EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000006250 (Gene tree)
Gene ID: 531673
Gene Symbol: CASC3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 22735 bases
Position: chr19:40432365-40455099
Accession: 54702
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000008203	Btz	PF09405.10	1.4e-23	1	1
ENSBTAP00000060492	Btz	PF09405.10	1.5e-23	1	1
ENSBTAP00000072025	Btz	PF09405.10	1.5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000008203	-	4819	-	ENSBTAP00000008203	703 (aa)	XP_005220790	A5D7H5
ENSBTAT00000079130	-	4781	-	ENSBTAP00000072025	720 (aa)	-	-
ENSBTAT00000072744	-	2103	-	ENSBTAP00000060492	700 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000006250's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000006250's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000006250	CASC3	100	93.314	ENSG00000108349	CASC3	100	93.314	Homo_sapiens
ENSBTAG00000006250	CASC3	100	95.733	ENSAMEG00000007764	CASC3	100	95.733	Ailuropoda_melanoleuca
ENSBTAG00000006250	CASC3	84	53.722	ENSAOCG00000016676	casc3	78	53.526	Amphiprion_ocellaris
ENSBTAG00000006250	CASC3	63	67.114	ENSAPEG00000006787	casc3	78	53.526	Amphiprion_percula
ENSBTAG00000006250	CASC3	64	65.584	ENSATEG00000017196	casc3	70	54.800	Anabas_testudineus
ENSBTAG00000006250	CASC3	91	73.077	ENSACAG00000002674	CASC3	99	68.219	Anolis_carolinensis
ENSBTAG00000006250	CASC3	66	97.642	ENSANAG00000031954	-	100	97.642	Aotus_nancymaae
ENSBTAG00000006250	CASC3	99	81.988	ENSANAG00000034820	-	99	86.431	Aotus_nancymaae
ENSBTAG00000006250	CASC3	64	67.532	ENSACLG00000016198	casc3	81	54.574	Astatotilapia_calliptera
ENSBTAG00000006250	CASC3	100	91.607	ENSCJAG00000016032	CASC3	100	91.607	Callithrix_jacchus
ENSBTAG00000006250	CASC3	100	96.159	ENSCAFG00000016141	CASC3	100	96.159	Canis_familiaris
ENSBTAG00000006250	CASC3	100	95.455	ENSCAFG00020018882	CASC3	100	95.455	Canis_lupus_dingo
ENSBTAG00000006250	CASC3	100	99.000	ENSCHIG00000006338	CASC3	100	99.000	Capra_hircus
ENSBTAG00000006250	CASC3	100	87.767	ENSTSYG00000002975	CASC3	89	94.222	Carlito_syrichta
ENSBTAG00000006250	CASC3	88	88.636	ENSCAPG00000010514	CASC3	100	88.636	Cavia_aperea
ENSBTAG00000006250	CASC3	100	88.336	ENSCPOG00000015139	CASC3	100	88.051	Cavia_porcellus
ENSBTAG00000006250	CASC3	100	91.903	ENSCCAG00000033620	CASC3	100	92.045	Cebus_capucinus
ENSBTAG00000006250	CASC3	100	94.034	ENSCATG00000033593	CASC3	100	94.034	Cercocebus_atys
ENSBTAG00000006250	CASC3	100	89.616	ENSCLAG00000013730	CASC3	100	89.474	Chinchilla_lanigera
ENSBTAG00000006250	CASC3	100	94.034	ENSCSAG00000002777	CASC3	100	94.034	Chlorocebus_sabaeus
ENSBTAG00000006250	CASC3	99	74.755	ENSCPBG00000004750	CASC3	99	74.719	Chrysemys_picta_bellii
ENSBTAG00000006250	CASC3	100	93.892	ENSCANG00000008814	CASC3	100	93.892	Colobus_angolensis_palliatus
ENSBTAG00000006250	CASC3	100	92.319	ENSCGRG00001014706	Casc3	100	92.176	Cricetulus_griseus_chok1gshd
ENSBTAG00000006250	CASC3	100	85.064	ENSCGRG00000001952	Casc3	96	91.974	Cricetulus_griseus_crigri
ENSBTAG00000006250	CASC3	82	51.780	ENSCSEG00000010047	casc3	75	51.133	Cynoglossus_semilaevis
ENSBTAG00000006250	CASC3	100	94.026	ENSDNOG00000017249	CASC3	96	94.026	Dasypus_novemcinctus
ENSBTAG00000006250	CASC3	100	86.629	ENSETEG00000013720	CASC3	100	86.486	Echinops_telfairi
ENSBTAG00000006250	CASC3	99	37.533	ENSEBUG00000010654	casc3	98	37.401	Eptatretus_burgeri
ENSBTAG00000006250	CASC3	100	95.170	ENSEASG00005002909	CASC3	100	95.562	Equus_asinus_asinus
ENSBTAG00000006250	CASC3	100	96.159	ENSECAG00000019947	CASC3	88	96.159	Equus_caballus
ENSBTAG00000006250	CASC3	73	90.234	ENSEEUG00000014253	CASC3	100	90.234	Erinaceus_europaeus
ENSBTAG00000006250	CASC3	100	95.590	ENSFCAG00000014998	CASC3	100	95.590	Felis_catus
ENSBTAG00000006250	CASC3	88	73.865	ENSFALG00000000412	CASC3	98	74.057	Ficedula_albicollis
ENSBTAG00000006250	CASC3	93	88.226	ENSFDAG00000020696	CASC3	100	88.226	Fukomys_damarensis
ENSBTAG00000006250	CASC3	64	67.097	ENSFHEG00000015793	casc3	78	53.459	Fundulus_heteroclitus
ENSBTAG00000006250	CASC3	90	76.730	ENSGALG00000031813	CASC3	99	71.449	Gallus_gallus
ENSBTAG00000006250	CASC3	61	66.667	ENSGAFG00000017148	casc3	67	50.000	Gambusia_affinis
ENSBTAG00000006250	CASC3	88	78.352	ENSGAGG00000008432	CASC3	94	78.352	Gopherus_agassizii
ENSBTAG00000006250	CASC3	100	93.030	ENSGGOG00000005067	CASC3	100	93.030	Gorilla_gorilla
ENSBTAG00000006250	CASC3	64	68.182	ENSHBUG00000013155	casc3	81	54.574	Haplochromis_burtoni
ENSBTAG00000006250	CASC3	100	89.616	ENSHGLG00000012117	CASC3	100	89.616	Heterocephalus_glaber_female
ENSBTAG00000006250	CASC3	89	89.137	ENSHGLG00100002268	CASC3	99	89.085	Heterocephalus_glaber_male
ENSBTAG00000006250	CASC3	100	93.599	ENSSTOG00000006374	CASC3	100	93.599	Ictidomys_tridecemlineatus
ENSBTAG00000006250	CASC3	100	89.773	ENSJJAG00000023525	Casc3	100	89.915	Jaculus_jaculus
ENSBTAG00000006250	CASC3	64	63.025	ENSKMAG00000019507	casc3	81	49.303	Kryptolebias_marmoratus
ENSBTAG00000006250	CASC3	64	67.832	ENSLBEG00000005435	casc3	77	52.681	Labrus_bergylta
ENSBTAG00000006250	CASC3	90	60.583	ENSLACG00000013200	CASC3	99	58.127	Latimeria_chalumnae
ENSBTAG00000006250	CASC3	77	68.103	ENSLOCG00000013518	casc3	74	65.517	Lepisosteus_oculatus
ENSBTAG00000006250	CASC3	100	93.030	ENSLAFG00000000606	CASC3	100	93.030	Loxodonta_africana
ENSBTAG00000006250	CASC3	100	94.034	ENSMFAG00000041496	CASC3	100	95.695	Macaca_fascicularis
ENSBTAG00000006250	CASC3	100	94.034	ENSMMUG00000045187	CASC3	100	94.034	Macaca_mulatta
ENSBTAG00000006250	CASC3	89	93.780	ENSMLEG00000029049	CASC3	98	93.750	Mandrillus_leucophaeus
ENSBTAG00000006250	CASC3	82	52.848	ENSMAMG00000005235	casc3	77	56.641	Mastacembelus_armatus
ENSBTAG00000006250	CASC3	64	67.532	ENSMZEG00005003815	casc3	81	54.574	Maylandia_zebra
ENSBTAG00000006250	CASC3	86	75.493	ENSMGAG00000013247	CASC3	99	73.984	Meleagris_gallopavo
ENSBTAG00000006250	CASC3	71	90.400	ENSMAUG00000006023	Casc3	100	75.533	Mesocricetus_auratus
ENSBTAG00000006250	CASC3	100	91.477	ENSMICG00000003321	CASC3	100	92.614	Microcebus_murinus
ENSBTAG00000006250	CASC3	100	91.323	ENSMOCG00000013644	Casc3	100	90.185	Microtus_ochrogaster
ENSBTAG00000006250	CASC3	100	78.014	ENSMODG00000013044	CASC3	92	80.284	Monodelphis_domestica
ENSBTAG00000006250	CASC3	100	90.896	MGP_CAROLIEiJ_G0017099	Casc3	100	90.896	Mus_caroli
ENSBTAG00000006250	CASC3	100	90.185	ENSMUSG00000078676	Casc3	100	90.185	Mus_musculus
ENSBTAG00000006250	CASC3	100	90.185	MGP_SPRETEiJ_G0017943	Casc3	100	90.185	Mus_spretus
ENSBTAG00000006250	CASC3	100	95.448	ENSMPUG00000014903	CASC3	100	95.448	Mustela_putorius_furo
ENSBTAG00000006250	CASC3	100	92.340	ENSMLUG00000010520	CASC3	100	93.475	Myotis_lucifugus
ENSBTAG00000006250	CASC3	100	90.612	ENSNGAG00000023121	Casc3	100	91.038	Nannospalax_galili
ENSBTAG00000006250	CASC3	100	92.319	ENSNLEG00000001598	CASC3	100	92.319	Nomascus_leucogenys
ENSBTAG00000006250	CASC3	83	93.827	ENSMEUG00000015662	CASC3	97	71.900	Notamacropus_eugenii
ENSBTAG00000006250	CASC3	73	89.062	ENSOPRG00000007240	-	79	100.000	Ochotona_princeps
ENSBTAG00000006250	CASC3	100	88.527	ENSODEG00000017858	CASC3	100	88.810	Octodon_degus
ENSBTAG00000006250	CASC3	64	68.182	ENSONIG00000009337	casc3	99	49.302	Oreochromis_niloticus
ENSBTAG00000006250	CASC3	64	68.627	ENSOANG00000003499	-	82	69.307	Ornithorhynchus_anatinus
ENSBTAG00000006250	CASC3	100	93.457	ENSOCUG00000002954	CASC3	100	93.741	Oryctolagus_cuniculus
ENSBTAG00000006250	CASC3	99	93.705	ENSOGAG00000034486	CASC3	98	93.705	Otolemur_garnettii
ENSBTAG00000006250	CASC3	100	99.431	ENSOARG00000013239	CASC3	100	99.431	Ovis_aries
ENSBTAG00000006250	CASC3	100	93.314	ENSPPAG00000035069	CASC3	100	93.314	Pan_paniscus
ENSBTAG00000006250	CASC3	100	95.590	ENSPPRG00000023670	CASC3	100	95.590	Panthera_pardus
ENSBTAG00000006250	CASC3	91	94.819	ENSPTIG00000010891	CASC3	91	94.819	Panthera_tigris_altaica
ENSBTAG00000006250	CASC3	100	93.750	ENSPANG00000021708	CASC3	100	93.750	Papio_anubis
ENSBTAG00000006250	CASC3	99	46.910	ENSPKIG00000023186	casc3	98	46.523	Paramormyrops_kingsleyae
ENSBTAG00000006250	CASC3	100	91.892	ENSPEMG00000009774	Casc3	100	92.034	Peromyscus_maniculatus_bairdii
ENSBTAG00000006250	CASC3	100	81.986	ENSPCIG00000025678	CASC3	100	83.688	Phascolarctos_cinereus
ENSBTAG00000006250	CASC3	90	49.769	ENSPFOG00000017632	casc3	100	47.383	Poecilia_formosa
ENSBTAG00000006250	CASC3	68	46.559	ENSPMEG00000010299	casc3	79	46.988	Poecilia_mexicana
ENSBTAG00000006250	CASC3	63	67.857	ENSPREG00000011856	casc3	82	51.526	Poecilia_reticulata
ENSBTAG00000006250	CASC3	100	92.603	ENSPPYG00000008467	CASC3	100	93.457	Pongo_abelii
ENSBTAG00000006250	CASC3	100	90.625	ENSPCOG00000008183	CASC3	100	91.761	Propithecus_coquereli
ENSBTAG00000006250	CASC3	100	95.164	ENSPVAG00000008556	CASC3	100	95.164	Pteropus_vampyrus
ENSBTAG00000006250	CASC3	64	68.182	ENSPNYG00000011962	casc3	81	54.574	Pundamilia_nyererei
ENSBTAG00000006250	CASC3	91	93.709	ENSRNOG00000009716	Casc3	100	94.040	Rattus_norvegicus
ENSBTAG00000006250	CASC3	100	94.176	ENSRBIG00000033289	CASC3	100	93.581	Rhinopithecus_bieti
ENSBTAG00000006250	CASC3	100	94.176	ENSRROG00000022337	CASC3	100	94.176	Rhinopithecus_roxellana
ENSBTAG00000006250	CASC3	88	90.939	ENSSBOG00000031406	CASC3	98	92.233	Saimiri_boliviensis_boliviensis
ENSBTAG00000006250	CASC3	89	85.191	ENSSHAG00000013338	CASC3	100	84.444	Sarcophilus_harrisii
ENSBTAG00000006250	CASC3	82	61.514	ENSSFOG00015002645	casc3	92	49.231	Scleropages_formosus
ENSBTAG00000006250	CASC3	75	67.361	ENSSMAG00000016096	casc3	76	52.978	Scophthalmus_maximus
ENSBTAG00000006250	CASC3	84	49.387	ENSSDUG00000016893	casc3	75	50.774	Seriola_dumerili
ENSBTAG00000006250	CASC3	60	77.586	ENSSLDG00000020308	casc3	69	72.093	Seriola_lalandi_dorsalis
ENSBTAG00000006250	CASC3	85	82.155	ENSSARG00000010378	CASC3	99	82.363	Sorex_araneus
ENSBTAG00000006250	CASC3	89	95.527	ENSSSCG00000017477	CASC3	98	95.506	Sus_scrofa
ENSBTAG00000006250	CASC3	75	74.905	ENSTGUG00000002300	CASC3	99	74.905	Taeniopygia_guttata
ENSBTAG00000006250	CASC3	66	98.585	ENSTBEG00000017459	CASC3	67	98.585	Tupaia_belangeri
ENSBTAG00000006250	CASC3	86	86.921	ENSTTRG00000016896	CASC3	100	86.921	Tursiops_truncatus
ENSBTAG00000006250	CASC3	100	94.744	ENSUAMG00000015116	CASC3	100	96.393	Ursus_americanus
ENSBTAG00000006250	CASC3	89	94.569	ENSUMAG00000017697	CASC3	100	96.907	Ursus_maritimus
ENSBTAG00000006250	CASC3	75	100.000	ENSVPAG00000000799	CASC3	75	100.000	Vicugna_pacos
ENSBTAG00000006250	CASC3	100	96.302	ENSVVUG00000000997	CASC3	100	96.302	Vulpes_vulpes
ENSBTAG00000006250	CASC3	89	61.321	ENSXETG00000024395	casc3	98	58.996	Xenopus_tropicalis
ENSBTAG00000006250	CASC3	70	60.847	ENSXMAG00000013937	casc3	78	53.016	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISS	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0010494	cytoplasmic stress granule	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0030425	dendrite	-	IEA	Component
GO:0048471	perinuclear region of cytoplasm	-	IEA	Component
GO:0051028	mRNA transport	-	IEA	Process
GO:0071006	U2-type catalytic step 1 spliceosome	-	ISS	Component