EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSBTAG00000006884 (Gene tree)
Gene ID
282298
Gene Symbol
PABPN1
Alias
-
Full Name
Bos taurus poly(A) binding protein nuclear 1 (PABPN1)%2C mRNA.
Gene Type
protein_coding
Species
Bos_taurus
Status
putative
Strand
Minus strand
Length
6899 bases
Position
chr10:21590451-21597349
Accession
NM_174569
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSBTAP00000063564RRM_1PF00076.229.5e-1511
ENSBTAP00000021887RRM_1PF00076.221e-1411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSBTAT00000021887-3896-ENSBTAP00000021887306 (aa)-Q28165
ENSBTAT00000073156-3985-ENSBTAP00000063564296 (aa)-A3KN10
Gene Model
Click here to download ENSBTAG00000006884's gene model file
Pathways
Pathway IDPathway NameSource
bta03015mRNA surveillance pathwayKEGG
bta05164Influenza AKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000006884's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSBTAG00000006884PABPN18880.000ENSBTAG00000050594-8986.792
ENSBTAG00000006884PABPN15445.029ENSBTAG00000023752-7045.178
ENSBTAG00000006884PABPN16298.429ENSBTAG00000053753-7198.429
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSBTAG00000006884PABPN162100.000ENSG00000258643BCL2L2-PABPN157100.000Homo_sapiens
ENSBTAG00000006884PABPN110099.346ENSG00000100836PABPN1100100.000Homo_sapiens
ENSBTAG00000006884PABPN18669.318ENSAPOG00000016425pabpn18483.333Acanthochromis_polyacanthus
ENSBTAG00000006884PABPN162100.000ENSAMEG00000007048BCL2L2-PABPN1100100.000Ailuropoda_melanoleuca
ENSBTAG00000006884PABPN18369.600ENSACIG00000021744pabpn19482.143Amphilophus_citrinellus
ENSBTAG00000006884PABPN18669.318ENSAOCG00000015805pabpn18483.333Amphiprion_ocellaris
ENSBTAG00000006884PABPN18669.318ENSAPEG00000009623pabpn18483.333Amphiprion_percula
ENSBTAG00000006884PABPN18669.697ENSATEG00000020531pabpn18483.838Anabas_testudineus
ENSBTAG00000006884PABPN16688.670ENSACAG00000006185-7388.350Anolis_carolinensis
ENSBTAG00000006884PABPN110090.850ENSANAG00000024513-10090.850Aotus_nancymaae
ENSBTAG00000006884PABPN18468.254ENSACLG00000016374pabpn16383.243Astatotilapia_calliptera
ENSBTAG00000006884PABPN18670.455ENSAMXG00000000452pabpn19483.929Astyanax_mexicanus
ENSBTAG00000006884PABPN15898.315ENSCJAG00000004407-8998.315Callithrix_jacchus
ENSBTAG00000006884PABPN110099.346ENSCJAG00000007960-10099.346Callithrix_jacchus
ENSBTAG00000006884PABPN110096.405ENSCAFG00000011482PABPN110096.405Canis_familiaris
ENSBTAG00000006884PABPN110099.346ENSCAFG00020007298-10099.346Canis_lupus_dingo
ENSBTAG00000006884PABPN110099.346ENSCAFG00020006651-10099.346Canis_lupus_dingo
ENSBTAG00000006884PABPN110099.673ENSCHIG00000012184PABPN110099.673Capra_hircus
ENSBTAG00000006884PABPN162100.000ENSTSYG00000033996BCL2L2-PABPN1100100.000Carlito_syrichta
ENSBTAG00000006884PABPN110097.712ENSCPOG00000025574PABPN110097.712Cavia_porcellus
ENSBTAG00000006884PABPN110099.346ENSCCAG00000033954BCL2L2-PABPN110099.346Cebus_capucinus
ENSBTAG00000006884PABPN110099.346ENSCATG00000038536BCL2L2-PABPN110099.346Cercocebus_atys
ENSBTAG00000006884PABPN16779.902ENSCLAG00000012423PABPN16279.902Chinchilla_lanigera
ENSBTAG00000006884PABPN110097.712ENSCSAG00000016036PABPN110097.712Chlorocebus_sabaeus
ENSBTAG00000006884PABPN16488.557ENSCHOG00000004798BCL2L2-PABPN18987.440Choloepus_hoffmanni
ENSBTAG00000006884PABPN15592.814ENSCPBG00000026060-9492.814Chrysemys_picta_bellii
ENSBTAG00000006884PABPN16860.386ENSCING00000012468-8465.174Ciona_intestinalis
ENSBTAG00000006884PABPN15860.674ENSCSAVG00000002001-9362.275Ciona_savignyi
ENSBTAG00000006884PABPN19681.695ENSCANG00000030980-7383.824Colobus_angolensis_palliatus
ENSBTAG00000006884PABPN162100.000ENSCANG00000009750BCL2L2-PABPN1100100.000Colobus_angolensis_palliatus
ENSBTAG00000006884PABPN110096.732ENSCGRG00001019696Pabpn110099.438Cricetulus_griseus_chok1gshd
ENSBTAG00000006884PABPN15899.438ENSCGRG00000011102Pabpn110099.438Cricetulus_griseus_crigri
ENSBTAG00000006884PABPN18669.318ENSCSEG00000008774pabpn18980.383Cynoglossus_semilaevis
ENSBTAG00000006884PABPN18666.667ENSCVAG00000003152pabpn18482.323Cyprinodon_variegatus
ENSBTAG00000006884PABPN18470.120ENSDARG00000045373pabpn18584.500Danio_rerio
ENSBTAG00000006884PABPN110099.346ENSDNOG00000023682PABPN110099.346Dasypus_novemcinctus
ENSBTAG00000006884PABPN110098.039ENSDORG00000028966-10098.039Dipodomys_ordii
ENSBTAG00000006884PABPN16263.351FBgn0005648Pabp28263.351Drosophila_melanogaster
ENSBTAG00000006884PABPN16379.487ENSEBUG00000002322pabpn18379.897Eptatretus_burgeri
ENSBTAG00000006884PABPN110099.346ENSEASG00005011716PABPN110099.346Equus_asinus_asinus
ENSBTAG00000006884PABPN19999.320ENSECAG00000011652PABPN19999.320Equus_caballus
ENSBTAG00000006884PABPN19390.493ENSEEUG00000012973-7292.453Erinaceus_europaeus
ENSBTAG00000006884PABPN18672.348ENSELUG00000022654pabpn18386.869Esox_lucius
ENSBTAG00000006884PABPN110099.346ENSFCAG00000031922PABPN110099.346Felis_catus
ENSBTAG00000006884PABPN15898.876ENSFDAG00000018381BCL2L2-PABPN110098.876Fukomys_damarensis
ENSBTAG00000006884PABPN18665.152ENSFHEG00000007215pabpn18481.313Fundulus_heteroclitus
ENSBTAG00000006884PABPN18569.960ENSGMOG00000003922pabpn16584.574Gadus_morhua
ENSBTAG00000006884PABPN16389.796ENSGALG00000052930-7974.170Gallus_gallus
ENSBTAG00000006884PABPN18669.057ENSGAFG00000017099pabpn18483.417Gambusia_affinis
ENSBTAG00000006884PABPN18666.667ENSGACG00000002167pabpn18579.524Gasterosteus_aculeatus
ENSBTAG00000006884PABPN19277.660ENSGGOG00000039675-7980.476Gorilla_gorilla
ENSBTAG00000006884PABPN110099.346ENSGGOG00000022683-10099.346Gorilla_gorilla
ENSBTAG00000006884PABPN19381.469ENSGGOG00000025919-9884.459Gorilla_gorilla
ENSBTAG00000006884PABPN18669.697ENSHBUG00000019523pabpn18483.838Haplochromis_burtoni
ENSBTAG00000006884PABPN19274.021ENSHGLG00000018588-7180.569Heterocephalus_glaber_female
ENSBTAG00000006884PABPN110097.712ENSHGLG00000002927-10097.712Heterocephalus_glaber_female
ENSBTAG00000006884PABPN15576.048ENSHGLG00000009842-9376.048Heterocephalus_glaber_female
ENSBTAG00000006884PABPN15588.304ENSHGLG00100018935-9488.304Heterocephalus_glaber_male
ENSBTAG00000006884PABPN16099.441ENSHGLG00100006673-10099.438Heterocephalus_glaber_male
ENSBTAG00000006884PABPN19268.929ENSHGLG00100015565-7380.569Heterocephalus_glaber_male
ENSBTAG00000006884PABPN18666.160ENSHCOG00000004655pabpn18482.828Hippocampus_comes
ENSBTAG00000006884PABPN18667.045ENSIPUG00000000180-8681.313Ictalurus_punctatus
ENSBTAG00000006884PABPN18670.833ENSIPUG00000008085PABPN18584.000Ictalurus_punctatus
ENSBTAG00000006884PABPN158100.000ENSSTOG00000029847BCL2L2-PABPN1100100.000Ictidomys_tridecemlineatus
ENSBTAG00000006884PABPN158100.000ENSJJAG00000023507Gm20521100100.000Jaculus_jaculus
ENSBTAG00000006884PABPN18668.561ENSKMAG00000018748pabpn18482.915Kryptolebias_marmoratus
ENSBTAG00000006884PABPN18669.697ENSLBEG00000027266pabpn18483.838Labrus_bergylta
ENSBTAG00000006884PABPN16087.778ENSLACG00000000646pabpn17989.560Latimeria_chalumnae
ENSBTAG00000006884PABPN18471.032ENSLOCG00000000796pabpn16785.484Lepisosteus_oculatus
ENSBTAG00000006884PABPN16765.534ENSLOCG00000004694pabpn1l9465.534Lepisosteus_oculatus
ENSBTAG00000006884PABPN162100.000ENSMFAG00000032183BCL2L2-PABPN1100100.000Macaca_fascicularis
ENSBTAG00000006884PABPN19778.595ENSMMUG00000048382-6883.333Macaca_mulatta
ENSBTAG00000006884PABPN110090.850ENSMMUG00000014747BCL2L2-PABPN1100100.000Macaca_mulatta
ENSBTAG00000006884PABPN110099.346ENSMNEG00000045065BCL2L2-PABPN110099.346Macaca_nemestrina
ENSBTAG00000006884PABPN17482.796ENSMNEG00000035750-9992.908Macaca_nemestrina
ENSBTAG00000006884PABPN162100.000ENSMLEG00000043862BCL2L2-PABPN1100100.000Mandrillus_leucophaeus
ENSBTAG00000006884PABPN19773.986ENSMLEG00000034623-9990.780Mandrillus_leucophaeus
ENSBTAG00000006884PABPN18470.238ENSMAMG00000007979pabpn16683.077Mastacembelus_armatus
ENSBTAG00000006884PABPN18469.841ENSMZEG00005011904pabpn16483.871Maylandia_zebra
ENSBTAG00000006884PABPN19896.678ENSMAUG00000007383Gm205219996.678Mesocricetus_auratus
ENSBTAG00000006884PABPN110099.020ENSMICG00000010002BCL2L2-PABPN110099.020Microcebus_murinus
ENSBTAG00000006884PABPN110096.405ENSMOCG00000018557Gm2052110096.405Microtus_ochrogaster
ENSBTAG00000006884PABPN18670.076ENSMMOG00000005405pabpn18484.343Mola_mola
ENSBTAG00000006884PABPN19996.259ENSMODG00000004535-9996.040Monodelphis_domestica
ENSBTAG00000006884PABPN18469.841ENSMALG00000019612pabpn16683.077Monopterus_albus
ENSBTAG00000006884PABPN16297.884MGP_CAROLIEiJ_G0019276Gm205215797.884Mus_caroli
ENSBTAG00000006884PABPN110095.752MGP_CAROLIEiJ_G0019277Pabpn110097.753Mus_caroli
ENSBTAG00000006884PABPN110096.078ENSMUSG00000022194Pabpn110098.315Mus_musculus
ENSBTAG00000006884PABPN16298.413ENSMUSG00000092232Gm205215798.413Mus_musculus
ENSBTAG00000006884PABPN16298.413MGP_PahariEiJ_G0030294Gm205215798.413Mus_pahari
ENSBTAG00000006884PABPN110096.078MGP_PahariEiJ_G0030295Pabpn110098.315Mus_pahari
ENSBTAG00000006884PABPN16298.413MGP_SPRETEiJ_G0020165Gm205215798.413Mus_spretus
ENSBTAG00000006884PABPN110096.078MGP_SPRETEiJ_G0020166Pabpn110098.315Mus_spretus
ENSBTAG00000006884PABPN157100.000ENSMPUG00000006775-100100.000Mustela_putorius_furo
ENSBTAG00000006884PABPN19288.380ENSMLUG00000012452-7092.056Myotis_lucifugus
ENSBTAG00000006884PABPN16297.884ENSMLUG00000003800-10097.884Myotis_lucifugus
ENSBTAG00000006884PABPN19578.621ENSMLUG00000028677-7594.608Myotis_lucifugus
ENSBTAG00000006884PABPN162100.000ENSNGAG00000019529Gm2052157100.000Nannospalax_galili
ENSBTAG00000006884PABPN18469.841ENSNBRG00000023955pabpn19482.143Neolamprologus_brichardi
ENSBTAG00000006884PABPN167100.000ENSNLEG00000015007-7599.057Nomascus_leucogenys
ENSBTAG00000006884PABPN19775.839ENSNLEG00000030598-7981.132Nomascus_leucogenys
ENSBTAG00000006884PABPN110097.712ENSODEG00000002083BCL2L2-PABPN110097.712Octodon_degus
ENSBTAG00000006884PABPN15887.079ENSODEG00000011555-8986.826Octodon_degus
ENSBTAG00000006884PABPN19281.495ENSODEG00000003739-7585.520Octodon_degus
ENSBTAG00000006884PABPN18469.841ENSONIG00000008112pabpn16483.871Oreochromis_niloticus
ENSBTAG00000006884PABPN19996.711ENSOCUG00000016174PABPN110096.711Oryctolagus_cuniculus
ENSBTAG00000006884PABPN18369.636ENSORLG00000027900pabpn18281.122Oryzias_latipes
ENSBTAG00000006884PABPN16383.957ENSORLG00020004681pabpn16683.590Oryzias_latipes_hni
ENSBTAG00000006884PABPN16882.297ENSORLG00015000018pabpn18484.343Oryzias_latipes_hsok
ENSBTAG00000006884PABPN18566.667ENSOMEG00000016618pabpn16685.165Oryzias_melastigma
ENSBTAG00000006884PABPN110099.346ENSOGAG00000008710PABPN110099.346Otolemur_garnettii
ENSBTAG00000006884PABPN162100.000ENSOARG00000019336BCL2L2-PABPN152100.000Ovis_aries
ENSBTAG00000006884PABPN162100.000ENSPPAG00000028984BCL2L2-PABPN1100100.000Pan_paniscus
ENSBTAG00000006884PABPN15583.234ENSPPAG00000039421-9383.234Pan_paniscus
ENSBTAG00000006884PABPN110099.346ENSPPRG00000010567PABPN110099.346Panthera_pardus
ENSBTAG00000006884PABPN158100.000ENSPTIG00000001063BCL2L2-PABPN1100100.000Panthera_tigris_altaica
ENSBTAG00000006884PABPN19272.340ENSPTRG00000047273-6982.990Pan_troglodytes
ENSBTAG00000006884PABPN110099.346ENSPTRG00000006167BCL2L210099.346Pan_troglodytes
ENSBTAG00000006884PABPN19778.716ENSPANG00000023326-9992.908Papio_anubis
ENSBTAG00000006884PABPN110099.346ENSPANG00000021100BCL2L2-PABPN110099.346Papio_anubis
ENSBTAG00000006884PABPN16285.789ENSPKIG00000008144-6683.249Paramormyrops_kingsleyae
ENSBTAG00000006884PABPN18669.318ENSPKIG00000018052pabpn18483.838Paramormyrops_kingsleyae
ENSBTAG00000006884PABPN16463.131ENSPKIG00000008340pabpn1l9263.131Paramormyrops_kingsleyae
ENSBTAG00000006884PABPN18469.048ENSPMGG00000022027pabpn16882.979Periophthalmus_magnuspinnatus
ENSBTAG00000006884PABPN110096.732ENSPEMG00000008332Gm2052110096.732Peromyscus_maniculatus_bairdii
ENSBTAG00000006884PABPN15480.473ENSPMAG00000006212pabpn18476.355Petromyzon_marinus
ENSBTAG00000006884PABPN110096.078ENSPCIG00000027751-10096.078Phascolarctos_cinereus
ENSBTAG00000006884PABPN18666.415ENSPFOG00000010351pabpn18381.910Poecilia_formosa
ENSBTAG00000006884PABPN18568.504ENSPLAG00000022696pabpn16682.143Poecilia_latipinna
ENSBTAG00000006884PABPN18666.415ENSPMEG00000020856pabpn18481.910Poecilia_mexicana
ENSBTAG00000006884PABPN18666.792ENSPREG00000011278pabpn18482.412Poecilia_reticulata
ENSBTAG00000006884PABPN110093.581ENSPPYG00000005663PABPN110093.581Pongo_abelii
ENSBTAG00000006884PABPN17184.360ENSPCAG00000005902PABPN17284.360Procavia_capensis
ENSBTAG00000006884PABPN110099.020ENSPCOG00000028047BCL2L2-PABPN110099.020Propithecus_coquereli
ENSBTAG00000006884PABPN110096.732ENSPVAG00000005270PABPN110096.732Pteropus_vampyrus
ENSBTAG00000006884PABPN18669.697ENSPNYG00000013182pabpn18483.838Pundamilia_nyererei
ENSBTAG00000006884PABPN18670.833ENSPNAG00000023526pabpn18485.354Pygocentrus_nattereri
ENSBTAG00000006884PABPN16562.500ENSPNAG00000021666pabpn1l9464.179Pygocentrus_nattereri
ENSBTAG00000006884PABPN110096.405ENSRNOG00000042195Pabpn110096.405Rattus_norvegicus
ENSBTAG00000006884PABPN19284.643ENSRBIG00000042811-8885.377Rhinopithecus_bieti
ENSBTAG00000006884PABPN19783.000ENSRBIG00000039547-7485.294Rhinopithecus_bieti
ENSBTAG00000006884PABPN160100.000ENSRBIG00000040762BCL2L2-PABPN155100.000Rhinopithecus_bieti
ENSBTAG00000006884PABPN19281.429ENSRROG00000036409-6782.028Rhinopithecus_roxellana
ENSBTAG00000006884PABPN19982.951ENSRROG00000040409-7485.784Rhinopithecus_roxellana
ENSBTAG00000006884PABPN160100.000ENSRROG00000045535BCL2L2-PABPN1100100.000Rhinopithecus_roxellana
ENSBTAG00000006884PABPN157100.000ENSSBOG00000026930BCL2L2-PABPN1100100.000Saimiri_boliviensis_boliviensis
ENSBTAG00000006884PABPN18765.283ENSSHAG00000007707-8674.877Sarcophilus_harrisii
ENSBTAG00000006884PABPN16297.354ENSSHAG00000014841-8797.354Sarcophilus_harrisii
ENSBTAG00000006884PABPN16961.275ENSSFOG00015015833pabpn1l8763.918Scleropages_formosus
ENSBTAG00000006884PABPN17177.376ENSSFOG00015012565pabpn18982.000Scleropages_formosus
ENSBTAG00000006884PABPN18669.318ENSSFOG00015014718pabpn18483.333Scleropages_formosus
ENSBTAG00000006884PABPN18669.697ENSSMAG00000020157pabpn18483.838Scophthalmus_maximus
ENSBTAG00000006884PABPN18469.048ENSSDUG00000020582pabpn16683.077Seriola_dumerili
ENSBTAG00000006884PABPN18669.697ENSSLDG00000007118pabpn18483.838Seriola_lalandi_dorsalis
ENSBTAG00000006884PABPN15591.617ENSSPUG00000018308-9491.617Sphenodon_punctatus
ENSBTAG00000006884PABPN18669.697ENSSPAG00000021658pabpn18483.838Stegastes_partitus
ENSBTAG00000006884PABPN110099.346ENSSSCG00000002023PABPN110099.346Sus_scrofa
ENSBTAG00000006884PABPN17373.094ENSSSCG00000034805-7372.432Sus_scrofa
ENSBTAG00000006884PABPN15855.114ENSSSCG00000038472-9154.491Sus_scrofa
ENSBTAG00000006884PABPN18670.076ENSTRUG00000023664pabpn18484.343Takifugu_rubripes
ENSBTAG00000006884PABPN16781.910ENSTNIG00000005369pabpn19280.100Tetraodon_nigroviridis
ENSBTAG00000006884PABPN110098.693ENSUAMG00000024460PABPN110098.693Ursus_americanus
ENSBTAG00000006884PABPN162100.000ENSUMAG00000014288BCL2L2-PABPN157100.000Ursus_maritimus
ENSBTAG00000006884PABPN162100.000ENSVVUG00000019912BCL2L2-PABPN17698.446Vulpes_vulpes
ENSBTAG00000006884PABPN16490.306ENSXETG00000014597pabpn16692.893Xenopus_tropicalis
ENSBTAG00000006884PABPN15768.927ENSXCOG00000005158pabpn18981.579Xiphophorus_couchianus
ENSBTAG00000006884PABPN18667.170ENSXMAG00000006196pabpn18482.915Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000165MAPK cascade-ISSProcess
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-ISSComponent
GO:0005737cytoplasm-IEAComponent
GO:0006397mRNA processing-IEAProcess
GO:0016607nuclear speck-IEAComponent
GO:0016973poly(A)+ mRNA export from nucleus-IEAProcess
GO:0042405nuclear inclusion body-ISSComponent
GO:0043621protein self-association18495660.IDAFunction
GO:0070063RNA polymerase binding-ISSFunction
GO:0071222cellular response to lipopolysaccharide-ISSProcess
GO:1904247positive regulation of polynucleotide adenylyltransferase activity-ISSProcess
GO:1990904ribonucleoprotein complex-ISSComponent

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