EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000005478 (Gene tree)
Gene ID: 532416
Gene Symbol: PATZ1
Alias: -
Full Name: Bos taurus POZ/BTB and AT hook containing zinc finger 1 (PATZ1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 18440 bases
Position: chr17:70125940-70144379
Accession: NM_001191197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000029432	zf-C2H2	PF00096.26	2.8e-26	1	5
ENSBTAP00000029432	zf-C2H2	PF00096.26	2.8e-26	2	5
ENSBTAP00000029432	zf-C2H2	PF00096.26	2.8e-26	3	5
ENSBTAP00000029432	zf-C2H2	PF00096.26	2.8e-26	4	5
ENSBTAP00000029432	zf-C2H2	PF00096.26	2.8e-26	5	5
ENSBTAP00000065052	zf-C2H2	PF00096.26	5.6e-20	1	4
ENSBTAP00000065052	zf-C2H2	PF00096.26	5.6e-20	2	4
ENSBTAP00000065052	zf-C2H2	PF00096.26	5.6e-20	3	4
ENSBTAP00000065052	zf-C2H2	PF00096.26	5.6e-20	4	4
ENSBTAP00000060190	zf-C2H2	PF00096.26	1.6e-15	1	3
ENSBTAP00000060190	zf-C2H2	PF00096.26	1.6e-15	2	3
ENSBTAP00000060190	zf-C2H2	PF00096.26	1.6e-15	3	3
ENSBTAP00000029432	zf-met	PF12874.7	2.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000073718	-	3893	-	ENSBTAP00000060190	537 (aa)	XP_005218219	UPI0000EBDB20
ENSBTAT00000083144	-	3884	-	ENSBTAP00000065052	641 (aa)	XP_005218217	UPI0000EBDB1F
ENSBTAT00000029432	-	3165	XM_015475586	ENSBTAP00000029432	687 (aa)	XP_015331072	E1BII2

Gene Model

Click here to download ENSBTAG00000005478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000005478's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000005478	PATZ1	51	33.333	ENSBTAG00000007714	ZNF235	63	34.874
ENSBTAG00000005478	PATZ1	51	31.535	ENSBTAG00000002291	ZBTB41	59	31.535
ENSBTAG00000005478	PATZ1	53	32.948	ENSBTAG00000016077	ZNF317	75	32.948
ENSBTAG00000005478	PATZ1	65	46.429	ENSBTAG00000020854	BCL6B	59	46.429
ENSBTAG00000005478	PATZ1	87	40.741	ENSBTAG00000010113	ZBTB24	73	40.741
ENSBTAG00000005478	PATZ1	62	30.576	ENSBTAG00000049158	ZNF596	90	30.576
ENSBTAG00000005478	PATZ1	54	33.889	ENSBTAG00000040358	-	99	33.913
ENSBTAG00000005478	PATZ1	55	30.986	ENSBTAG00000030470	-	71	33.854
ENSBTAG00000005478	PATZ1	82	37.895	ENSBTAG00000038970	ZBTB14	57	36.232
ENSBTAG00000005478	PATZ1	53	36.905	ENSBTAG00000014593	-	76	36.905
ENSBTAG00000005478	PATZ1	57	30.571	ENSBTAG00000038088	-	86	30.337
ENSBTAG00000005478	PATZ1	62	30.496	ENSBTAG00000008902	ZNF345	87	30.496
ENSBTAG00000005478	PATZ1	66	41.975	ENSBTAG00000017365	ZBTB47	62	33.333
ENSBTAG00000005478	PATZ1	51	37.725	ENSBTAG00000049339	-	84	37.725
ENSBTAG00000005478	PATZ1	68	30.584	ENSBTAG00000054022	ZNF250	84	32.906
ENSBTAG00000005478	PATZ1	63	30.833	ENSBTAG00000038322	-	82	30.579
ENSBTAG00000005478	PATZ1	53	30.976	ENSBTAG00000050035	ZNF226	73	36.416
ENSBTAG00000005478	PATZ1	64	32.323	ENSBTAG00000050322	-	63	32.323
ENSBTAG00000005478	PATZ1	52	33.913	ENSBTAG00000053591	-	96	33.624
ENSBTAG00000005478	PATZ1	56	34.199	ENSBTAG00000049610	ZNF234	84	34.199
ENSBTAG00000005478	PATZ1	52	32.618	ENSBTAG00000040209	ZNF112	60	34.392
ENSBTAG00000005478	PATZ1	51	31.304	ENSBTAG00000021789	ZNF574	50	33.514
ENSBTAG00000005478	PATZ1	53	34.228	ENSBTAG00000000868	ZFP1	74	34.118
ENSBTAG00000005478	PATZ1	50	31.122	ENSBTAG00000045572	ZNF319	74	31.915

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000005478	PATZ1	100	99.220	ENSG00000100105	PATZ1	100	99.220	Homo_sapiens
ENSBTAG00000005478	PATZ1	99	59.847	ENSAPOG00000018447	patz1	100	57.331	Acanthochromis_polyacanthus
ENSBTAG00000005478	PATZ1	100	99.709	ENSAMEG00000007074	PATZ1	100	99.709	Ailuropoda_melanoleuca
ENSBTAG00000005478	PATZ1	100	60.232	ENSACIG00000016779	patz1	100	59.961	Amphilophus_citrinellus
ENSBTAG00000005478	PATZ1	100	57.563	ENSAPEG00000013354	patz1	100	57.703	Amphiprion_percula
ENSBTAG00000005478	PATZ1	100	62.353	ENSATEG00000011260	patz1	100	62.157	Anabas_testudineus
ENSBTAG00000005478	PATZ1	85	91.781	ENSAPLG00000003934	PATZ1	99	90.753	Anas_platyrhynchos
ENSBTAG00000005478	PATZ1	100	99.220	ENSANAG00000029603	PATZ1	100	99.220	Aotus_nancymaae
ENSBTAG00000005478	PATZ1	97	62.524	ENSAMXG00000002273	patz1	98	62.147	Astyanax_mexicanus
ENSBTAG00000005478	PATZ1	100	99.220	ENSCJAG00000010978	PATZ1	100	99.220	Callithrix_jacchus
ENSBTAG00000005478	PATZ1	100	99.854	ENSCAFG00000013087	PATZ1	100	99.854	Canis_familiaris
ENSBTAG00000005478	PATZ1	100	99.563	ENSCHIG00000020203	PATZ1	100	99.563	Capra_hircus
ENSBTAG00000005478	PATZ1	100	99.127	ENSTSYG00000033183	PATZ1	100	99.127	Carlito_syrichta
ENSBTAG00000005478	PATZ1	100	99.220	ENSCCAG00000028772	PATZ1	100	99.220	Cebus_capucinus
ENSBTAG00000005478	PATZ1	100	99.220	ENSCATG00000006101	PATZ1	100	99.220	Cercocebus_atys
ENSBTAG00000005478	PATZ1	100	89.130	ENSCPBG00000011277	PATZ1	100	88.116	Chrysemys_picta_bellii
ENSBTAG00000005478	PATZ1	100	99.220	ENSCANG00000024972	PATZ1	100	99.220	Colobus_angolensis_palliatus
ENSBTAG00000005478	PATZ1	100	96.943	ENSCGRG00001004071	Patz1	100	96.943	Cricetulus_griseus_chok1gshd
ENSBTAG00000005478	PATZ1	93	97.667	ENSCGRG00000004814	Patz1	100	97.667	Cricetulus_griseus_crigri
ENSBTAG00000005478	PATZ1	100	55.105	ENSCSEG00000001385	patz1	100	55.139	Cynoglossus_semilaevis
ENSBTAG00000005478	PATZ1	100	58.997	ENSCVAG00000007684	patz1	100	58.789	Cyprinodon_variegatus
ENSBTAG00000005478	PATZ1	97	60.679	ENSDARG00000076584	patz1	98	58.815	Danio_rerio
ENSBTAG00000005478	PATZ1	90	99.354	ENSDNOG00000003183	PATZ1	100	99.354	Dasypus_novemcinctus
ENSBTAG00000005478	PATZ1	100	99.563	ENSDORG00000023834	Patz1	100	99.563	Dipodomys_ordii
ENSBTAG00000005478	PATZ1	100	99.418	ENSECAG00000025030	PATZ1	100	99.418	Equus_caballus
ENSBTAG00000005478	PATZ1	99	62.075	ENSELUG00000002333	patz1	100	60.139	Esox_lucius
ENSBTAG00000005478	PATZ1	100	99.854	ENSFCAG00000030253	PATZ1	100	99.854	Felis_catus
ENSBTAG00000005478	PATZ1	86	91.864	ENSFALG00000007450	PATZ1	99	90.971	Ficedula_albicollis
ENSBTAG00000005478	PATZ1	96	97.661	ENSFDAG00000005614	PATZ1	100	97.661	Fukomys_damarensis
ENSBTAG00000005478	PATZ1	100	57.478	ENSFHEG00000014755	patz1	100	57.478	Fundulus_heteroclitus
ENSBTAG00000005478	PATZ1	98	55.230	ENSGMOG00000001062	patz1	100	54.434	Gadus_morhua
ENSBTAG00000005478	PATZ1	100	88.777	ENSGALG00000006934	PATZ1	100	88.058	Gallus_gallus
ENSBTAG00000005478	PATZ1	100	58.721	ENSGAFG00000010053	patz1	100	57.856	Gambusia_affinis
ENSBTAG00000005478	PATZ1	85	91.938	ENSGAGG00000003214	PATZ1	100	90.909	Gopherus_agassizii
ENSBTAG00000005478	PATZ1	100	99.376	ENSGGOG00000017171	PATZ1	100	99.376	Gorilla_gorilla
ENSBTAG00000005478	PATZ1	98	62.846	ENSHCOG00000017644	patz1	93	57.988	Hippocampus_comes
ENSBTAG00000005478	PATZ1	97	60.285	ENSIPUG00000017653	patz1	97	59.756	Ictalurus_punctatus
ENSBTAG00000005478	PATZ1	100	99.532	ENSSTOG00000020707	PATZ1	100	99.532	Ictidomys_tridecemlineatus
ENSBTAG00000005478	PATZ1	100	96.952	ENSJJAG00000015259	Patz1	100	96.952	Jaculus_jaculus
ENSBTAG00000005478	PATZ1	100	57.670	ENSKMAG00000008157	patz1	100	57.627	Kryptolebias_marmoratus
ENSBTAG00000005478	PATZ1	100	98.836	ENSLAFG00000002317	PATZ1	100	98.836	Loxodonta_africana
ENSBTAG00000005478	PATZ1	100	99.064	ENSMFAG00000040968	PATZ1	100	99.064	Macaca_fascicularis
ENSBTAG00000005478	PATZ1	100	99.064	ENSMNEG00000037588	PATZ1	100	99.064	Macaca_nemestrina
ENSBTAG00000005478	PATZ1	100	99.220	ENSMLEG00000030938	PATZ1	100	99.220	Mandrillus_leucophaeus
ENSBTAG00000005478	PATZ1	100	57.478	ENSMAMG00000023652	patz1	100	57.625	Mastacembelus_armatus
ENSBTAG00000005478	PATZ1	85	88.034	ENSMGAG00000008439	PATZ1	100	87.009	Meleagris_gallopavo
ENSBTAG00000005478	PATZ1	100	98.752	ENSMAUG00000004129	Patz1	100	98.752	Mesocricetus_auratus
ENSBTAG00000005478	PATZ1	100	99.418	ENSMICG00000005430	PATZ1	100	99.418	Microcebus_murinus
ENSBTAG00000005478	PATZ1	100	98.596	ENSMOCG00000014488	Patz1	100	98.596	Microtus_ochrogaster
ENSBTAG00000005478	PATZ1	99	55.078	ENSMMOG00000021679	patz1	100	54.513	Mola_mola
ENSBTAG00000005478	PATZ1	100	57.143	ENSMALG00000021172	patz1	100	56.719	Monopterus_albus
ENSBTAG00000005478	PATZ1	100	98.596	MGP_CAROLIEiJ_G0016007	Patz1	100	98.596	Mus_caroli
ENSBTAG00000005478	PATZ1	100	98.752	ENSMUSG00000020453	Patz1	100	98.752	Mus_musculus
ENSBTAG00000005478	PATZ1	100	98.752	MGP_PahariEiJ_G0016884	Patz1	100	98.752	Mus_pahari
ENSBTAG00000005478	PATZ1	100	98.752	MGP_SPRETEiJ_G0016846	Patz1	100	98.752	Mus_spretus
ENSBTAG00000005478	PATZ1	100	99.563	ENSMLUG00000009942	PATZ1	100	99.563	Myotis_lucifugus
ENSBTAG00000005478	PATZ1	100	99.064	ENSNGAG00000010268	Patz1	100	99.064	Nannospalax_galili
ENSBTAG00000005478	PATZ1	100	60.039	ENSNBRG00000016032	patz1	100	59.768	Neolamprologus_brichardi
ENSBTAG00000005478	PATZ1	68	93.978	ENSMEUG00000016293	PATZ1	99	93.966	Notamacropus_eugenii
ENSBTAG00000005478	PATZ1	100	98.690	ENSODEG00000003589	PATZ1	100	98.690	Octodon_degus
ENSBTAG00000005478	PATZ1	100	58.772	ENSONIG00000004248	patz1	100	58.565	Oreochromis_niloticus
ENSBTAG00000005478	PATZ1	100	93.469	ENSOANG00000014654	PATZ1	100	93.759	Ornithorhynchus_anatinus
ENSBTAG00000005478	PATZ1	100	58.626	ENSORLG00020010937	patz1	100	58.473	Oryzias_latipes_hni
ENSBTAG00000005478	PATZ1	100	58.003	ENSORLG00015007396	patz1	100	57.856	Oryzias_latipes_hsok
ENSBTAG00000005478	PATZ1	100	57.312	ENSOMEG00000006636	patz1	100	57.312	Oryzias_melastigma
ENSBTAG00000005478	PATZ1	100	99.272	ENSOGAG00000027905	PATZ1	100	99.272	Otolemur_garnettii
ENSBTAG00000005478	PATZ1	100	99.376	ENSPPAG00000033227	PATZ1	100	99.376	Pan_paniscus
ENSBTAG00000005478	PATZ1	100	99.854	ENSPPRG00000001573	PATZ1	100	99.854	Panthera_pardus
ENSBTAG00000005478	PATZ1	86	99.831	ENSPTIG00000007937	PATZ1	91	99.831	Panthera_tigris_altaica
ENSBTAG00000005478	PATZ1	100	99.376	ENSPTRG00000014268	PATZ1	100	99.376	Pan_troglodytes
ENSBTAG00000005478	PATZ1	100	99.220	ENSPANG00000006821	PATZ1	100	99.127	Papio_anubis
ENSBTAG00000005478	PATZ1	100	62.313	ENSPKIG00000019584	patz1	100	61.754	Paramormyrops_kingsleyae
ENSBTAG00000005478	PATZ1	58	95.707	ENSPSIG00000011562	-	100	96.000	Pelodiscus_sinensis
ENSBTAG00000005478	PATZ1	60	83.535	ENSPSIG00000016553	-	91	82.809	Pelodiscus_sinensis
ENSBTAG00000005478	PATZ1	100	57.022	ENSPMGG00000010196	patz1	100	57.022	Periophthalmus_magnuspinnatus
ENSBTAG00000005478	PATZ1	100	98.752	ENSPEMG00000005321	Patz1	100	98.752	Peromyscus_maniculatus_bairdii
ENSBTAG00000005478	PATZ1	100	57.478	ENSPLAG00000010425	patz1	100	57.625	Poecilia_latipinna
ENSBTAG00000005478	PATZ1	100	57.562	ENSPMEG00000000255	patz1	100	57.709	Poecilia_mexicana
ENSBTAG00000005478	PATZ1	100	56.906	ENSPREG00000002440	patz1	100	57.044	Poecilia_reticulata
ENSBTAG00000005478	PATZ1	100	98.981	ENSPPYG00000011732	PATZ1	100	98.981	Pongo_abelii
ENSBTAG00000005478	PATZ1	100	99.272	ENSPCOG00000019729	PATZ1	100	99.272	Propithecus_coquereli
ENSBTAG00000005478	PATZ1	100	99.709	ENSPVAG00000001749	PATZ1	100	99.709	Pteropus_vampyrus
ENSBTAG00000005478	PATZ1	100	59.244	ENSPNYG00000013542	patz1	100	59.046	Pundamilia_nyererei
ENSBTAG00000005478	PATZ1	84	60.130	ENSPNAG00000017222	patz1	99	58.439	Pygocentrus_nattereri
ENSBTAG00000005478	PATZ1	100	99.220	ENSRBIG00000044231	PATZ1	100	99.220	Rhinopithecus_bieti
ENSBTAG00000005478	PATZ1	100	99.220	ENSRROG00000037155	PATZ1	100	99.220	Rhinopithecus_roxellana
ENSBTAG00000005478	PATZ1	100	99.220	ENSSBOG00000003894	PATZ1	100	99.220	Saimiri_boliviensis_boliviensis
ENSBTAG00000005478	PATZ1	79	88.462	ENSSFOG00015013244	patz1	78	88.462	Scleropages_formosus
ENSBTAG00000005478	PATZ1	100	86.913	ENSSPUG00000015298	PATZ1	100	86.060	Sphenodon_punctatus
ENSBTAG00000005478	PATZ1	85	99.313	ENSSSCG00000010027	PATZ1	100	99.313	Sus_scrofa
ENSBTAG00000005478	PATZ1	100	57.655	ENSTRUG00000015366	patz1	100	59.417	Takifugu_rubripes
ENSBTAG00000005478	PATZ1	100	99.709	ENSTTRG00000010279	PATZ1	100	99.709	Tursiops_truncatus
ENSBTAG00000005478	PATZ1	100	99.844	ENSUAMG00000015014	PATZ1	100	99.844	Ursus_americanus
ENSBTAG00000005478	PATZ1	100	73.043	ENSXETG00000004190	patz1	100	72.319	Xenopus_tropicalis
ENSBTAG00000005478	PATZ1	100	57.856	ENSXMAG00000015531	patz1	100	58.003	Xiphophorus_maculatus