EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000005743 (Gene tree)
Gene ID: 281492
Gene Symbol: SMN2
Alias: SMN|SMN1
Full Name: Bos taurus survival of motor neuron 2%2C centromeric (SMN2)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 31954 bases
Position: chr20:10105978-10137931
Accession: NM_175701
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000007547	TUDOR	PF00567.24	2.7e-05	1	1
ENSBTAP00000066437	TUDOR	PF00567.24	2.9e-05	1	1
ENSBTAP00000071442	TUDOR	PF00567.24	3.2e-05	1	1
ENSBTAP00000007547	SMN	PF06003.12	2.9e-103	1	1
ENSBTAP00000066437	SMN	PF06003.12	1.7e-102	1	1
ENSBTAP00000071442	SMN	PF06003.12	1.3e-98	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000069878	-	897	-	ENSBTAP00000066437	298 (aa)	-	-
ENSBTAT00000007547	-	973	-	ENSBTAP00000007547	287 (aa)	-	O18870
ENSBTAT00000080447	-	992	-	ENSBTAP00000071442	317 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000005743's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000005743's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000005743	SMN2	97	83.986	ENSG00000172062	SMN1	95	84.328	Homo_sapiens
ENSBTAG00000005743	SMN2	97	83.986	ENSG00000205571	SMN2	87	92.500	Homo_sapiens
ENSBTAG00000005743	SMN2	93	50.542	ENSAPOG00000011324	smn1	94	52.482	Acanthochromis_polyacanthus
ENSBTAG00000005743	SMN2	98	87.589	ENSAMEG00000003316	-	93	87.589	Ailuropoda_melanoleuca
ENSBTAG00000005743	SMN2	89	48.708	ENSACIG00000019772	-	97	49.807	Amphilophus_citrinellus
ENSBTAG00000005743	SMN2	93	50.725	ENSAOCG00000024444	smn1	94	51.799	Amphiprion_ocellaris
ENSBTAG00000005743	SMN2	93	52.347	ENSAPEG00000016504	smn1	94	52.158	Amphiprion_percula
ENSBTAG00000005743	SMN2	91	52.190	ENSATEG00000002182	smn1	92	49.675	Anabas_testudineus
ENSBTAG00000005743	SMN2	68	59.898	ENSAPLG00000010912	-	96	58.376	Anas_platyrhynchos
ENSBTAG00000005743	SMN2	94	56.475	ENSACAG00000010017	-	95	58.781	Anolis_carolinensis
ENSBTAG00000005743	SMN2	99	80.623	ENSANAG00000032133	-	95	81.851	Aotus_nancymaae
ENSBTAG00000005743	SMN2	54	60.645	ENSACLG00000007308	smn1	97	49.498	Astatotilapia_calliptera
ENSBTAG00000005743	SMN2	82	44.364	ENSAMXG00000013884	smn1	97	48.780	Astyanax_mexicanus
ENSBTAG00000005743	SMN2	97	83.274	ENSCJAG00000016290	-	95	82.979	Callithrix_jacchus
ENSBTAG00000005743	SMN2	98	86.879	ENSCAFG00000007812	SMN	97	86.879	Canis_familiaris
ENSBTAG00000005743	SMN2	97	86.833	ENSCAFG00020019229	-	90	86.833	Canis_lupus_dingo
ENSBTAG00000005743	SMN2	99	96.875	ENSCHIG00000015559	-	98	96.875	Capra_hircus
ENSBTAG00000005743	SMN2	99	85.017	ENSTSYG00000012058	-	96	86.331	Carlito_syrichta
ENSBTAG00000005743	SMN2	77	68.722	ENSCAPG00000011021	-	100	67.811	Cavia_aperea
ENSBTAG00000005743	SMN2	99	78.498	ENSCPOG00000012328	-	97	80.556	Cavia_porcellus
ENSBTAG00000005743	SMN2	99	78.819	ENSCPOG00000036973	-	96	80.919	Cavia_porcellus
ENSBTAG00000005743	SMN2	97	82.500	ENSCCAG00000018127	-	95	82.500	Cebus_capucinus
ENSBTAG00000005743	SMN2	97	83.986	ENSCATG00000037002	-	95	84.328	Cercocebus_atys
ENSBTAG00000005743	SMN2	99	78.157	ENSCLAG00000000284	-	96	78.947	Chinchilla_lanigera
ENSBTAG00000005743	SMN2	97	81.851	ENSCSAG00000015688	-	95	83.986	Chlorocebus_sabaeus
ENSBTAG00000005743	SMN2	87	74.502	ENSCHOG00000007346	-	100	71.264	Choloepus_hoffmanni
ENSBTAG00000005743	SMN2	98	60.702	ENSCPBG00000010968	-	96	62.595	Chrysemys_picta_bellii
ENSBTAG00000005743	SMN2	97	83.929	ENSCANG00000038242	-	95	84.906	Colobus_angolensis_palliatus
ENSBTAG00000005743	SMN2	95	79.710	ENSCANG00000033324	-	91	80.741	Colobus_angolensis_palliatus
ENSBTAG00000005743	SMN2	99	60.140	ENSCGRG00001016998	-	96	62.007	Cricetulus_griseus_chok1gshd
ENSBTAG00000005743	SMN2	99	79.094	ENSCGRG00001017959	-	97	80.357	Cricetulus_griseus_chok1gshd
ENSBTAG00000005743	SMN2	99	79.094	ENSCGRG00000007698	Smn1	97	80.357	Cricetulus_griseus_crigri
ENSBTAG00000005743	SMN2	93	44.948	ENSCSEG00000015227	smn1	97	50.714	Cynoglossus_semilaevis
ENSBTAG00000005743	SMN2	94	50.709	ENSCVAG00000007498	smn1	95	53.791	Cyprinodon_variegatus
ENSBTAG00000005743	SMN2	95	45.791	ENSDARG00000018494	smn1	96	49.488	Danio_rerio
ENSBTAG00000005743	SMN2	84	83.471	ENSDNOG00000007283	-	100	83.471	Dasypus_novemcinctus
ENSBTAG00000005743	SMN2	79	69.737	ENSDNOG00000045949	-	86	69.756	Dasypus_novemcinctus
ENSBTAG00000005743	SMN2	97	74.286	ENSDORG00000007082	Smn1	98	73.214	Dipodomys_ordii
ENSBTAG00000005743	SMN2	70	67.647	ENSETEG00000001406	-	96	69.347	Echinops_telfairi
ENSBTAG00000005743	SMN2	96	38.488	ENSEBUG00000011902	smn1	98	36.364	Eptatretus_burgeri
ENSBTAG00000005743	SMN2	94	75.912	ENSEASG00005018000	-	89	82.937	Equus_asinus_asinus
ENSBTAG00000005743	SMN2	97	84.752	ENSECAG00000015215	-	97	86.525	Equus_caballus
ENSBTAG00000005743	SMN2	87	79.283	ENSEEUG00000015777	-	100	79.283	Erinaceus_europaeus
ENSBTAG00000005743	SMN2	93	52.727	ENSELUG00000018067	smn1	94	51.971	Esox_lucius
ENSBTAG00000005743	SMN2	99	85.714	ENSFCAG00000028292	SMN	97	85.816	Felis_catus
ENSBTAG00000005743	SMN2	92	61.111	ENSFALG00000012320	-	94	61.338	Ficedula_albicollis
ENSBTAG00000005743	SMN2	99	78.082	ENSFDAG00000017683	-	96	78.397	Fukomys_damarensis
ENSBTAG00000005743	SMN2	62	52.247	ENSFHEG00000018508	smn1	96	52.574	Fundulus_heteroclitus
ENSBTAG00000005743	SMN2	96	50.903	ENSGMOG00000017279	smn1	92	47.955	Gadus_morhua
ENSBTAG00000005743	SMN2	93	60.370	ENSGALG00000002430	SMN	95	60.000	Gallus_gallus
ENSBTAG00000005743	SMN2	93	52.347	ENSGAFG00000009501	smn1	94	51.449	Gambusia_affinis
ENSBTAG00000005743	SMN2	93	49.817	ENSGACG00000010584	smn1	91	52.612	Gasterosteus_aculeatus
ENSBTAG00000005743	SMN2	93	37.209	ENSGAGG00000013639	-	87	41.593	Gopherus_agassizii
ENSBTAG00000005743	SMN2	98	59.298	ENSGAGG00000011374	-	94	61.397	Gopherus_agassizii
ENSBTAG00000005743	SMN2	63	83.696	ENSGGOG00000026704	-	94	82.178	Gorilla_gorilla
ENSBTAG00000005743	SMN2	95	70.758	ENSGGOG00000003872	-	96	74.906	Gorilla_gorilla
ENSBTAG00000005743	SMN2	93	49.438	ENSHBUG00000013987	smn1	94	53.430	Haplochromis_burtoni
ENSBTAG00000005743	SMN2	99	78.082	ENSHGLG00000001018	-	96	78.397	Heterocephalus_glaber_female
ENSBTAG00000005743	SMN2	99	77.193	ENSHGLG00000001905	-	98	77.500	Heterocephalus_glaber_female
ENSBTAG00000005743	SMN2	95	76.642	ENSHGLG00100018676	-	97	77.239	Heterocephalus_glaber_male
ENSBTAG00000005743	SMN2	99	78.082	ENSHGLG00100011252	-	96	78.397	Heterocephalus_glaber_male
ENSBTAG00000005743	SMN2	90	49.627	ENSHCOG00000017136	smn1	87	47.584	Hippocampus_comes
ENSBTAG00000005743	SMN2	95	50.182	ENSIPUG00000012580	smn1	86	50.890	Ictalurus_punctatus
ENSBTAG00000005743	SMN2	92	85.660	ENSSTOG00000012288	-	96	85.393	Ictidomys_tridecemlineatus
ENSBTAG00000005743	SMN2	60	63.584	ENSJJAG00000014853	-	100	63.684	Jaculus_jaculus
ENSBTAG00000005743	SMN2	95	52.448	ENSKMAG00000007239	smn1	99	51.119	Kryptolebias_marmoratus
ENSBTAG00000005743	SMN2	93	53.405	ENSLBEG00000022550	smn1	94	54.212	Labrus_bergylta
ENSBTAG00000005743	SMN2	93	36.842	ENSLACG00000009808	-	93	39.041	Latimeria_chalumnae
ENSBTAG00000005743	SMN2	92	30.996	ENSLOCG00000000801	-	85	30.851	Lepisosteus_oculatus
ENSBTAG00000005743	SMN2	93	51.301	ENSLOCG00000011339	smn1	94	51.071	Lepisosteus_oculatus
ENSBTAG00000005743	SMN2	99	82.131	ENSLAFG00000003425	-	93	82.168	Loxodonta_africana
ENSBTAG00000005743	SMN2	96	80.287	ENSMFAG00000008812	-	95	80.287	Macaca_fascicularis
ENSBTAG00000005743	SMN2	97	84.342	ENSMFAG00000031523	SMN1	96	84.528	Macaca_fascicularis
ENSBTAG00000005743	SMN2	97	84.342	ENSMMUG00000020214	SMN1	95	84.701	Macaca_mulatta
ENSBTAG00000005743	SMN2	96	79.570	ENSMMUG00000030594	-	95	79.570	Macaca_mulatta
ENSBTAG00000005743	SMN2	97	83.986	ENSMNEG00000035094	-	95	84.701	Macaca_nemestrina
ENSBTAG00000005743	SMN2	78	70.044	ENSMNEG00000036423	-	86	71.041	Macaca_nemestrina
ENSBTAG00000005743	SMN2	95	84.838	ENSMLEG00000041902	-	94	85.227	Mandrillus_leucophaeus
ENSBTAG00000005743	SMN2	93	50.883	ENSMAMG00000011034	smn1	94	51.282	Mastacembelus_armatus
ENSBTAG00000005743	SMN2	93	49.064	ENSMZEG00005013634	smn1	94	53.571	Maylandia_zebra
ENSBTAG00000005743	SMN2	68	57.436	ENSMGAG00000008889	-	94	56.923	Meleagris_gallopavo
ENSBTAG00000005743	SMN2	99	78.397	ENSMAUG00000010262	Smn1	97	79.643	Mesocricetus_auratus
ENSBTAG00000005743	SMN2	78	82.096	ENSMICG00000034708	-	93	82.895	Microcebus_murinus
ENSBTAG00000005743	SMN2	99	75.175	ENSMOCG00000017833	Smn1	97	77.419	Microtus_ochrogaster
ENSBTAG00000005743	SMN2	93	45.455	ENSMMOG00000005504	smn1	97	48.029	Mola_mola
ENSBTAG00000005743	SMN2	100	68.276	ENSMODG00000001436	-	95	69.039	Monodelphis_domestica
ENSBTAG00000005743	SMN2	93	51.812	ENSMALG00000008025	smn1	94	52.536	Monopterus_albus
ENSBTAG00000005743	SMN2	100	77.241	MGP_CAROLIEiJ_G0018836	Smn1	97	79.359	Mus_caroli
ENSBTAG00000005743	SMN2	100	76.897	ENSMUSG00000021645	Smn1	97	78.648	Mus_musculus
ENSBTAG00000005743	SMN2	100	76.125	MGP_PahariEiJ_G0015911	Smn1	97	77.500	Mus_pahari
ENSBTAG00000005743	SMN2	100	77.241	MGP_SPRETEiJ_G0019718	Smn1	97	79.359	Mus_spretus
ENSBTAG00000005743	SMN2	94	88.645	ENSMPUG00000014470	-	95	88.476	Mustela_putorius_furo
ENSBTAG00000005743	SMN2	97	87.108	ENSMLUG00000010603	-	92	87.108	Myotis_lucifugus
ENSBTAG00000005743	SMN2	99	78.596	ENSNGAG00000019833	Smn1	97	81.071	Nannospalax_galili
ENSBTAG00000005743	SMN2	93	49.627	ENSNBRG00000023000	smn1	94	53.333	Neolamprologus_brichardi
ENSBTAG00000005743	SMN2	99	83.972	ENSNLEG00000004454	-	95	84.328	Nomascus_leucogenys
ENSBTAG00000005743	SMN2	78	64.758	ENSMEUG00000011393	-	99	65.789	Notamacropus_eugenii
ENSBTAG00000005743	SMN2	87	78.261	ENSOPRG00000002015	-	100	79.447	Ochotona_princeps
ENSBTAG00000005743	SMN2	94	80.882	ENSODEG00000015976	-	97	80.727	Octodon_degus
ENSBTAG00000005743	SMN2	82	47.710	ENSONIG00000011799	smn1	95	52.941	Oreochromis_niloticus
ENSBTAG00000005743	SMN2	95	63.406	ENSOANG00000001626	-	96	64.493	Ornithorhynchus_anatinus
ENSBTAG00000005743	SMN2	99	75.342	ENSOCUG00000025183	-	98	76.408	Oryctolagus_cuniculus
ENSBTAG00000005743	SMN2	100	81.661	ENSOCUG00000017097	-	95	83.571	Oryctolagus_cuniculus
ENSBTAG00000005743	SMN2	99	79.863	ENSOCUG00000026649	-	95	81.690	Oryctolagus_cuniculus
ENSBTAG00000005743	SMN2	93	47.778	ENSORLG00000010552	smn1	94	52.593	Oryzias_latipes
ENSBTAG00000005743	SMN2	93	52.612	ENSORLG00020007936	smn1	93	52.222	Oryzias_latipes_hni
ENSBTAG00000005743	SMN2	81	46.743	ENSORLG00015022425	smn1	94	51.852	Oryzias_latipes_hsok
ENSBTAG00000005743	SMN2	93	48.519	ENSOMEG00000007824	smn1	94	53.846	Oryzias_melastigma
ENSBTAG00000005743	SMN2	92	76.103	ENSOGAG00000031414	-	94	75.277	Otolemur_garnettii
ENSBTAG00000005743	SMN2	95	94.139	ENSOARG00000005425	-	100	94.139	Ovis_aries
ENSBTAG00000005743	SMN2	97	83.986	ENSPPAG00000036640	-	95	84.328	Pan_paniscus
ENSBTAG00000005743	SMN2	99	86.063	ENSPPRG00000005575	-	97	86.170	Panthera_pardus
ENSBTAG00000005743	SMN2	99	85.764	ENSPTIG00000007745	-	97	85.866	Panthera_tigris_altaica
ENSBTAG00000005743	SMN2	97	82.746	ENSPTRG00000016955	-	95	83.395	Pan_troglodytes
ENSBTAG00000005743	SMN2	99	84.321	ENSPANG00000013601	-	95	84.342	Papio_anubis
ENSBTAG00000005743	SMN2	95	80.144	ENSPANG00000000253	-	94	80.505	Papio_anubis
ENSBTAG00000005743	SMN2	93	50.542	ENSPKIG00000011096	smn1	94	52.045	Paramormyrops_kingsleyae
ENSBTAG00000005743	SMN2	92	58.845	ENSPSIG00000014787	-	87	60.650	Pelodiscus_sinensis
ENSBTAG00000005743	SMN2	93	47.464	ENSPMGG00000012285	smn1	94	50.368	Periophthalmus_magnuspinnatus
ENSBTAG00000005743	SMN2	97	41.404	ENSPMAG00000005004	smn1	97	39.298	Petromyzon_marinus
ENSBTAG00000005743	SMN2	100	68.966	ENSPCIG00000025764	-	97	69.751	Phascolarctos_cinereus
ENSBTAG00000005743	SMN2	93	51.799	ENSPFOG00000007786	smn1	94	52.381	Poecilia_formosa
ENSBTAG00000005743	SMN2	93	52.158	ENSPLAG00000012071	smn1	94	52.747	Poecilia_latipinna
ENSBTAG00000005743	SMN2	93	51.799	ENSPMEG00000017085	smn1	94	52.381	Poecilia_mexicana
ENSBTAG00000005743	SMN2	93	53.430	ENSPREG00000005824	smn1	94	52.536	Poecilia_reticulata
ENSBTAG00000005743	SMN2	86	53.815	ENSPPYG00000019189	-	99	53.012	Pongo_abelii
ENSBTAG00000005743	SMN2	92	83.521	ENSPPYG00000015533	-	96	83.774	Pongo_abelii
ENSBTAG00000005743	SMN2	92	75.277	ENSPCAG00000004187	-	100	76.384	Procavia_capensis
ENSBTAG00000005743	SMN2	69	80.392	ENSPCOG00000022307	-	91	79.808	Propithecus_coquereli
ENSBTAG00000005743	SMN2	97	87.900	ENSPVAG00000005977	-	96	87.589	Pteropus_vampyrus
ENSBTAG00000005743	SMN2	93	49.627	ENSPNYG00000014148	smn1	94	53.333	Pundamilia_nyererei
ENSBTAG00000005743	SMN2	93	46.097	ENSPNAG00000014007	smn1	83	49.643	Pygocentrus_nattereri
ENSBTAG00000005743	SMN2	100	74.828	ENSRNOG00000018067	Smn1	97	75.801	Rattus_norvegicus
ENSBTAG00000005743	SMN2	96	71.886	ENSRBIG00000036775	-	93	73.091	Rhinopithecus_bieti
ENSBTAG00000005743	SMN2	96	84.588	ENSRBIG00000037052	-	95	84.588	Rhinopithecus_bieti
ENSBTAG00000005743	SMN2	96	84.588	ENSRROG00000039399	-	95	84.588	Rhinopithecus_roxellana
ENSBTAG00000005743	SMN2	99	71.181	ENSRROG00000031088	-	95	71.986	Rhinopithecus_roxellana
ENSBTAG00000005743	SMN2	84	76.096	ENSSBOG00000020112	-	91	73.764	Saimiri_boliviensis_boliviensis
ENSBTAG00000005743	SMN2	97	81.362	ENSSBOG00000011665	-	95	82.143	Saimiri_boliviensis_boliviensis
ENSBTAG00000005743	SMN2	100	68.966	ENSSHAG00000001499	-	100	67.391	Sarcophilus_harrisii
ENSBTAG00000005743	SMN2	93	50.545	ENSSFOG00015015507	smn1	94	51.071	Scleropages_formosus
ENSBTAG00000005743	SMN2	93	49.104	ENSSMAG00000007922	smn1	94	51.449	Scophthalmus_maximus
ENSBTAG00000005743	SMN2	93	50.903	ENSSDUG00000018533	smn1	94	52.941	Seriola_dumerili
ENSBTAG00000005743	SMN2	93	51.264	ENSSLDG00000021135	smn1	94	53.309	Seriola_lalandi_dorsalis
ENSBTAG00000005743	SMN2	98	60.915	ENSSPUG00000000373	-	93	64.179	Sphenodon_punctatus
ENSBTAG00000005743	SMN2	93	52.536	ENSSPAG00000004345	smn1	94	52.899	Stegastes_partitus
ENSBTAG00000005743	SMN2	97	83.630	ENSSSCG00000016970	-	96	87.589	Sus_scrofa
ENSBTAG00000005743	SMN2	98	62.411	ENSSSCG00000029127	-	94	64.184	Sus_scrofa
ENSBTAG00000005743	SMN2	74	57.277	ENSSSCG00000033865	-	95	57.674	Sus_scrofa
ENSBTAG00000005743	SMN2	94	58.633	ENSTGUG00000001548	-	96	60.075	Taeniopygia_guttata
ENSBTAG00000005743	SMN2	93	47.350	ENSTRUG00000000736	smn	96	47.350	Takifugu_rubripes
ENSBTAG00000005743	SMN2	94	50.357	ENSTNIG00000009892	smn1	95	51.579	Tetraodon_nigroviridis
ENSBTAG00000005743	SMN2	63	82.609	ENSTBEG00000002399	-	95	83.756	Tupaia_belangeri
ENSBTAG00000005743	SMN2	98	85.816	ENSTTRG00000005080	-	96	86.879	Tursiops_truncatus
ENSBTAG00000005743	SMN2	63	87.500	ENSUAMG00000024947	-	74	86.341	Ursus_americanus
ENSBTAG00000005743	SMN2	98	88.298	ENSUMAG00000007842	-	72	88.298	Ursus_maritimus
ENSBTAG00000005743	SMN2	92	74.157	ENSVPAG00000009887	-	96	74.532	Vicugna_pacos
ENSBTAG00000005743	SMN2	98	86.879	ENSVVUG00000006934	-	97	86.879	Vulpes_vulpes
ENSBTAG00000005743	SMN2	95	55.160	ENSXETG00000018189	smn2	93	55.477	Xenopus_tropicalis
ENSBTAG00000005743	SMN2	50	43.448	ENSXETG00000004912	-	79	60.317	Xenopus_tropicalis
ENSBTAG00000005743	SMN2	94	52.688	ENSXMAG00000001521	smn1	95	51.439	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	-	ISS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	ISS	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0005829	cytosol	-	ISS	Component
GO:0006353	DNA-templated transcription, termination	-	ISS	Process
GO:0007399	nervous system development	-	IEA	Process
GO:0015030	Cajal body	-	ISS	Component
GO:0030018	Z disc	-	IEA	Component
GO:0032797	SMN complex	-	ISS	Component
GO:0034719	SMN-Sm protein complex	-	ISS	Component
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISS	Component
GO:0043005	neuron projection	-	ISS	Component
GO:0043204	perikaryon	-	ISS	Component
GO:0097504	Gemini of coiled bodies	-	ISS	Component