEiJ_G0026078	Prpf4	100	98.464	Mus_caroli
ENSBTAG00000004571	PRPF4	100	98.464	ENSMUSG00000066148	Prpf4	100	98.464	Mus_musculus
ENSBTAG00000004571	PRPF4	100	98.273	MGP_PahariEiJ_G0028413	Prpf4	100	98.273	Mus_pahari
ENSBTAG00000004571	PRPF4	100	98.464	MGP_SPRETEiJ_G0027042	Prpf4	100	98.464	Mus_spretus
ENSBTAG00000004571	PRPF4	100	98.848	ENSMPUG00000007883	PRPF4	100	98.848	Mustela_putorius_furo
ENSBTAG00000004571	PRPF4	100	98.848	ENSMLUG00000015309	-	97	98.848	Myotis_lucifugus
ENSBTAG00000004571	PRPF4	100	96.929	ENSMLUG00000008626	-	97	96.929	Myotis_lucifugus
ENSBTAG00000004571	PRPF4	100	93.474	ENSNGAG00000000468	Prpf4	100	93.474	Nannospalax_galili
ENSBTAG00000004571	PRPF4	96	77.183	ENSNBRG00000007972	prpf4	99	77.183	Neolamprologus_brichardi
ENSBTAG00000004571	PRPF4	100	99.040	ENSNLEG00000016647	PRPF4	100	99.040	Nomascus_leucogenys
ENSBTAG00000004571	PRPF4	99	94.747	ENSMEUG00000013256	PRPF4	100	94.747	Notamacropus_eugenii
ENSBTAG00000004571	PRPF4	100	98.084	ENSOPRG00000005302	PRPF4	100	98.084	Ochotona_princeps
ENSBTAG00000004571	PRPF4	100	98.656	ENSODEG00000018147	PRPF4	100	98.656	Octodon_degus
ENSBTAG00000004571	PRPF4	96	76.984	ENSONIG00000012671	prpf4	99	76.984	Oreochromis_niloticus
ENSBTAG00000004571	PRPF4	100	98.848	ENSOCUG00000005046	PRPF4	100	98.848	Oryctolagus_cuniculus
ENSBTAG00000004571	PRPF4	96	74.900	ENSORLG00000019641	prpf4	99	74.900	Oryzias_latipes
ENSBTAG00000004571	PRPF4	96	74.900	ENSORLG00020019438	prpf4	99	74.900	Oryzias_latipes_hni
ENSBTAG00000004571	PRPF4	96	74.737	ENSOMEG00000020941	prpf4	99	74.737	Oryzias_melastigma
ENSBTAG00000004571	PRPF4	100	93.858	ENSOGAG00000007802	PRPF4	98	93.858	Otolemur_garnettii
ENSBTAG00000004571	PRPF4	100	99.232	ENSOARG00000006319	PRPF4	97	99.232	Ovis_aries
ENSBTAG00000004571	PRPF4	100	98.656	ENSPPAG00000041797	PRPF4	100	98.656	Pan_paniscus
ENSBTAG00000004571	PRPF4	100	99.040	ENSPPRG00000014360	PRPF4	100	99.040	Panthera_pardus
ENSBTAG00000004571	PRPF4	100	99.040	ENSPTIG00000009574	PRPF4	100	99.040	Panthera_tigris_altaica
ENSBTAG00000004571	PRPF4	100	98.656	ENSPTRG00000021274	PRPF4	100	98.467	Pan_troglodytes
ENSBTAG00000004571	PRPF4	100	98.656	ENSPANG00000025776	PRPF4	96	98.656	Papio_anubis
ENSBTAG00000004571	PRPF4	97	81.188	ENSPKIG00000017259	prpf4	99	81.188	Paramormyrops_kingsleyae
ENSBTAG00000004571	PRPF4	98	91.016	ENSPSIG00000010713	PRPF4	90	91.016	Pelodiscus_sinensis
ENSBTAG00000004571	PRPF4	99	58.532	ENSPMGG00000000997	prpf4	99	58.532	Periophthalmus_magnuspinnatus
ENSBTAG00000004571	PRPF4	100	98.656	ENSPEMG00000024115	Prpf4	100	98.656	Peromyscus_maniculatus_bairdii
ENSBTAG00000004571	PRPF4	99	94.747	ENSPCIG00000003821	PRPF4	99	94.747	Phascolarctos_cinereus
ENSBTAG00000004571	PRPF4	96	70.020	ENSPFOG00000013524	prpf4	98	72.981	Poecilia_formosa
ENSBTAG00000004571	PRPF4	83	71.560	ENSPLAG00000011620	prpf4	96	72.050	Poecilia_latipinna
ENSBTAG00000004571	PRPF4	92	74.096	ENSPMEG00000006813	prpf4	98	74.096	Poecilia_mexicana
ENSBTAG00000004571	PRPF4	98	98.830	ENSPCAG00000002561	PRPF4	99	98.830	Procavia_capensis
ENSBTAG00000004571	PRPF4	100	98.464	ENSPCOG00000011975	PRPF4	100	98.464	Propithecus_coquereli
ENSBTAG00000004571	PRPF4	100	94.828	ENSPVAG00000004708	PRPF4	100	94.828	Pteropus_vampyrus
ENSBTAG00000004571	PRPF4	96	76.984	ENSPNYG00000008013	prpf4	99	76.984	Pundamilia_nyererei
ENSBTAG00000004571	PRPF4	97	80.396	ENSPNAG00000000697	prpf4	99	80.396	Pygocentrus_nattereri
ENSBTAG00000004571	PRPF4	100	98.273	ENSRNOG00000014777	Prpf4	100	98.273	Rattus_norvegicus
ENSBTAG00000004571	PRPF4	100	99.040	ENSRBIG00000040221	PRPF4	100	99.040	Rhinopithecus_bieti
ENSBTAG00000004571	PRPF4	100	99.040	ENSRROG00000040240	PRPF4	100	99.040	Rhinopithecus_roxellana
ENSBTAG00000004571	PRPF4	100	94.837	ENSSHAG00000017658	PRPF4	100	94.837	Sarcophilus_harrisii
ENSBTAG00000004571	PRPF4	97	81.980	ENSSFOG00015008963	prpf4	99	81.980	Scleropages_formosus
ENSBTAG00000004571	PRPF4	96	75.595	ENSSMAG00000008889	prpf4	99	75.595	Scophthalmus_maximus
ENSBTAG00000004571	PRPF4	96	73.506	ENSSDUG00000022083	prpf4	98	73.705	Seriola_dumerili
ENSBTAG00000004571	PRPF4	96	73.705	ENSSLDG00000008115	prpf4	98	73.904	Seriola_lalandi_dorsalis
ENSBTAG00000004571	PRPF4	100	90.403	ENSSPUG00000015582	PRPF4	100	90.403	Sphenodon_punctatus
ENSBTAG00000004571	PRPF4	96	71.203	ENSSPAG00000011286	prpf4	99	71.203	Stegastes_partitus
ENSBTAG00000004571	PRPF4	100	99.040	ENSSSCG00000024648	PRPF4	100	99.040	Sus_scrofa
ENSBTAG00000004571	PRPF4	95	90.467	ENSTGUG00000002623	PRPF4	100	90.798	Taeniopygia_guttata
ENSBTAG00000004571	PRPF4	97	75.692	ENSTRUG00000008853	prpf4	99	75.692	Takifugu_rubripes
ENSBTAG00000004571	PRPF4	97	75.050	ENSTNIG00000013250	prpf4	99	75.050	Tetraodon_nigroviridis
ENSBTAG00000004571	PRPF4	100	89.847	ENSTBEG00000000821	PRPF4	100	89.847	Tupaia_belangeri
ENSBTAG00000004571	PRPF4	82	98.837	ENSTTRG00000003246	PRPF4	85	98.837	Tursiops_truncatus
ENSBTAG00000004571	PRPF4	64	95.210	ENSUAMG00000018288	PRPF4	90	95.210	Ursus_americanus
ENSBTAG00000004571	PRPF4	100	98.273	ENSUMAG00000019375	PRPF4	100	98.273	Ursus_maritimus
ENSBTAG00000004571	PRPF4	100	98.276	ENSVPAG00000005281	PRPF4	100	98.276	Vicugna_pacos
ENSBTAG00000004571	PRPF4	100	97.714	ENSVVUG00000002476	PRPF4	100	97.830	Vulpes_vulpes
ENSBTAG00000004571	PRPF4	69	58.056	ENSXCOG00000006101	prpf4	93	59.360	Xiphophorus_couchianus
ENSBTAG00000004571	PRPF4	88	64.410	ENSXMAG00000002750	prpf4	98	65.408	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0015030	Cajal body	-	IEA	Component
GO:0016607	nuclear speck	-	ISS	Component
GO:0071001	U4/U6 snRNP	-	ISS	Component
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0097525	spliceosomal snRNP complex	-	ISS	Component