EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000007210 (Gene tree)
Gene ID: 521304
Gene Symbol: RBFOX1
Alias: -
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 213651 bases
Position: chr25:6424841-6638491
Accession: 33777
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000069783	Fox-1_C	PF12414.8	2.1e-40	1	1
ENSBTAP00000067031	Fox-1_C	PF12414.8	2.3e-40	1	1
ENSBTAP00000066729	Fox-1_C	PF12414.8	2.6e-38	1	1
ENSBTAP00000009490	Fox-1_C	PF12414.8	7.9e-21	1	2
ENSBTAP00000009490	Fox-1_C	PF12414.8	7.9e-21	2	2
ENSBTAP00000066729	RRM_1	PF00076.22	3.2e-18	1	1
ENSBTAP00000069783	RRM_1	PF00076.22	3.7e-18	1	1
ENSBTAP00000067031	RRM_1	PF00076.22	3.8e-18	1	1
ENSBTAP00000009490	RRM_1	PF00076.22	5.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000072442	-	2317	-	ENSBTAP00000067031	376 (aa)	-	UPI0000612E85
ENSBTAT00000081535	-	2320	-	ENSBTAP00000066729	377 (aa)	-	-
ENSBTAT00000071871	-	2267	-	ENSBTAP00000069783	400 (aa)	-	-
ENSBTAT00000009490	-	1032	-	ENSBTAP00000009490	343 (aa)	-	F1MWC7

Gene Model

Click here to download ENSBTAG00000007210's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000007210's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000007210	RBFOX1	100	61.283	ENSBTAG00000020125	RBFOX2	100	61.220
ENSBTAG00000007210	RBFOX1	74	71.174	ENSBTAG00000006280	RBFOX3	100	53.590

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000007210	RBFOX1	98	98.462	ENSG00000078328	RBFOX1	100	97.884	Homo_sapiens
ENSBTAG00000007210	RBFOX1	100	73.684	ENSAPOG00000003197	rbfox1	100	73.445	Acanthochromis_polyacanthus
ENSBTAG00000007210	RBFOX1	59	95.495	ENSAMEG00000008605	RBFOX1	89	95.495	Ailuropoda_melanoleuca
ENSBTAG00000007210	RBFOX1	55	75.481	ENSACIG00000005478	rbfox1	68	62.752	Amphilophus_citrinellus
ENSBTAG00000007210	RBFOX1	80	70.032	ENSAOCG00000008283	rbfox1	99	69.716	Amphiprion_ocellaris
ENSBTAG00000007210	RBFOX1	95	70.976	ENSAPEG00000010636	rbfox1	100	70.604	Amphiprion_percula
ENSBTAG00000007210	RBFOX1	80	68.652	ENSATEG00000007513	rbfox1	99	68.339	Anabas_testudineus
ENSBTAG00000007210	RBFOX1	98	91.837	ENSAPLG00000013263	RBFOX1	98	91.837	Anas_platyrhynchos
ENSBTAG00000007210	RBFOX1	99	84.635	ENSACAG00000004013	RBFOX1	99	84.635	Anolis_carolinensis
ENSBTAG00000007210	RBFOX1	100	98.500	ENSANAG00000029527	RBFOX1	100	98.500	Aotus_nancymaae
ENSBTAG00000007210	RBFOX1	60	86.667	ENSAMXG00000002431	rbfox1	65	86.667	Astyanax_mexicanus
ENSBTAG00000007210	RBFOX1	98	98.462	ENSCJAG00000017351	RBFOX1	93	98.462	Callithrix_jacchus
ENSBTAG00000007210	RBFOX1	98	98.718	ENSCAFG00000019082	RBFOX1	93	99.183	Canis_familiaris
ENSBTAG00000007210	RBFOX1	97	84.699	ENSCAFG00020024881	RBFOX1	92	85.014	Canis_lupus_dingo
ENSBTAG00000007210	RBFOX1	100	99.500	ENSCHIG00000023549	RBFOX1	100	99.500	Capra_hircus
ENSBTAG00000007210	RBFOX1	97	98.630	ENSTSYG00000005334	RBFOX1	100	98.201	Carlito_syrichta
ENSBTAG00000007210	RBFOX1	98	98.205	ENSCAPG00000017669	RBFOX1	100	96.144	Cavia_aperea
ENSBTAG00000007210	RBFOX1	98	98.205	ENSCPOG00000011314	RBFOX1	100	95.420	Cavia_porcellus
ENSBTAG00000007210	RBFOX1	98	98.462	ENSCCAG00000023031	RBFOX1	93	98.462	Cebus_capucinus
ENSBTAG00000007210	RBFOX1	98	98.462	ENSCATG00000033816	RBFOX1	99	92.800	Cercocebus_atys
ENSBTAG00000007210	RBFOX1	100	97.606	ENSCLAG00000012761	RBFOX1	100	97.606	Chinchilla_lanigera
ENSBTAG00000007210	RBFOX1	100	98.936	ENSCSAG00000008739	RBFOX1	100	98.936	Chlorocebus_sabaeus
ENSBTAG00000007210	RBFOX1	98	75.510	ENSCHOG00000012843	RBFOX1	94	75.510	Choloepus_hoffmanni
ENSBTAG00000007210	RBFOX1	100	94.149	ENSCPBG00000026626	RBFOX1	100	94.149	Chrysemys_picta_bellii
ENSBTAG00000007210	RBFOX1	98	98.462	ENSCANG00000033125	RBFOX1	93	98.462	Colobus_angolensis_palliatus
ENSBTAG00000007210	RBFOX1	98	96.939	ENSCGRG00001013729	Rbfox1	99	94.416	Cricetulus_griseus_chok1gshd
ENSBTAG00000007210	RBFOX1	98	96.939	ENSCGRG00000003272	Rbfox1	99	94.416	Cricetulus_griseus_crigri
ENSBTAG00000007210	RBFOX1	95	69.347	ENSCSEG00000008840	rbfox1	100	69.347	Cynoglossus_semilaevis
ENSBTAG00000007210	RBFOX1	100	79.302	ENSDARG00000014746	rbfox1	100	86.829	Danio_rerio
ENSBTAG00000007210	RBFOX1	98	96.410	ENSDNOG00000043612	RBFOX1	94	96.410	Dasypus_novemcinctus
ENSBTAG00000007210	RBFOX1	98	93.384	ENSDORG00000010024	Rbfox1	98	92.424	Dipodomys_ordii
ENSBTAG00000007210	RBFOX1	98	77.436	ENSETEG00000003771	RBFOX1	93	77.436	Echinops_telfairi
ENSBTAG00000007210	RBFOX1	100	99.250	ENSEASG00005011599	RBFOX1	100	99.250	Equus_asinus_asinus
ENSBTAG00000007210	RBFOX1	100	99.202	ENSECAG00000012667	RBFOX1	100	99.202	Equus_caballus
ENSBTAG00000007210	RBFOX1	82	68.605	ENSELUG00000013096	rbfox1	97	68.605	Esox_lucius
ENSBTAG00000007210	RBFOX1	100	98.936	ENSFCAG00000025322	RBFOX1	100	98.936	Felis_catus
ENSBTAG00000007210	RBFOX1	86	94.427	ENSFALG00000004027	RBFOX1	97	94.427	Ficedula_albicollis
ENSBTAG00000007210	RBFOX1	98	98.718	ENSFDAG00000007388	RBFOX1	99	95.685	Fukomys_damarensis
ENSBTAG00000007210	RBFOX1	98	94.293	ENSGALG00000034325	RBFOX1	97	94.536	Gallus_gallus
ENSBTAG00000007210	RBFOX1	100	93.369	ENSGAGG00000023681	RBFOX1	100	93.369	Gopherus_agassizii
ENSBTAG00000007210	RBFOX1	98	98.462	ENSGGOG00000016871	-	99	92.875	Gorilla_gorilla
ENSBTAG00000007210	RBFOX1	100	97.872	ENSHGLG00000016944	RBFOX1	100	97.872	Heterocephalus_glaber_female
ENSBTAG00000007210	RBFOX1	100	97.872	ENSHGLG00100003272	RBFOX1	100	97.872	Heterocephalus_glaber_male
ENSBTAG00000007210	RBFOX1	85	70.402	ENSHCOG00000016419	rbfox1	91	70.402	Hippocampus_comes
ENSBTAG00000007210	RBFOX1	100	81.383	ENSIPUG00000015215	rbfox1	100	81.383	Ictalurus_punctatus
ENSBTAG00000007210	RBFOX1	100	97.340	ENSSTOG00000000322	RBFOX1	100	97.340	Ictidomys_tridecemlineatus
ENSBTAG00000007210	RBFOX1	98	94.359	ENSJJAG00000002575	Rbfox1	99	91.371	Jaculus_jaculus
ENSBTAG00000007210	RBFOX1	97	73.048	ENSLBEG00000014659	rbfox1	98	72.544	Labrus_bergylta
ENSBTAG00000007210	RBFOX1	98	84.224	ENSLOCG00000006675	rbfox1	98	84.224	Lepisosteus_oculatus
ENSBTAG00000007210	RBFOX1	77	99.026	ENSLAFG00000011480	RBFOX1	100	99.026	Loxodonta_africana
ENSBTAG00000007210	RBFOX1	98	98.205	ENSMFAG00000036447	RBFOX1	93	98.205	Macaca_fascicularis
ENSBTAG00000007210	RBFOX1	98	98.645	ENSMMUG00000003458	RBFOX1	99	98.645	Macaca_mulatta
ENSBTAG00000007210	RBFOX1	100	98.670	ENSMNEG00000032034	RBFOX1	93	98.205	Macaca_nemestrina
ENSBTAG00000007210	RBFOX1	98	98.462	ENSMLEG00000015382	RBFOX1	93	98.462	Mandrillus_leucophaeus
ENSBTAG00000007210	RBFOX1	95	72.774	ENSMAMG00000003142	rbfox1	100	73.282	Mastacembelus_armatus
ENSBTAG00000007210	RBFOX1	77	88.660	ENSMGAG00000008606	RBFOX1	98	88.462	Meleagris_gallopavo
ENSBTAG00000007210	RBFOX1	96	56.364	ENSMAUG00000020570	Rbfox1	96	55.325	Mesocricetus_auratus
ENSBTAG00000007210	RBFOX1	100	98.674	ENSMICG00000034286	RBFOX1	100	98.674	Microcebus_murinus
ENSBTAG00000007210	RBFOX1	98	96.939	ENSMOCG00000020932	Rbfox1	100	95.325	Microtus_ochrogaster
ENSBTAG00000007210	RBFOX1	85	71.176	ENSMMOG00000009716	rbfox1	86	70.588	Mola_mola
ENSBTAG00000007210	RBFOX1	94	97.175	ENSMODG00000005826	RBFOX1	100	97.175	Monodelphis_domestica
ENSBTAG00000007210	RBFOX1	98	74.010	ENSMALG00000003337	rbfox1	98	73.881	Monopterus_albus
ENSBTAG00000007210	RBFOX1	100	96.543	MGP_CAROLIEiJ_G0020427	Rbfox1	99	94.670	Mus_caroli
ENSBTAG00000007210	RBFOX1	98	96.939	ENSMUSG00000008658	Rbfox1	100	99.248	Mus_musculus
ENSBTAG00000007210	RBFOX1	100	96.277	MGP_PahariEiJ_G0016135	Rbfox1	99	94.670	Mus_pahari
ENSBTAG00000007210	RBFOX1	100	96.011	MGP_SPRETEiJ_G0021321	Rbfox1	99	94.162	Mus_spretus
ENSBTAG00000007210	RBFOX1	97	98.634	ENSMPUG00000014822	RBFOX1	93	98.634	Mustela_putorius_furo
ENSBTAG00000007210	RBFOX1	77	96.753	ENSMLUG00000015896	RBFOX1	100	96.753	Myotis_lucifugus
ENSBTAG00000007210	RBFOX1	98	97.704	ENSNGAG00000023276	Rbfox1	100	96.144	Nannospalax_galili
ENSBTAG00000007210	RBFOX1	98	60.145	ENSNBRG00000011084	rbfox1	95	60.145	Neolamprologus_brichardi
ENSBTAG00000007210	RBFOX1	98	98.205	ENSNLEG00000010017	-	93	98.205	Nomascus_leucogenys
ENSBTAG00000007210	RBFOX1	97	79.949	ENSMEUG00000012525	RBFOX1	93	79.949	Notamacropus_eugenii
ENSBTAG00000007210	RBFOX1	98	79.231	ENSOPRG00000006199	-	93	79.231	Ochotona_princeps
ENSBTAG00000007210	RBFOX1	98	97.436	ENSODEG00000013166	RBFOX1	99	94.416	Octodon_degus
ENSBTAG00000007210	RBFOX1	100	96.011	ENSOANG00000002379	RBFOX1	100	96.011	Ornithorhynchus_anatinus
ENSBTAG00000007210	RBFOX1	58	96.774	ENSOCUG00000001205	-	96	96.774	Oryctolagus_cuniculus
ENSBTAG00000007210	RBFOX1	99	95.431	ENSOGAG00000025535	RBFOX1	99	95.431	Otolemur_garnettii
ENSBTAG00000007210	RBFOX1	68	91.416	ENSOARG00000005135	RBFOX1	97	91.416	Ovis_aries
ENSBTAG00000007210	RBFOX1	97	98.907	ENSPPAG00000036238	-	100	98.907	Pan_paniscus
ENSBTAG00000007210	RBFOX1	98	98.462	ENSPPRG00000006546	RBFOX1	93	98.462	Panthera_pardus
ENSBTAG00000007210	RBFOX1	98	84.478	ENSPTIG00000021154	RBFOX1	100	83.503	Panthera_tigris_altaica
ENSBTAG00000007210	RBFOX1	98	98.462	ENSPTRG00000007744	RBFOX1	99	92.875	Pan_troglodytes
ENSBTAG00000007210	RBFOX1	98	98.462	ENSPANG00000026500	RBFOX1	99	92.800	Papio_anubis
ENSBTAG00000007210	RBFOX1	80	83.056	ENSPKIG00000019353	rbfox1	88	83.056	Paramormyrops_kingsleyae
ENSBTAG00000007210	RBFOX1	98	81.671	ENSPKIG00000009667	-	99	82.210	Paramormyrops_kingsleyae
ENSBTAG00000007210	RBFOX1	100	92.250	ENSPSIG00000006523	RBFOX1	100	92.250	Pelodiscus_sinensis
ENSBTAG00000007210	RBFOX1	98	97.194	ENSPEMG00000017607	Rbfox1	99	94.670	Peromyscus_maniculatus_bairdii
ENSBTAG00000007210	RBFOX1	73	91.781	ENSPCIG00000026887	RBFOX1	100	91.781	Phascolarctos_cinereus
ENSBTAG00000007210	RBFOX1	97	98.907	ENSPPYG00000007079	-	93	98.907	Pongo_abelii
ENSBTAG00000007210	RBFOX1	88	89.429	ENSPCAG00000002630	RBFOX1	93	89.429	Procavia_capensis
ENSBTAG00000007210	RBFOX1	98	98.462	ENSPCOG00000025687	RBFOX1	93	98.462	Propithecus_coquereli
ENSBTAG00000007210	RBFOX1	98	94.359	ENSPVAG00000013467	RBFOX1	93	94.359	Pteropus_vampyrus
ENSBTAG00000007210	RBFOX1	95	78.338	ENSPNAG00000023109	rbfox1	100	78.338	Pygocentrus_nattereri
ENSBTAG00000007210	RBFOX1	100	96.286	ENSRNOG00000002827	Rbfox1	100	96.286	Rattus_norvegicus
ENSBTAG00000007210	RBFOX1	100	98.939	ENSRBIG00000044478	RBFOX1	100	98.939	Rhinopithecus_bieti
ENSBTAG00000007210	RBFOX1	98	98.462	ENSRROG00000044411	RBFOX1	93	98.910	Rhinopithecus_roxellana
ENSBTAG00000007210	RBFOX1	100	96.500	ENSSBOG00000033726	RBFOX1	100	96.500	Saimiri_boliviensis_boliviensis
ENSBTAG00000007210	RBFOX1	97	91.260	ENSSHAG00000009257	RBFOX1	100	89.859	Sarcophilus_harrisii
ENSBTAG00000007210	RBFOX1	88	70.360	ENSSFOG00015009955	-	84	70.083	Scleropages_formosus
ENSBTAG00000007210	RBFOX1	100	67.079	ENSSFOG00015023675	rbfox1	100	86.667	Scleropages_formosus
ENSBTAG00000007210	RBFOX1	98	74.328	ENSSMAG00000015505	rbfox1	93	74.083	Scophthalmus_maximus
ENSBTAG00000007210	RBFOX1	98	73.418	ENSSDUG00000016413	rbfox1	99	72.911	Seriola_dumerili
ENSBTAG00000007210	RBFOX1	85	71.554	ENSSLDG00000009353	rbfox1	95	71.341	Seriola_lalandi_dorsalis
ENSBTAG00000007210	RBFOX1	85	81.818	ENSSPUG00000009732	RBFOX1	87	81.818	Sphenodon_punctatus
ENSBTAG00000007210	RBFOX1	97	73.710	ENSSPAG00000009723	rbfox1	100	73.464	Stegastes_partitus
ENSBTAG00000007210	RBFOX1	97	99.455	ENSSSCG00000007917	RBFOX1	100	99.435	Sus_scrofa
ENSBTAG00000007210	RBFOX1	98	92.308	ENSTGUG00000004562	RBFOX1	100	92.308	Taeniopygia_guttata
ENSBTAG00000007210	RBFOX1	98	73.415	ENSTRUG00000020940	rbfox1	100	73.171	Takifugu_rubripes
ENSBTAG00000007210	RBFOX1	67	54.286	ENSTNIG00000002567	rbfox1	100	55.873	Tetraodon_nigroviridis
ENSBTAG00000007210	RBFOX1	77	76.623	ENSTBEG00000009169	-	74	76.623	Tupaia_belangeri
ENSBTAG00000007210	RBFOX1	98	99.487	ENSTTRG00000005700	RBFOX1	93	99.487	Tursiops_truncatus
ENSBTAG00000007210	RBFOX1	98	93.478	ENSUAMG00000024633	RBFOX1	97	94.010	Ursus_americanus
ENSBTAG00000007210	RBFOX1	97	84.699	ENSUMAG00000003579	RBFOX1	97	84.896	Ursus_maritimus
ENSBTAG00000007210	RBFOX1	77	99.675	ENSVPAG00000001284	RBFOX1	74	99.675	Vicugna_pacos
ENSBTAG00000007210	RBFOX1	100	98.670	ENSVVUG00000017311	RBFOX1	100	98.670	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process