EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000005446 (Gene tree)
Gene ID: 540428
Gene Symbol: POLR2J
Alias: POLR2J2
Full Name: Bos taurus RNA polymerase II subunit J (POLR2J)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 4385 bases
Position: chr25:34576779-34581163
Accession: NM_001037483
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000007165	RNA_pol_L_2	PF13656.6	3.9e-29	1	1
ENSBTAP00000060312	RNA_pol_L_2	PF13656.6	2.3e-28	1	1
ENSBTAP00000007165	RNA_pol_L	PF01193.24	4.3e-10	1	1
ENSBTAP00000060312	RNA_pol_L	PF01193.24	2.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000007165	-	577	-	ENSBTAP00000007165	117 (aa)	-	Q32P79
ENSBTAT00000086602	-	1236	-	ENSBTAP00000060312	248 (aa)	-	UPI00005C0095

Gene Model

Click here to download ENSBTAG00000005446's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03020	RNA polymerase	KEGG
bta05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000005446's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000005446	POLR2J	62	68.493	ENSBTAG00000048046	-	61	68.493
ENSBTAG00000005446	POLR2J	85	33.981	ENSBTAG00000033252	-	77	33.981
ENSBTAG00000005446	POLR2J	85	33.981	ENSBTAG00000008642	POLR1D	77	33.981

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000005446	POLR2J	100	92.126	ENSANAG00000020385	-	100	92.126	Aotus_nancymaae
ENSBTAG00000005446	POLR2J	100	100.000	ENSCAFG00020013154	-	100	100.000	Canis_lupus_dingo
ENSBTAG00000005446	POLR2J	100	100.000	ENSCHIG00000009008	-	100	100.000	Capra_hircus
ENSBTAG00000005446	POLR2J	96	91.964	ENSCAPG00000013625	-	96	91.964	Cavia_aperea
ENSBTAG00000005446	POLR2J	100	100.000	ENSCCAG00000029378	-	100	100.000	Cebus_capucinus
ENSBTAG00000005446	POLR2J	50	100.000	ENSCHOG00000008325	-	91	71.287	Choloepus_hoffmanni
ENSBTAG00000005446	POLR2J	85	99.000	ENSCPBG00000027774	-	84	99.000	Chrysemys_picta_bellii
ENSBTAG00000005446	POLR2J	100	100.000	ENSECAG00000022750	-	100	100.000	Equus_caballus
ENSBTAG00000005446	POLR2J	77	97.778	ENSGGOG00000038950	-	52	97.778	Gorilla_gorilla
ENSBTAG00000005446	POLR2J	96	55.357	ENSGGOG00000043186	-	86	55.357	Gorilla_gorilla
ENSBTAG00000005446	POLR2J	50	94.915	ENSGGOG00000003934	-	85	84.722	Gorilla_gorilla
ENSBTAG00000005446	POLR2J	54	92.063	ENSLACG00000022567	-	63	89.394	Latimeria_chalumnae
ENSBTAG00000005446	POLR2J	91	99.065	ENSMFAG00000039168	-	92	100.000	Macaca_fascicularis
ENSBTAG00000005446	POLR2J	100	100.000	ENSMLEG00000033262	-	100	100.000	Mandrillus_leucophaeus
ENSBTAG00000005446	POLR2J	100	100.000	ENSMICG00000010323	-	100	100.000	Microcebus_murinus
ENSBTAG00000005446	POLR2J	100	100.000	ENSPTRG00000019132	-	100	100.000	Pan_troglodytes
ENSBTAG00000005446	POLR2J	59	85.507	ENSPTRG00000028611	-	65	82.895	Pan_troglodytes
ENSBTAG00000005446	POLR2J	77	72.222	ENSPTRG00000052689	-	60	69.697	Pan_troglodytes
ENSBTAG00000005446	POLR2J	91	74.766	ENSPTRG00000050290	-	93	73.636	Pan_troglodytes
ENSBTAG00000005446	POLR2J	100	80.342	ENSPANG00000015179	-	100	80.342	Papio_anubis
ENSBTAG00000005446	POLR2J	100	96.581	ENSPKIG00000013014	-	100	96.581	Paramormyrops_kingsleyae
ENSBTAG00000005446	POLR2J	92	99.074	ENSPCAG00000003269	-	62	99.074	Procavia_capensis
ENSBTAG00000005446	POLR2J	100	100.000	ENSRBIG00000042413	-	100	100.000	Rhinopithecus_bieti
ENSBTAG00000005446	POLR2J	98	93.043	ENSRROG00000035578	-	96	99.065	Rhinopithecus_roxellana
ENSBTAG00000005446	POLR2J	76	100.000	ENSTTRG00000014846	-	81	90.435	Tursiops_truncatus
ENSBTAG00000005446	POLR2J	91	73.832	ENSVPAG00000007077	-	73	64.179	Vicugna_pacos
ENSBTAG00000005446	POLR2J	100	100.000	ENSVVUG00000023727	-	100	100.000	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005665	RNA polymerase II, core complex	-	ISS	Component
GO:0006366	transcription by RNA polymerase II	-	ISS	Process
GO:0046983	protein dimerization activity	-	IEA	Function