EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000006481 (Gene tree)
Gene ID: 536316
Gene Symbol: POLR1A
Alias: -
Full Name: Bos taurus RNA polymerase I subunit A (POLR1A)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 84228 bases
Position: chr11:48759421-48843648
Accession: NM_001192876
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000008496	RNA_pol_Rpb1_5	PF04998.17	7.2e-103	1	1
ENSBTAP00000008496	RNA_pol_Rpb1_4	PF05000.17	2e-25	1	1
ENSBTAP00000008496	RNA_pol_Rpb1_2	PF00623.20	4e-70	1	1
ENSBTAP00000008496	RNA_pol_Rpb1_3	PF04983.18	1.1e-35	1	1
ENSBTAP00000008496	RNA_pol_Rpb1_1	PF04997.12	4.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000008496	-	6053	-	ENSBTAP00000008496	1717 (aa)	-	E1BIX2

Gene Model

Click here to download ENSBTAG00000006481's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000006481's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000006481	POLR1A	72	31.781	ENSBTAG00000013259	POLR3A	74	31.749
ENSBTAG00000006481	POLR1A	83	30.769	ENSBTAG00000046765	POLR2A	68	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000006481	POLR1A	100	90.180	ENSG00000068654	POLR1A	100	90.180	Homo_sapiens
ENSBTAG00000006481	POLR1A	69	67.761	ENSAPOG00000017945	polr1a	99	67.845	Acanthochromis_polyacanthus
ENSBTAG00000006481	POLR1A	100	91.497	ENSAMEG00000005807	POLR1A	100	92.316	Ailuropoda_melanoleuca
ENSBTAG00000006481	POLR1A	100	63.088	ENSACIG00000022147	polr1a	100	62.139	Amphilophus_citrinellus
ENSBTAG00000006481	POLR1A	100	66.338	ENSAOCG00000017336	polr1a	100	68.070	Amphiprion_ocellaris
ENSBTAG00000006481	POLR1A	94	72.535	ENSAPEG00000016105	polr1a	98	72.535	Amphiprion_percula
ENSBTAG00000006481	POLR1A	100	66.512	ENSATEG00000016773	polr1a	100	66.300	Anabas_testudineus
ENSBTAG00000006481	POLR1A	86	72.887	ENSAPLG00000013871	POLR1A	99	72.598	Anas_platyrhynchos
ENSBTAG00000006481	POLR1A	99	68.964	ENSACAG00000012141	POLR1A	99	68.848	Anolis_carolinensis
ENSBTAG00000006481	POLR1A	100	88.960	ENSANAG00000033927	POLR1A	100	88.488	Aotus_nancymaae
ENSBTAG00000006481	POLR1A	100	62.783	ENSACLG00000020541	polr1a	100	62.667	Astatotilapia_calliptera
ENSBTAG00000006481	POLR1A	99	38.715	WBGene00012999	rpoa-1	98	38.328	Caenorhabditis_elegans
ENSBTAG00000006481	POLR1A	100	88.727	ENSCJAG00000019547	POLR1A	100	88.727	Callithrix_jacchus
ENSBTAG00000006481	POLR1A	100	91.094	ENSCAFG00000007613	POLR1A	100	91.094	Canis_familiaris
ENSBTAG00000006481	POLR1A	100	90.888	ENSCAFG00020014752	POLR1A	100	90.888	Canis_lupus_dingo
ENSBTAG00000006481	POLR1A	100	94.777	ENSCHIG00000018204	POLR1A	99	96.956	Capra_hircus
ENSBTAG00000006481	POLR1A	100	87.202	ENSTSYG00000002761	POLR1A	100	87.194	Carlito_syrichta
ENSBTAG00000006481	POLR1A	97	83.761	ENSCAPG00000010132	POLR1A	100	83.572	Cavia_aperea
ENSBTAG00000006481	POLR1A	100	88.334	ENSCPOG00000012350	POLR1A	100	88.153	Cavia_porcellus
ENSBTAG00000006481	POLR1A	100	89.076	ENSCCAG00000019839	POLR1A	100	89.076	Cebus_capucinus
ENSBTAG00000006481	POLR1A	100	90.413	ENSCATG00000029786	POLR1A	100	90.413	Cercocebus_atys
ENSBTAG00000006481	POLR1A	100	88.406	ENSCLAG00000005187	POLR1A	100	88.406	Chinchilla_lanigera
ENSBTAG00000006481	POLR1A	100	90.354	ENSCSAG00000016251	POLR1A	100	90.354	Chlorocebus_sabaeus
ENSBTAG00000006481	POLR1A	99	74.350	ENSCPBG00000001115	POLR1A	99	74.623	Chrysemys_picta_bellii
ENSBTAG00000006481	POLR1A	91	55.707	ENSCSAVG00000007184	-	91	55.707	Ciona_savignyi
ENSBTAG00000006481	POLR1A	100	87.340	ENSCANG00000031785	POLR1A	100	87.340	Colobus_angolensis_palliatus
ENSBTAG00000006481	POLR1A	96	88.871	ENSCGRG00001006651	Polr1a	100	88.871	Cricetulus_griseus_chok1gshd
ENSBTAG00000006481	POLR1A	60	86.822	ENSCGRG00000010834	Polr1a	100	87.100	Cricetulus_griseus_crigri
ENSBTAG00000006481	POLR1A	100	61.708	ENSCSEG00000020190	polr1a	100	61.356	Cynoglossus_semilaevis
ENSBTAG00000006481	POLR1A	100	63.993	ENSCVAG00000020941	polr1a	100	64.290	Cyprinodon_variegatus
ENSBTAG00000006481	POLR1A	100	67.053	ENSDARG00000098375	polr1a	100	66.995	Danio_rerio
ENSBTAG00000006481	POLR1A	100	82.520	ENSDNOG00000010829	POLR1A	100	82.520	Dasypus_novemcinctus
ENSBTAG00000006481	POLR1A	100	87.623	ENSDORG00000008298	Polr1a	100	87.666	Dipodomys_ordii
ENSBTAG00000006481	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSBTAG00000006481	POLR1A	81	66.667	ENSEBUG00000005667	-	99	66.667	Eptatretus_burgeri
ENSBTAG00000006481	POLR1A	100	92.326	ENSEASG00005001625	POLR1A	100	92.326	Equus_asinus_asinus
ENSBTAG00000006481	POLR1A	100	92.209	ENSECAG00000030510	-	100	93.971	Equus_caballus
ENSBTAG00000006481	POLR1A	100	92.209	ENSECAG00000036306	-	100	93.971	Equus_caballus
ENSBTAG00000006481	POLR1A	100	92.209	ENSECAG00000010092	POLR1A	100	93.971	Equus_caballus
ENSBTAG00000006481	POLR1A	85	95.745	ENSEEUG00000000676	POLR1A	85	95.556	Erinaceus_europaeus
ENSBTAG00000006481	POLR1A	100	67.343	ENSELUG00000012769	polr1a	99	67.401	Esox_lucius
ENSBTAG00000006481	POLR1A	100	91.512	ENSFCAG00000008966	POLR1A	100	91.444	Felis_catus
ENSBTAG00000006481	POLR1A	99	71.412	ENSFALG00000010082	POLR1A	99	71.236	Ficedula_albicollis
ENSBTAG00000006481	POLR1A	100	87.856	ENSFDAG00000013726	POLR1A	100	87.101	Fukomys_damarensis
ENSBTAG00000006481	POLR1A	100	61.999	ENSFHEG00000005996	polr1a	100	61.739	Fundulus_heteroclitus
ENSBTAG00000006481	POLR1A	100	60.419	ENSGMOG00000002230	polr1a	100	60.768	Gadus_morhua
ENSBTAG00000006481	POLR1A	90	70.298	ENSGALG00000038160	-	99	70.428	Gallus_gallus
ENSBTAG00000006481	POLR1A	100	64.248	ENSGAFG00000015266	polr1a	100	63.919	Gambusia_affinis
ENSBTAG00000006481	POLR1A	100	64.845	ENSGACG00000018791	polr1a	100	64.696	Gasterosteus_aculeatus
ENSBTAG00000006481	POLR1A	90	75.097	ENSGAGG00000004984	-	95	81.934	Gopherus_agassizii
ENSBTAG00000006481	POLR1A	100	90.122	ENSGGOG00000001788	POLR1A	100	90.122	Gorilla_gorilla
ENSBTAG00000006481	POLR1A	90	64.865	ENSHBUG00000020021	polr1a	98	65.148	Haplochromis_burtoni
ENSBTAG00000006481	POLR1A	100	88.482	ENSHGLG00000006334	POLR1A	100	88.482	Heterocephalus_glaber_female
ENSBTAG00000006481	POLR1A	100	88.225	ENSHGLG00100006614	POLR1A	100	88.225	Heterocephalus_glaber_male
ENSBTAG00000006481	POLR1A	100	62.680	ENSHCOG00000003345	polr1a	100	62.912	Hippocampus_comes
ENSBTAG00000006481	POLR1A	100	66.183	ENSIPUG00000013174	polr1a	100	65.933	Ictalurus_punctatus
ENSBTAG00000006481	POLR1A	100	86.969	ENSSTOG00000012580	POLR1A	100	86.911	Ictidomys_tridecemlineatus
ENSBTAG00000006481	POLR1A	100	87.456	ENSJJAG00000013113	Polr1a	100	87.456	Jaculus_jaculus
ENSBTAG00000006481	POLR1A	100	65.719	ENSKMAG00000007399	polr1a	100	65.313	Kryptolebias_marmoratus
ENSBTAG00000006481	POLR1A	95	68.912	ENSLBEG00000015401	polr1a	99	69.026	Labrus_bergylta
ENSBTAG00000006481	POLR1A	53	76.739	ENSLACG00000003218	polr1a	100	76.739	Latimeria_chalumnae
ENSBTAG00000006481	POLR1A	100	70.966	ENSLOCG00000010881	polr1a	100	71.091	Lepisosteus_oculatus
ENSBTAG00000006481	POLR1A	100	89.224	ENSLAFG00000014948	POLR1A	100	89.340	Loxodonta_africana
ENSBTAG00000006481	POLR1A	100	90.413	ENSMFAG00000046097	POLR1A	100	90.413	Macaca_fascicularis
ENSBTAG00000006481	POLR1A	100	90.413	ENSMMUG00000015815	POLR1A	100	90.413	Macaca_mulatta
ENSBTAG00000006481	POLR1A	100	90.413	ENSMNEG00000043313	POLR1A	100	90.413	Macaca_nemestrina
ENSBTAG00000006481	POLR1A	100	89.773	ENSMLEG00000042428	POLR1A	100	89.773	Mandrillus_leucophaeus
ENSBTAG00000006481	POLR1A	100	66.841	ENSMAMG00000016565	polr1a	100	66.145	Mastacembelus_armatus
ENSBTAG00000006481	POLR1A	100	66.029	ENSMZEG00005004915	polr1a	100	66.029	Maylandia_zebra
ENSBTAG00000006481	POLR1A	99	69.155	ENSMGAG00000013111	POLR1A	99	69.271	Meleagris_gallopavo
ENSBTAG00000006481	POLR1A	92	87.231	ENSMAUG00000008497	Polr1a	100	87.540	Mesocricetus_auratus
ENSBTAG00000006481	POLR1A	100	90.413	ENSMICG00000000757	POLR1A	100	90.122	Microcebus_murinus
ENSBTAG00000006481	POLR1A	100	87.703	ENSMOCG00000000122	Polr1a	100	87.420	Microtus_ochrogaster
ENSBTAG00000006481	POLR1A	100	64.959	ENSMMOG00000010216	polr1a	100	65.308	Mola_mola
ENSBTAG00000006481	POLR1A	100	75.302	ENSMODG00000009335	POLR1A	100	75.000	Monodelphis_domestica
ENSBTAG00000006481	POLR1A	100	65.429	ENSMALG00000013363	polr1a	100	65.225	Monopterus_albus
ENSBTAG00000006481	POLR1A	100	86.485	MGP_CAROLIEiJ_G0028494	Polr1a	100	86.485	Mus_caroli
ENSBTAG00000006481	POLR1A	100	86.427	ENSMUSG00000049553	Polr1a	100	86.493	Mus_musculus
ENSBTAG00000006481	POLR1A	100	87.007	MGP_PahariEiJ_G0022230	Polr1a	100	87.007	Mus_pahari
ENSBTAG00000006481	POLR1A	100	84.448	MGP_SPRETEiJ_G0029499	Polr1a	100	85.314	Mus_spretus
ENSBTAG00000006481	POLR1A	100	90.983	ENSMPUG00000009135	POLR1A	100	90.983	Mustela_putorius_furo
ENSBTAG00000006481	POLR1A	100	88.780	ENSMLUG00000015723	POLR1A	100	88.722	Myotis_lucifugus
ENSBTAG00000006481	POLR1A	100	87.659	ENSNGAG00000017907	Polr1a	100	87.652	Nannospalax_galili
ENSBTAG00000006481	POLR1A	100	65.990	ENSNBRG00000000519	polr1a	100	66.145	Neolamprologus_brichardi
ENSBTAG00000006481	POLR1A	100	88.201	ENSNLEG00000002264	POLR1A	100	88.201	Nomascus_leucogenys
ENSBTAG00000006481	POLR1A	75	92.913	ENSMEUG00000011665	-	75	92.913	Notamacropus_eugenii
ENSBTAG00000006481	POLR1A	99	82.488	ENSOPRG00000008269	POLR1A	100	82.370	Ochotona_princeps
ENSBTAG00000006481	POLR1A	100	88.663	ENSODEG00000003542	POLR1A	100	88.488	Octodon_degus
ENSBTAG00000006481	POLR1A	100	66.241	ENSONIG00000015895	polr1a	100	66.241	Oreochromis_niloticus
ENSBTAG00000006481	POLR1A	100	89.523	ENSOCUG00000010138	POLR1A	100	89.523	Oryctolagus_cuniculus
ENSBTAG00000006481	POLR1A	100	65.313	ENSORLG00000008753	polr1a	99	65.197	Oryzias_latipes
ENSBTAG00000006481	POLR1A	100	64.174	ENSORLG00020020726	polr1a	99	64.000	Oryzias_latipes_hni
ENSBTAG00000006481	POLR1A	95	73.404	ENSORLG00015016071	polr1a	98	73.333	Oryzias_latipes_hsok
ENSBTAG00000006481	POLR1A	100	89.186	ENSOGAG00000004031	POLR1A	100	89.186	Otolemur_garnettii
ENSBTAG00000006481	POLR1A	100	97.096	ENSOARG00000020601	POLR1A	100	97.096	Ovis_aries
ENSBTAG00000006481	POLR1A	100	89.948	ENSPPAG00000042450	POLR1A	100	89.948	Pan_paniscus
ENSBTAG00000006481	POLR1A	100	91.744	ENSPPRG00000006702	POLR1A	100	91.735	Panthera_pardus
ENSBTAG00000006481	POLR1A	100	91.194	ENSPTIG00000018783	POLR1A	100	91.183	Panthera_tigris_altaica
ENSBTAG00000006481	POLR1A	100	89.890	ENSPTRG00000012147	POLR1A	100	89.890	Pan_troglodytes
ENSBTAG00000006481	POLR1A	100	90.296	ENSPANG00000025908	POLR1A	100	90.296	Papio_anubis
ENSBTAG00000006481	POLR1A	94	74.306	ENSPKIG00000005468	polr1a	99	74.306	Paramormyrops_kingsleyae
ENSBTAG00000006481	POLR1A	63	70.716	ENSPSIG00000009321	-	99	71.717	Pelodiscus_sinensis
ENSBTAG00000006481	POLR1A	54	68.235	ENSPMGG00000009718	polr1a	95	68.235	Periophthalmus_magnuspinnatus
ENSBTAG00000006481	POLR1A	100	88.167	ENSPEMG00000022224	Polr1a	100	88.348	Peromyscus_maniculatus_bairdii
ENSBTAG00000006481	POLR1A	95	78.758	ENSPCIG00000004222	POLR1A	99	78.698	Phascolarctos_cinereus
ENSBTAG00000006481	POLR1A	100	64.542	ENSPFOG00000005025	polr1a	100	64.145	Poecilia_formosa
ENSBTAG00000006481	POLR1A	100	64.730	ENSPLAG00000021389	polr1a	100	64.389	Poecilia_latipinna
ENSBTAG00000006481	POLR1A	100	63.088	ENSPMEG00000006463	polr1a	100	63.225	Poecilia_mexicana
ENSBTAG00000006481	POLR1A	100	64.771	ENSPREG00000002389	polr1a	100	64.679	Poecilia_reticulata
ENSBTAG00000006481	POLR1A	100	89.715	ENSPPYG00000012217	POLR1A	100	89.715	Pongo_abelii
ENSBTAG00000006481	POLR1A	92	100.000	ENSPCAG00000011582	POLR1A	92	100.000	Procavia_capensis
ENSBTAG00000006481	POLR1A	100	90.413	ENSPCOG00000026987	POLR1A	100	90.180	Propithecus_coquereli
ENSBTAG00000006481	POLR1A	95	90.441	ENSPVAG00000012674	POLR1A	95	89.753	Pteropus_vampyrus
ENSBTAG00000006481	POLR1A	100	66.048	ENSPNYG00000000026	polr1a	100	66.048	Pundamilia_nyererei
ENSBTAG00000006481	POLR1A	100	66.493	ENSPNAG00000019223	polr1a	99	68.381	Pygocentrus_nattereri
ENSBTAG00000006481	POLR1A	100	87.594	ENSRNOG00000009545	Polr1a	100	87.819	Rattus_norvegicus
ENSBTAG00000006481	POLR1A	100	89.657	ENSRBIG00000028335	POLR1A	100	89.657	Rhinopithecus_bieti
ENSBTAG00000006481	POLR1A	100	89.599	ENSRROG00000031473	POLR1A	100	89.599	Rhinopithecus_roxellana
ENSBTAG00000006481	POLR1A	99	36.661	YOR341W	RPA190	99	36.548	Saccharomyces_cerevisiae
ENSBTAG00000006481	POLR1A	100	88.786	ENSSBOG00000030262	POLR1A	100	88.786	Saimiri_boliviensis_boliviensis
ENSBTAG00000006481	POLR1A	100	73.961	ENSSHAG00000014739	POLR1A	100	73.961	Sarcophilus_harrisii
ENSBTAG00000006481	POLR1A	100	67.517	ENSSFOG00015019716	polr1a	100	67.633	Scleropages_formosus
ENSBTAG00000006481	POLR1A	100	66.244	ENSSMAG00000014342	polr1a	100	66.357	Scophthalmus_maximus
ENSBTAG00000006481	POLR1A	100	67.553	ENSSDUG00000014631	polr1a	100	67.380	Seriola_dumerili
ENSBTAG00000006481	POLR1A	100	65.471	ENSSLDG00000024095	polr1a	100	64.922	Seriola_lalandi_dorsalis
ENSBTAG00000006481	POLR1A	75	96.809	ENSSARG00000003136	-	76	96.809	Sorex_araneus
ENSBTAG00000006481	POLR1A	100	70.732	ENSSPUG00000004215	POLR1A	98	78.462	Sphenodon_punctatus
ENSBTAG00000006481	POLR1A	66	72.449	ENSSPAG00000016341	polr1a	96	72.449	Stegastes_partitus
ENSBTAG00000006481	POLR1A	83	93.132	ENSSSCG00000008226	POLR1A	99	93.113	Sus_scrofa
ENSBTAG00000006481	POLR1A	99	70.477	ENSTGUG00000010704	POLR1A	100	69.784	Taeniopygia_guttata
ENSBTAG00000006481	POLR1A	100	63.820	ENSTRUG00000002210	polr1a	99	63.521	Takifugu_rubripes
ENSBTAG00000006481	POLR1A	100	60.265	ENSTNIG00000010116	polr1a	100	60.092	Tetraodon_nigroviridis
ENSBTAG00000006481	POLR1A	74	95.575	ENSTBEG00000008646	POLR1A	74	95.575	Tupaia_belangeri
ENSBTAG00000006481	POLR1A	100	88.663	ENSTTRG00000008597	POLR1A	100	88.759	Tursiops_truncatus
ENSBTAG00000006481	POLR1A	69	91.871	ENSUAMG00000012158	-	94	91.617	Ursus_americanus
ENSBTAG00000006481	POLR1A	100	90.978	ENSUMAG00000006700	POLR1A	100	90.803	Ursus_maritimus
ENSBTAG00000006481	POLR1A	100	90.745	ENSVVUG00000001245	POLR1A	100	90.745	Vulpes_vulpes
ENSBTAG00000006481	POLR1A	100	67.684	ENSXETG00000001952	polr1a	100	69.489	Xenopus_tropicalis
ENSBTAG00000006481	POLR1A	100	64.968	ENSXMAG00000004032	polr1a	100	64.971	Xiphophorus_maculatus