EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000006543 (Gene tree)
Gene ID: 534882
Gene Symbol: EIF3CL
Alias: EIF3C|EIF3S8|eIF3-p110
Full Name: Bos taurus eukaryotic translation initiation factor 3%2C subunit C-like (EIF3CL)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 20173 bases
Position: chr25:26008727-26028899
Accession: NM_001034618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000023384	eIF-3c_N	PF05470.12	5e-273	1	1
ENSBTAP00000067483	eIF-3c_N	PF05470.12	1.2e-270	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000068159	-	2739	-	ENSBTAP00000067483	912 (aa)	-	-
ENSBTAT00000023384	-	2904	XM_005224928	ENSBTAP00000023384	912 (aa)	XP_005224985	Q3SYW6

Gene Model

Click here to download ENSBTAG00000006543's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000006543's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000006543	EIF3CL	100	97.921	ENSG00000205609	EIF3CL	100	97.921	Homo_sapiens
ENSBTAG00000006543	EIF3CL	100	98.028	ENSG00000184110	EIF3C	100	100.000	Homo_sapiens
ENSBTAG00000006543	EIF3CL	99	76.496	ENSAPOG00000024092	eif3c	98	80.451	Acanthochromis_polyacanthus
ENSBTAG00000006543	EIF3CL	100	98.467	ENSAMEG00000015454	-	100	98.467	Ailuropoda_melanoleuca
ENSBTAG00000006543	EIF3CL	99	73.348	ENSACIG00000015082	eif3c	93	83.887	Amphilophus_citrinellus
ENSBTAG00000006543	EIF3CL	94	84.158	ENSAOCG00000021466	eif3c	94	84.158	Amphiprion_ocellaris
ENSBTAG00000006543	EIF3CL	94	84.158	ENSAPEG00000010521	eif3c	94	84.158	Amphiprion_percula
ENSBTAG00000006543	EIF3CL	99	76.087	ENSATEG00000019001	eif3c	98	76.087	Anabas_testudineus
ENSBTAG00000006543	EIF3CL	100	86.245	ENSACAG00000005937	-	100	85.917	Anolis_carolinensis
ENSBTAG00000006543	EIF3CL	100	97.919	ENSANAG00000020640	-	100	97.919	Aotus_nancymaae
ENSBTAG00000006543	EIF3CL	84	83.471	ENSACLG00000009347	eif3c	90	83.471	Astatotilapia_calliptera
ENSBTAG00000006543	EIF3CL	84	80.619	ENSACLG00000009322	eif3c	92	80.619	Astatotilapia_calliptera
ENSBTAG00000006543	EIF3CL	99	77.033	ENSAMXG00000020949	eif3c	98	76.503	Astyanax_mexicanus
ENSBTAG00000006543	EIF3CL	95	42.536	WBGene00001226	eif-3.C	66	46.916	Caenorhabditis_elegans
ENSBTAG00000006543	EIF3CL	100	97.700	ENSCJAG00000006341	-	100	97.700	Callithrix_jacchus
ENSBTAG00000006543	EIF3CL	100	98.357	ENSCAFG00000017143	-	100	98.357	Canis_familiaris
ENSBTAG00000006543	EIF3CL	100	98.467	ENSCAFG00020017587	-	100	98.467	Canis_lupus_dingo
ENSBTAG00000006543	EIF3CL	100	99.452	ENSCHIG00000024795	-	100	99.452	Capra_hircus
ENSBTAG00000006543	EIF3CL	100	97.481	ENSTSYG00000003486	-	100	97.481	Carlito_syrichta
ENSBTAG00000006543	EIF3CL	96	88.562	ENSCAPG00000015887	-	100	87.316	Cavia_aperea
ENSBTAG00000006543	EIF3CL	100	98.028	ENSCPOG00000007533	-	100	98.028	Cavia_porcellus
ENSBTAG00000006543	EIF3CL	99	82.930	ENSCCAG00000029099	-	99	80.418	Cebus_capucinus
ENSBTAG00000006543	EIF3CL	100	92.552	ENSCCAG00000027724	-	100	90.800	Cebus_capucinus
ENSBTAG00000006543	EIF3CL	100	97.039	ENSCCAG00000034928	-	100	97.039	Cebus_capucinus
ENSBTAG00000006543	EIF3CL	100	97.919	ENSCATG00000032673	-	100	97.919	Cercocebus_atys
ENSBTAG00000006543	EIF3CL	100	97.481	ENSCLAG00000011094	-	100	97.481	Chinchilla_lanigera
ENSBTAG00000006543	EIF3CL	100	97.919	ENSCSAG00000006297	-	100	97.919	Chlorocebus_sabaeus
ENSBTAG00000006543	EIF3CL	55	83.012	ENSCHOG00000003120	-	88	83.012	Choloepus_hoffmanni
ENSBTAG00000006543	EIF3CL	72	92.038	ENSCPBG00000012407	-	95	78.327	Chrysemys_picta_bellii
ENSBTAG00000006543	EIF3CL	79	55.993	ENSCSAVG00000006744	-	90	57.391	Ciona_savignyi
ENSBTAG00000006543	EIF3CL	100	97.919	ENSCANG00000033626	-	100	97.919	Colobus_angolensis_palliatus
ENSBTAG00000006543	EIF3CL	100	97.262	ENSCGRG00001015265	EIF3C	100	97.262	Cricetulus_griseus_chok1gshd
ENSBTAG00000006543	EIF3CL	99	75.490	ENSCSEG00000017770	eif3c	100	74.236	Cynoglossus_semilaevis
ENSBTAG00000006543	EIF3CL	99	75.490	ENSCVAG00000005402	eif3c	98	75.708	Cyprinodon_variegatus
ENSBTAG00000006543	EIF3CL	99	76.362	ENSDARG00000016443	eif3c	98	75.708	Danio_rerio
ENSBTAG00000006543	EIF3CL	100	98.028	ENSDNOG00000031497	-	100	98.028	Dasypus_novemcinctus
ENSBTAG00000006543	EIF3CL	100	98.138	ENSDORG00000016471	Eif3c	100	98.138	Dipodomys_ordii
ENSBTAG00000006543	EIF3CL	98	51.054	FBgn0034258	eIF3c	63	57.627	Drosophila_melanogaster
ENSBTAG00000006543	EIF3CL	92	98.624	ENSETEG00000013527	-	92	98.624	Echinops_telfairi
ENSBTAG00000006543	EIF3CL	99	62.943	ENSEBUG00000001629	eif3c	99	62.931	Eptatretus_burgeri
ENSBTAG00000006543	EIF3CL	100	98.138	ENSECAG00000008746	-	100	98.138	Equus_caballus
ENSBTAG00000006543	EIF3CL	64	64.796	ENSEEUG00000000726	-	64	64.796	Erinaceus_europaeus
ENSBTAG00000006543	EIF3CL	87	97.368	ENSEEUG00000006148	-	100	97.368	Erinaceus_europaeus
ENSBTAG00000006543	EIF3CL	99	75.817	ENSELUG00000022257	eif3c	92	83.914	Esox_lucius
ENSBTAG00000006543	EIF3CL	100	98.467	ENSFCAG00000015782	-	100	98.467	Felis_catus
ENSBTAG00000006543	EIF3CL	100	97.700	ENSFDAG00000003588	-	100	97.700	Fukomys_damarensis
ENSBTAG00000006543	EIF3CL	99	75.679	ENSFHEG00000014154	EIF3C	98	75.679	Fundulus_heteroclitus
ENSBTAG00000006543	EIF3CL	97	75.336	ENSGMOG00000016885	eif3c	99	75.673	Gadus_morhua
ENSBTAG00000006543	EIF3CL	96	76.417	ENSGACG00000007652	eif3c	100	75.573	Gasterosteus_aculeatus
ENSBTAG00000006543	EIF3CL	92	83.353	ENSGAGG00000006666	-	100	82.999	Gopherus_agassizii
ENSBTAG00000006543	EIF3CL	54	98.456	ENSGGOG00000022677	-	100	98.456	Gorilla_gorilla
ENSBTAG00000006543	EIF3CL	99	95.490	ENSGGOG00000026919	EIF3C	100	97.725	Gorilla_gorilla
ENSBTAG00000006543	EIF3CL	100	97.809	ENSHGLG00000011445	EIF3C	100	97.809	Heterocephalus_glaber_female
ENSBTAG00000006543	EIF3CL	100	97.809	ENSHGLG00100000217	EIF3C	100	97.809	Heterocephalus_glaber_male
ENSBTAG00000006543	EIF3CL	99	75.461	ENSHCOG00000019694	eif3c	98	75.463	Hippocampus_comes
ENSBTAG00000006543	EIF3CL	99	75.978	ENSIPUG00000016878	eif3c	98	76.471	Ictalurus_punctatus
ENSBTAG00000006543	EIF3CL	100	98.028	ENSSTOG00000021278	-	100	98.028	Ictidomys_tridecemlineatus
ENSBTAG00000006543	EIF3CL	100	97.152	ENSJJAG00000012722	Eif3c	100	97.152	Jaculus_jaculus
ENSBTAG00000006543	EIF3CL	99	76.406	ENSKMAG00000021662	eif3c	97	74.891	Kryptolebias_marmoratus
ENSBTAG00000006543	EIF3CL	99	74.917	ENSLBEG00000023370	eif3c	99	74.110	Labrus_bergylta
ENSBTAG00000006543	EIF3CL	100	78.689	ENSLACG00000000770	eif3c	100	79.935	Latimeria_chalumnae
ENSBTAG00000006543	EIF3CL	100	97.809	ENSLAFG00000027426	-	100	97.809	Loxodonta_africana
ENSBTAG00000006543	EIF3CL	100	97.919	ENSMFAG00000041930	-	100	97.919	Macaca_fascicularis
ENSBTAG00000006543	EIF3CL	100	97.919	ENSMMUG00000011798	-	100	97.919	Macaca_mulatta
ENSBTAG00000006543	EIF3CL	100	97.919	ENSMNEG00000023915	-	100	97.919	Macaca_nemestrina
ENSBTAG00000006543	EIF3CL	100	97.919	ENSMLEG00000027529	-	100	97.919	Mandrillus_leucophaeus
ENSBTAG00000006543	EIF3CL	99	78.241	ENSMAMG00000012512	eif3c	95	84.667	Mastacembelus_armatus
ENSBTAG00000006543	EIF3CL	84	80.782	ENSMZEG00005013685	eif3c	92	80.782	Maylandia_zebra
ENSBTAG00000006543	EIF3CL	84	83.471	ENSMZEG00005013699	eif3c	89	83.471	Maylandia_zebra
ENSBTAG00000006543	EIF3CL	100	97.152	ENSMAUG00000010621	Eif3c	100	97.152	Mesocricetus_auratus
ENSBTAG00000006543	EIF3CL	100	98.028	ENSMICG00000036748	-	100	98.028	Microcebus_murinus
ENSBTAG00000006543	EIF3CL	100	95.181	ENSMOCG00000004204	Eif3c	100	94.304	Microtus_ochrogaster
ENSBTAG00000006543	EIF3CL	100	71.632	ENSMMOG00000001572	eif3c	94	82.838	Mola_mola
ENSBTAG00000006543	EIF3CL	100	94.201	ENSMODG00000015579	-	100	92.998	Monodelphis_domestica
ENSBTAG00000006543	EIF3CL	84	84.577	ENSMALG00000008907	eif3c	92	84.437	Monopterus_albus
ENSBTAG00000006543	EIF3CL	100	95.833	MGP_CAROLIEiJ_G0030451	Eif3c	100	95.833	Mus_caroli
ENSBTAG00000006543	EIF3CL	100	95.833	ENSMUSG00000030738	Eif3c	100	95.833	Mus_musculus
ENSBTAG00000006543	EIF3CL	100	95.504	MGP_PahariEiJ_G0013661	Eif3c	100	95.504	Mus_pahari
ENSBTAG00000006543	EIF3CL	100	95.833	MGP_SPRETEiJ_G0031565	Eif3c	100	95.833	Mus_spretus
ENSBTAG00000006543	EIF3CL	96	97.727	ENSMPUG00000012732	-	100	97.727	Mustela_putorius_furo
ENSBTAG00000006543	EIF3CL	100	97.043	ENSMLUG00000015558	-	100	97.043	Myotis_lucifugus
ENSBTAG00000006543	EIF3CL	100	97.590	ENSNGAG00000007177	-	100	97.590	Nannospalax_galili
ENSBTAG00000006543	EIF3CL	93	87.273	ENSNGAG00000010901	-	98	87.273	Nannospalax_galili
ENSBTAG00000006543	EIF3CL	100	83.369	ENSNLEG00000001425	-	91	93.333	Nomascus_leucogenys
ENSBTAG00000006543	EIF3CL	100	77.486	ENSMEUG00000009939	-	99	76.175	Notamacropus_eugenii
ENSBTAG00000006543	EIF3CL	86	69.531	ENSMEUG00000005317	-	95	72.414	Notamacropus_eugenii
ENSBTAG00000006543	EIF3CL	100	97.809	ENSOPRG00000000931	-	100	97.809	Ochotona_princeps
ENSBTAG00000006543	EIF3CL	100	97.700	ENSODEG00000013508	-	100	97.700	Octodon_degus
ENSBTAG00000006543	EIF3CL	66	63.201	ENSONIG00000011434	eif3c	99	63.201	Oreochromis_niloticus
ENSBTAG00000006543	EIF3CL	100	90.625	ENSOANG00000011410	-	100	89.655	Ornithorhynchus_anatinus
ENSBTAG00000006543	EIF3CL	100	98.248	ENSOCUG00000022489	-	100	98.248	Oryctolagus_cuniculus
ENSBTAG00000006543	EIF3CL	99	75.055	ENSORLG00000006318	eif3c	95	74.232	Oryzias_latipes
ENSBTAG00000006543	EIF3CL	99	75.055	ENSORLG00020015713	eif3c	91	82.881	Oryzias_latipes_hni
ENSBTAG00000006543	EIF3CL	99	75.055	ENSORLG00015013772	eif3c	97	74.393	Oryzias_latipes_hsok
ENSBTAG00000006543	EIF3CL	100	74.138	ENSOMEG00000020450	eif3c	100	73.599	Oryzias_melastigma
ENSBTAG00000006543	EIF3CL	100	97.700	ENSOGAG00000012737	-	100	97.700	Otolemur_garnettii
ENSBTAG00000006543	EIF3CL	100	99.452	ENSOARG00000002892	-	100	99.452	Ovis_aries
ENSBTAG00000006543	EIF3CL	100	98.467	ENSPPRG00000012336	-	100	98.467	Panthera_pardus
ENSBTAG00000006543	EIF3CL	100	98.467	ENSPTIG00000011712	-	100	98.467	Panthera_tigris_altaica
ENSBTAG00000006543	EIF3CL	100	97.919	ENSPANG00000021151	-	100	97.919	Papio_anubis
ENSBTAG00000006543	EIF3CL	99	76.471	ENSPKIG00000002049	eif3c	98	75.754	Paramormyrops_kingsleyae
ENSBTAG00000006543	EIF3CL	89	84.743	ENSPMGG00000005409	eif3c	94	84.743	Periophthalmus_magnuspinnatus
ENSBTAG00000006543	EIF3CL	100	95.943	ENSPEMG00000010899	Eif3c	100	95.524	Peromyscus_maniculatus_bairdii
ENSBTAG00000006543	EIF3CL	100	94.311	ENSPCIG00000025206	-	100	93.326	Phascolarctos_cinereus
ENSBTAG00000006543	EIF3CL	99	75.896	ENSPFOG00000004476	eif3c	98	74.891	Poecilia_formosa
ENSBTAG00000006543	EIF3CL	100	71.694	ENSPLAG00000017480	eif3c	98	74.941	Poecilia_latipinna
ENSBTAG00000006543	EIF3CL	99	76.087	ENSPMEG00000019512	eif3c	98	75.082	Poecilia_mexicana
ENSBTAG00000006543	EIF3CL	100	72.350	ENSPREG00000023139	eif3c	70	83.582	Poecilia_reticulata
ENSBTAG00000006543	EIF3CL	100	94.743	ENSPPYG00000007227	-	100	93.757	Pongo_abelii
ENSBTAG00000006543	EIF3CL	66	99.002	ENSPCAG00000012710	-	100	99.002	Procavia_capensis
ENSBTAG00000006543	EIF3CL	100	98.248	ENSPCOG00000019289	-	100	98.248	Propithecus_coquereli
ENSBTAG00000006543	EIF3CL	100	97.809	ENSPVAG00000005804	-	100	97.809	Pteropus_vampyrus
ENSBTAG00000006543	EIF3CL	50	81.212	ENSPNYG00000016530	eif3c	81	81.212	Pundamilia_nyererei
ENSBTAG00000006543	EIF3CL	99	76.696	ENSPNAG00000024040	eif3c	99	76.940	Pygocentrus_nattereri
ENSBTAG00000006543	EIF3CL	100	96.714	ENSRNOG00000018761	Eif3c	100	96.714	Rattus_norvegicus
ENSBTAG00000006543	EIF3CL	97	97.848	ENSRBIG00000044009	-	98	93.629	Rhinopithecus_bieti
ENSBTAG00000006543	EIF3CL	100	97.919	ENSRROG00000043626	-	100	97.919	Rhinopithecus_roxellana
ENSBTAG00000006543	EIF3CL	77	31.365	YMR309C	-	82	31.148	Saccharomyces_cerevisiae
ENSBTAG00000006543	EIF3CL	100	97.590	ENSSBOG00000032155	-	100	97.590	Saimiri_boliviensis_boliviensis
ENSBTAG00000006543	EIF3CL	96	93.771	ENSSHAG00000011808	-	100	92.752	Sarcophilus_harrisii
ENSBTAG00000006543	EIF3CL	99	75.847	ENSSFOG00015021823	eif3c	98	76.284	Scleropages_formosus
ENSBTAG00000006543	EIF3CL	97	76.629	ENSSMAG00000016638	eif3c	97	76.404	Scophthalmus_maximus
ENSBTAG00000006543	EIF3CL	99	76.906	ENSSDUG00000023117	eif3c	100	80.240	Seriola_dumerili
ENSBTAG00000006543	EIF3CL	99	76.580	ENSSLDG00000009706	eif3c	93	83.660	Seriola_lalandi_dorsalis
ENSBTAG00000006543	EIF3CL	100	84.792	ENSSPUG00000016470	-	100	84.573	Sphenodon_punctatus
ENSBTAG00000006543	EIF3CL	100	76.196	ENSSPAG00000000426	eif3c	100	75.870	Stegastes_partitus
ENSBTAG00000006543	EIF3CL	100	98.467	ENSSSCG00000034927	-	100	98.467	Sus_scrofa
ENSBTAG00000006543	EIF3CL	99	73.741	ENSTRUG00000008951	eif3c	99	73.955	Takifugu_rubripes
ENSBTAG00000006543	EIF3CL	100	73.913	ENSTNIG00000015210	eif3c	100	73.060	Tetraodon_nigroviridis
ENSBTAG00000006543	EIF3CL	100	98.028	ENSTTRG00000005880	-	100	98.028	Tursiops_truncatus
ENSBTAG00000006543	EIF3CL	72	99.084	ENSUAMG00000001127	-	91	100.000	Ursus_americanus
ENSBTAG00000006543	EIF3CL	100	98.357	ENSUMAG00000010927	-	100	98.357	Ursus_maritimus
ENSBTAG00000006543	EIF3CL	100	96.933	ENSVVUG00000025970	-	100	96.933	Vulpes_vulpes
ENSBTAG00000006543	EIF3CL	100	78.270	ENSXETG00000002941	eif3c	100	78.162	Xenopus_tropicalis
ENSBTAG00000006543	EIF3CL	100	75.836	ENSXMAG00000013796	eif3c	100	75.459	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001732	formation of cytoplasmic translation initiation complex	-	IEA	Process
GO:0003743	translation initiation factor activity	-	ISS	Function
GO:0005852	eukaryotic translation initiation factor 3 complex	-	ISS	Component
GO:0006413	translational initiation	-	ISS	Process
GO:0016282	eukaryotic 43S preinitiation complex	-	IEA	Component
GO:0033290	eukaryotic 48S preinitiation complex	-	IEA	Component