EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000006493 (Gene tree)
Gene ID: 506507
Gene Symbol: CLP1
Alias: -
Full Name: Bos taurus cleavage and polyadenylation factor I subunit 1 (CLP1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 3105 bases
Position: chr15:80900685-80903789
Accession: NM_001081713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000008507	Clp1	PF06807.14	2e-30	1	1
ENSBTAP00000062480	Clp1	PF06807.14	2e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000008507	-	1749	XM_005216531	ENSBTAP00000008507	425 (aa)	XP_005216587	A2VE01
ENSBTAT00000086281	-	1780	-	ENSBTAP00000062480	425 (aa)	XP_005216587	UPI00004BCCCE

Gene Model

Click here to download ENSBTAG00000006493's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000006493's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000006493	CLP1	100	99.529	ENSG00000172409	CLP1	100	99.529	Homo_sapiens
ENSBTAG00000006493	CLP1	98	76.651	ENSAPOG00000008242	clp1	96	76.651	Acanthochromis_polyacanthus
ENSBTAG00000006493	CLP1	100	100.000	ENSAMEG00000014551	CLP1	98	100.000	Ailuropoda_melanoleuca
ENSBTAG00000006493	CLP1	98	75.943	ENSACIG00000006310	clp1	95	75.943	Amphilophus_citrinellus
ENSBTAG00000006493	CLP1	100	75.289	ENSAOCG00000010681	clp1	100	75.289	Amphiprion_ocellaris
ENSBTAG00000006493	CLP1	98	76.651	ENSAPEG00000012165	clp1	99	76.651	Amphiprion_percula
ENSBTAG00000006493	CLP1	99	76.102	ENSATEG00000012374	clp1	98	76.102	Anabas_testudineus
ENSBTAG00000006493	CLP1	100	93.882	ENSACAG00000007139	CLP1	100	93.882	Anolis_carolinensis
ENSBTAG00000006493	CLP1	100	99.529	ENSANAG00000034935	CLP1	100	99.529	Aotus_nancymaae
ENSBTAG00000006493	CLP1	99	75.174	ENSACLG00000013573	clp1	98	75.174	Astatotilapia_calliptera
ENSBTAG00000006493	CLP1	97	78.860	ENSAMXG00000014194	clp1	98	78.860	Astyanax_mexicanus
ENSBTAG00000006493	CLP1	96	47.962	WBGene00010304	clpf-1	97	47.962	Caenorhabditis_elegans
ENSBTAG00000006493	CLP1	100	99.529	ENSCJAG00000008748	CLP1	100	99.529	Callithrix_jacchus
ENSBTAG00000006493	CLP1	100	100.000	ENSCAFG00000007815	CLP1	100	100.000	Canis_familiaris
ENSBTAG00000006493	CLP1	100	100.000	ENSCAFG00020000903	CLP1	100	100.000	Canis_lupus_dingo
ENSBTAG00000006493	CLP1	100	99.294	ENSCHIG00000023497	CLP1	100	99.294	Capra_hircus
ENSBTAG00000006493	CLP1	100	99.529	ENSTSYG00000006824	CLP1	99	99.529	Carlito_syrichta
ENSBTAG00000006493	CLP1	100	99.294	ENSCAPG00000009703	CLP1	100	99.294	Cavia_aperea
ENSBTAG00000006493	CLP1	98	99.519	ENSCPOG00000012554	CLP1	99	99.519	Cavia_porcellus
ENSBTAG00000006493	CLP1	100	99.059	ENSCCAG00000031957	CLP1	100	99.059	Cebus_capucinus
ENSBTAG00000006493	CLP1	100	99.529	ENSCATG00000044628	CLP1	100	99.529	Cercocebus_atys
ENSBTAG00000006493	CLP1	100	99.765	ENSCLAG00000004094	CLP1	100	99.765	Chinchilla_lanigera
ENSBTAG00000006493	CLP1	100	99.529	ENSCSAG00000005994	CLP1	100	99.529	Chlorocebus_sabaeus
ENSBTAG00000006493	CLP1	100	94.353	ENSCPBG00000016843	CLP1	100	94.353	Chrysemys_picta_bellii
ENSBTAG00000006493	CLP1	99	63.270	ENSCING00000003779	-	98	63.270	Ciona_intestinalis
ENSBTAG00000006493	CLP1	99	63.033	ENSCSAVG00000003437	-	99	63.033	Ciona_savignyi
ENSBTAG00000006493	CLP1	100	99.529	ENSCANG00000034335	CLP1	100	99.529	Colobus_angolensis_palliatus
ENSBTAG00000006493	CLP1	100	99.294	ENSCGRG00001002227	CLP1	100	99.294	Cricetulus_griseus_chok1gshd
ENSBTAG00000006493	CLP1	100	99.294	ENSCGRG00000004328	CLP1	100	99.294	Cricetulus_griseus_crigri
ENSBTAG00000006493	CLP1	99	74.478	ENSCSEG00000008614	clp1	98	74.478	Cynoglossus_semilaevis
ENSBTAG00000006493	CLP1	99	75.638	ENSCVAG00000020101	clp1	98	75.638	Cyprinodon_variegatus
ENSBTAG00000006493	CLP1	97	79.714	ENSDARG00000063663	clp1	95	79.714	Danio_rerio
ENSBTAG00000006493	CLP1	99	99.528	ENSDNOG00000042415	CLP1	90	99.528	Dasypus_novemcinctus
ENSBTAG00000006493	CLP1	100	99.529	ENSDORG00000014685	Clp1	100	99.529	Dipodomys_ordii
ENSBTAG00000006493	CLP1	96	56.796	FBgn0033842	cbc	97	56.796	Drosophila_melanogaster
ENSBTAG00000006493	CLP1	100	99.765	ENSETEG00000003009	CLP1	100	99.765	Echinops_telfairi
ENSBTAG00000006493	CLP1	97	72.397	ENSEBUG00000011648	clp1	97	72.397	Eptatretus_burgeri
ENSBTAG00000006493	CLP1	100	99.294	ENSEASG00005002093	CLP1	100	99.294	Equus_asinus_asinus
ENSBTAG00000006493	CLP1	100	99.294	ENSECAG00000011597	CLP1	100	99.294	Equus_caballus
ENSBTAG00000006493	CLP1	100	98.588	ENSEEUG00000012771	CLP1	100	98.588	Erinaceus_europaeus
ENSBTAG00000006493	CLP1	97	79.335	ENSELUG00000024048	clp1	95	79.335	Esox_lucius
ENSBTAG00000006493	CLP1	100	99.765	ENSFCAG00000006633	CLP1	100	99.765	Felis_catus
ENSBTAG00000006493	CLP1	100	92.235	ENSFALG00000011145	CLP1	100	92.235	Ficedula_albicollis
ENSBTAG00000006493	CLP1	100	99.765	ENSFDAG00000000234	CLP1	100	99.765	Fukomys_damarensis
ENSBTAG00000006493	CLP1	99	74.942	ENSFHEG00000014760	CLP1	98	74.942	Fundulus_heteroclitus
ENSBTAG00000006493	CLP1	97	79.665	ENSGMOG00000019340	clp1	95	79.665	Gadus_morhua
ENSBTAG00000006493	CLP1	100	92.941	ENSGALG00000007370	CLP1	100	92.941	Gallus_gallus
ENSBTAG00000006493	CLP1	99	75.406	ENSGAFG00000003020	clp1	99	75.406	Gambusia_affinis
ENSBTAG00000006493	CLP1	99	76.566	ENSGACG00000017832	clp1	98	76.566	Gasterosteus_aculeatus
ENSBTAG00000006493	CLP1	100	94.118	ENSGAGG00000013279	CLP1	100	94.118	Gopherus_agassizii
ENSBTAG00000006493	CLP1	100	99.529	ENSGGOG00000023006	CLP1	100	99.529	Gorilla_gorilla
ENSBTAG00000006493	CLP1	99	75.174	ENSHBUG00000010436	clp1	98	75.174	Haplochromis_burtoni
ENSBTAG00000006493	CLP1	100	99.765	ENSHGLG00000009914	CLP1	100	99.765	Heterocephalus_glaber_female
ENSBTAG00000006493	CLP1	100	99.765	ENSHGLG00100006105	CLP1	100	99.765	Heterocephalus_glaber_male
ENSBTAG00000006493	CLP1	99	76.552	ENSHCOG00000010072	clp1	99	76.552	Hippocampus_comes
ENSBTAG00000006493	CLP1	97	79.524	ENSIPUG00000016238	clp1	94	79.335	Ictalurus_punctatus
ENSBTAG00000006493	CLP1	100	99.765	ENSSTOG00000029257	CLP1	100	99.765	Ictidomys_tridecemlineatus
ENSBTAG00000006493	CLP1	100	99.294	ENSJJAG00000023691	Clp1	100	99.294	Jaculus_jaculus
ENSBTAG00000006493	CLP1	99	74.942	ENSKMAG00000011990	clp1	98	74.942	Kryptolebias_marmoratus
ENSBTAG00000006493	CLP1	99	76.334	ENSLBEG00000010201	clp1	98	76.334	Labrus_bergylta
ENSBTAG00000006493	CLP1	100	85.412	ENSLACG00000003160	CLP1	100	85.412	Latimeria_chalumnae
ENSBTAG00000006493	CLP1	73	76.708	ENSLOCG00000008074	clp1	100	77.640	Lepisosteus_oculatus
ENSBTAG00000006493	CLP1	100	99.529	ENSLAFG00000014907	CLP1	100	99.529	Loxodonta_africana
ENSBTAG00000006493	CLP1	100	99.529	ENSMFAG00000046074	CLP1	100	99.529	Macaca_fascicularis
ENSBTAG00000006493	CLP1	100	99.529	ENSMMUG00000038007	CLP1	99	99.529	Macaca_mulatta
ENSBTAG00000006493	CLP1	100	99.529	ENSMNEG00000000259	CLP1	100	99.529	Macaca_nemestrina
ENSBTAG00000006493	CLP1	100	99.529	ENSMLEG00000043556	CLP1	100	99.529	Mandrillus_leucophaeus
ENSBTAG00000006493	CLP1	100	75.520	ENSMAMG00000002149	clp1	98	75.520	Mastacembelus_armatus
ENSBTAG00000006493	CLP1	99	75.174	ENSMZEG00005002850	clp1	98	75.174	Maylandia_zebra
ENSBTAG00000006493	CLP1	100	92.941	ENSMGAG00000009643	CLP1	100	92.941	Meleagris_gallopavo
ENSBTAG00000006493	CLP1	100	98.588	ENSMAUG00000016261	Clp1	100	98.588	Mesocricetus_auratus
ENSBTAG00000006493	CLP1	100	100.000	ENSMICG00000004895	CLP1	100	100.000	Microcebus_murinus
ENSBTAG00000006493	CLP1	100	99.529	ENSMOCG00000005498	Clp1	100	99.529	Microtus_ochrogaster
ENSBTAG00000006493	CLP1	98	78.066	ENSMMOG00000003229	clp1	96	78.066	Mola_mola
ENSBTAG00000006493	CLP1	100	97.882	ENSMODG00000020107	-	100	97.882	Monodelphis_domestica
ENSBTAG00000006493	CLP1	100	97.882	ENSMODG00000024148	-	100	97.882	Monodelphis_domestica
ENSBTAG00000006493	CLP1	99	74.943	ENSMALG00000014239	clp1	99	74.943	Monopterus_albus
ENSBTAG00000006493	CLP1	100	99.059	MGP_CAROLIEiJ_G0023726	Clp1	100	99.059	Mus_caroli
ENSBTAG00000006493	CLP1	100	99.059	ENSMUSG00000027079	Clp1	100	99.059	Mus_musculus
ENSBTAG00000006493	CLP1	100	98.824	MGP_PahariEiJ_G0025177	Clp1	100	98.824	Mus_pahari
ENSBTAG00000006493	CLP1	100	99.059	MGP_SPRETEiJ_G0024646	Clp1	100	99.059	Mus_spretus
ENSBTAG00000006493	CLP1	100	100.000	ENSMPUG00000000268	CLP1	100	100.000	Mustela_putorius_furo
ENSBTAG00000006493	CLP1	100	99.059	ENSMLUG00000007904	CLP1	100	99.059	Myotis_lucifugus
ENSBTAG00000006493	CLP1	100	99.765	ENSNGAG00000006165	Clp1	100	99.765	Nannospalax_galili
ENSBTAG00000006493	CLP1	99	75.174	ENSNBRG00000005225	clp1	98	75.174	Neolamprologus_brichardi
ENSBTAG00000006493	CLP1	82	95.960	ENSNLEG00000012809	-	100	95.960	Nomascus_leucogenys
ENSBTAG00000006493	CLP1	100	97.882	ENSMEUG00000010949	CLP1	99	97.882	Notamacropus_eugenii
ENSBTAG00000006493	CLP1	70	99.329	ENSOPRG00000007329	CLP1	100	99.329	Ochotona_princeps
ENSBTAG00000006493	CLP1	100	99.765	ENSODEG00000011410	CLP1	100	99.765	Octodon_degus
ENSBTAG00000006493	CLP1	99	74.942	ENSONIG00000005089	clp1	98	74.942	Oreochromis_niloticus
ENSBTAG00000006493	CLP1	100	99.529	ENSOCUG00000007045	CLP1	100	99.529	Oryctolagus_cuniculus
ENSBTAG00000006493	CLP1	99	74.478	ENSORLG00000003647	clp1	98	74.478	Oryzias_latipes
ENSBTAG00000006493	CLP1	99	74.246	ENSORLG00020016676	clp1	98	74.246	Oryzias_latipes_hni
ENSBTAG00000006493	CLP1	99	74.478	ENSORLG00015019484	clp1	98	74.478	Oryzias_latipes_hsok
ENSBTAG00000006493	CLP1	99	74.942	ENSOMEG00000021303	clp1	98	74.942	Oryzias_melastigma
ENSBTAG00000006493	CLP1	100	99.765	ENSOGAG00000004508	CLP1	100	99.765	Otolemur_garnettii
ENSBTAG00000006493	CLP1	100	98.353	ENSOARG00000010145	CLP1	98	98.353	Ovis_aries
ENSBTAG00000006493	CLP1	100	99.529	ENSPPAG00000041519	CLP1	100	99.529	Pan_paniscus
ENSBTAG00000006493	CLP1	100	99.765	ENSPPRG00000006135	CLP1	100	99.765	Panthera_pardus
ENSBTAG00000006493	CLP1	100	99.765	ENSPTIG00000015866	CLP1	100	99.765	Panthera_tigris_altaica
ENSBTAG00000006493	CLP1	100	99.529	ENSPTRG00000047318	CLP1	100	99.529	Pan_troglodytes
ENSBTAG00000006493	CLP1	100	99.529	ENSPANG00000017078	CLP1	97	99.529	Papio_anubis
ENSBTAG00000006493	CLP1	97	80.387	ENSPKIG00000007697	clp1	94	80.387	Paramormyrops_kingsleyae
ENSBTAG00000006493	CLP1	95	91.791	ENSPSIG00000005468	CLP1	100	91.791	Pelodiscus_sinensis
ENSBTAG00000006493	CLP1	99	76.267	ENSPMGG00000012171	clp1	99	76.267	Periophthalmus_magnuspinnatus
ENSBTAG00000006493	CLP1	100	99.529	ENSPEMG00000011213	-	100	99.529	Peromyscus_maniculatus_bairdii
ENSBTAG00000006493	CLP1	100	76.056	ENSPMAG00000006707	clp1	100	76.056	Petromyzon_marinus
ENSBTAG00000006493	CLP1	100	97.412	ENSPCIG00000011899	CLP1	99	97.412	Phascolarctos_cinereus
ENSBTAG00000006493	CLP1	99	74.942	ENSPFOG00000008169	clp1	98	74.942	Poecilia_formosa
ENSBTAG00000006493	CLP1	99	74.942	ENSPLAG00000022388	clp1	99	74.942	Poecilia_latipinna
ENSBTAG00000006493	CLP1	99	74.942	ENSPMEG00000021088	clp1	99	74.942	Poecilia_mexicana
ENSBTAG00000006493	CLP1	99	75.174	ENSPREG00000017802	clp1	98	75.174	Poecilia_reticulata
ENSBTAG00000006493	CLP1	53	99.554	ENSPPYG00000003266	-	100	99.554	Pongo_abelii
ENSBTAG00000006493	CLP1	100	100.000	ENSPCOG00000000360	CLP1	98	100.000	Propithecus_coquereli
ENSBTAG00000006493	CLP1	100	100.000	ENSPVAG00000016270	CLP1	100	100.000	Pteropus_vampyrus
ENSBTAG00000006493	CLP1	99	75.174	ENSPNYG00000017274	clp1	97	75.174	Pundamilia_nyererei
ENSBTAG00000006493	CLP1	97	80.238	ENSPNAG00000026460	clp1	95	80.285	Pygocentrus_nattereri
ENSBTAG00000006493	CLP1	100	99.059	ENSRNOG00000007416	Clp1	100	99.059	Rattus_norvegicus
ENSBTAG00000006493	CLP1	100	99.529	ENSRBIG00000018191	CLP1	100	99.529	Rhinopithecus_bieti
ENSBTAG00000006493	CLP1	100	99.529	ENSRROG00000039265	CLP1	100	99.529	Rhinopithecus_roxellana
ENSBTAG00000006493	CLP1	96	79.310	ENSSBOG00000010558	-	93	79.310	Saimiri_boliviensis_boliviensis
ENSBTAG00000006493	CLP1	100	99.529	ENSSBOG00000032517	-	100	99.529	Saimiri_boliviensis_boliviensis
ENSBTAG00000006493	CLP1	100	98.118	ENSSHAG00000015695	CLP1	100	98.118	Sarcophilus_harrisii
ENSBTAG00000006493	CLP1	97	79.059	ENSSFOG00015000628	clp1	96	79.059	Scleropages_formosus
ENSBTAG00000006493	CLP1	99	75.174	ENSSMAG00000019423	clp1	97	75.174	Scophthalmus_maximus
ENSBTAG00000006493	CLP1	98	77.358	ENSSDUG00000014495	clp1	96	77.358	Seriola_dumerili
ENSBTAG00000006493	CLP1	98	77.123	ENSSLDG00000000937	clp1	96	77.123	Seriola_lalandi_dorsalis
ENSBTAG00000006493	CLP1	52	99.103	ENSSARG00000002459	CLP1	100	99.103	Sorex_araneus
ENSBTAG00000006493	CLP1	100	93.176	ENSSPUG00000016811	CLP1	100	93.176	Sphenodon_punctatus
ENSBTAG00000006493	CLP1	98	76.179	ENSSPAG00000016052	clp1	96	76.179	Stegastes_partitus
ENSBTAG00000006493	CLP1	100	100.000	ENSSSCG00000031442	CLP1	100	100.000	Sus_scrofa
ENSBTAG00000006493	CLP1	100	92.000	ENSTGUG00000007002	CLP1	100	92.000	Taeniopygia_guttata
ENSBTAG00000006493	CLP1	99	76.581	ENSTRUG00000012602	clp1	98	76.581	Takifugu_rubripes
ENSBTAG00000006493	CLP1	99	76.112	ENSTNIG00000013125	clp1	98	76.112	Tetraodon_nigroviridis
ENSBTAG00000006493	CLP1	100	98.824	ENSTBEG00000009975	CLP1	100	98.824	Tupaia_belangeri
ENSBTAG00000006493	CLP1	100	99.529	ENSTTRG00000002096	CLP1	100	99.529	Tursiops_truncatus
ENSBTAG00000006493	CLP1	100	100.000	ENSUAMG00000011388	CLP1	100	100.000	Ursus_americanus
ENSBTAG00000006493	CLP1	100	100.000	ENSUMAG00000018317	CLP1	100	100.000	Ursus_maritimus
ENSBTAG00000006493	CLP1	100	100.000	ENSVVUG00000017138	CLP1	97	100.000	Vulpes_vulpes
ENSBTAG00000006493	CLP1	98	77.698	ENSXETG00000007088	clp1	95	78.417	Xenopus_tropicalis
ENSBTAG00000006493	CLP1	99	75.174	ENSXCOG00000002287	clp1	98	75.174	Xiphophorus_couchianus
ENSBTAG00000006493	CLP1	99	75.174	ENSXMAG00000009783	clp1	98	75.174	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000214	tRNA-intron endonuclease complex	-	ISS	Component
GO:0005524	ATP binding	-	IEA	Function
GO:0005849	mRNA cleavage factor complex	-	IEA	Component
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISS	Process
GO:0016310	phosphorylation	-	IEA	Process
GO:0021695	cerebellar cortex development	-	ISS	Process
GO:0030423	targeting of mRNA for destruction involved in RNA interference	-	ISS	Process
GO:0035087	siRNA loading onto RISC involved in RNA interference	-	ISS	Process
GO:0046404	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	-	IEA	Function
GO:0051733	polydeoxyribonucleotide kinase activity	-	ISS	Function
GO:0051736	ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity	-	ISS	Function