EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000007494 (Gene tree)
Gene ID: 540904
Gene Symbol: SMARCA2
Alias: -
Full Name: Bos taurus SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 2 (SMARCA2)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 179808 bases
Position: chr8:42369825-42549632
Accession: NM_001099115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000035551	ResIII	PF04851.15	2.7e-08	1	1
ENSBTAP00000057766	ResIII	PF04851.15	2.7e-08	1	1
ENSBTAP00000035551	BRK	PF07533.16	3.2e-17	1	1
ENSBTAP00000057766	BRK	PF07533.16	3.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000035681	-	5793	XM_015472482	ENSBTAP00000035551	1554 (aa)	XP_015327968	A5PKK5
ENSBTAT00000086834	-	1671	XM_010807855	ENSBTAP00000073683	276 (aa)	XP_010806157	UPI000059FD02
ENSBTAT00000083498	-	6004	XM_024995912	ENSBTAP00000057766	1554 (aa)	XP_024851680	UPI0001565E30

Gene Model

Click here to download ENSBTAG00000007494's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta04714	Thermogenesis	KEGG
bta05225	Hepatocellular carcinoma	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000007494's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000007494	SMARCA2	96	76.992	ENSBTAG00000019220	SMARCA4	98	76.254

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000007494	SMARCA2	100	97.201	ENSG00000080503	SMARCA2	100	100.000	Homo_sapiens
ENSBTAG00000007494	SMARCA2	100	80.088	ENSAPOG00000002641	SMARCA2	97	80.051	Acanthochromis_polyacanthus
ENSBTAG00000007494	SMARCA2	90	89.864	ENSAMEG00000012325	SMARCA2	100	97.966	Ailuropoda_melanoleuca
ENSBTAG00000007494	SMARCA2	100	80.355	ENSACIG00000015607	SMARCA2	97	80.429	Amphilophus_citrinellus
ENSBTAG00000007494	SMARCA2	100	79.925	ENSAOCG00000009647	-	97	79.731	Amphiprion_ocellaris
ENSBTAG00000007494	SMARCA2	100	80.088	ENSAPEG00000007646	SMARCA2	97	79.859	Amphiprion_percula
ENSBTAG00000007494	SMARCA2	99	80.762	ENSATEG00000006916	SMARCA2	96	81.113	Anabas_testudineus
ENSBTAG00000007494	SMARCA2	89	90.234	ENSAPLG00000013873	SMARCA2	93	90.092	Anas_platyrhynchos
ENSBTAG00000007494	SMARCA2	100	90.915	ENSACAG00000002423	SMARCA2	100	90.147	Anolis_carolinensis
ENSBTAG00000007494	SMARCA2	100	97.387	ENSANAG00000026498	SMARCA2	100	97.387	Aotus_nancymaae
ENSBTAG00000007494	SMARCA2	100	81.737	ENSACLG00000004248	SMARCA2	97	81.455	Astatotilapia_calliptera
ENSBTAG00000007494	SMARCA2	100	82.445	ENSAMXG00000012404	smarca2	97	83.181	Astyanax_mexicanus
ENSBTAG00000007494	SMARCA2	99	97.436	ENSCJAG00000010710	SMARCA2	99	97.074	Callithrix_jacchus
ENSBTAG00000007494	SMARCA2	100	98.650	ENSCAFG00000002013	SMARCA2	100	98.650	Canis_familiaris
ENSBTAG00000007494	SMARCA2	78	94.659	ENSCAFG00020026802	SMARCA2	98	94.659	Canis_lupus_dingo
ENSBTAG00000007494	SMARCA2	100	99.871	ENSCHIG00000025863	SMARCA2	100	99.871	Capra_hircus
ENSBTAG00000007494	SMARCA2	100	95.292	ENSTSYG00000003858	SMARCA2	100	96.018	Carlito_syrichta
ENSBTAG00000007494	SMARCA2	99	92.239	ENSCAPG00000002890	SMARCA2	100	92.559	Cavia_aperea
ENSBTAG00000007494	SMARCA2	100	96.688	ENSCPOG00000005475	SMARCA2	100	96.688	Cavia_porcellus
ENSBTAG00000007494	SMARCA2	100	97.452	ENSCCAG00000030636	SMARCA2	100	97.452	Cebus_capucinus
ENSBTAG00000007494	SMARCA2	100	97.196	ENSCATG00000031470	SMARCA2	100	97.196	Cercocebus_atys
ENSBTAG00000007494	SMARCA2	100	96.698	ENSCLAG00000014484	SMARCA2	100	96.698	Chinchilla_lanigera
ENSBTAG00000007494	SMARCA2	93	97.611	ENSCSAG00000008650	SMARCA2	99	97.611	Chlorocebus_sabaeus
ENSBTAG00000007494	SMARCA2	85	92.894	ENSCHOG00000004316	SMARCA2	86	92.894	Choloepus_hoffmanni
ENSBTAG00000007494	SMARCA2	97	95.191	ENSCPBG00000025463	SMARCA2	100	91.384	Chrysemys_picta_bellii
ENSBTAG00000007494	SMARCA2	100	97.639	ENSCANG00000039597	SMARCA2	100	97.639	Colobus_angolensis_palliatus
ENSBTAG00000007494	SMARCA2	100	89.122	ENSCGRG00001002323	Smarca2	100	89.724	Cricetulus_griseus_chok1gshd
ENSBTAG00000007494	SMARCA2	99	78.079	ENSCSEG00000019311	SMARCA2	97	78.135	Cynoglossus_semilaevis
ENSBTAG00000007494	SMARCA2	84	80.210	ENSCVAG00000016571	SMARCA2	95	80.062	Cyprinodon_variegatus
ENSBTAG00000007494	SMARCA2	100	82.491	ENSDARG00000008904	smarca2	97	82.521	Danio_rerio
ENSBTAG00000007494	SMARCA2	100	96.399	ENSDNOG00000006402	SMARCA2	100	96.399	Dasypus_novemcinctus
ENSBTAG00000007494	SMARCA2	100	96.754	ENSDORG00000014832	Smarca2	100	96.754	Dipodomys_ordii
ENSBTAG00000007494	SMARCA2	94	71.938	ENSEBUG00000011442	-	94	71.853	Eptatretus_burgeri
ENSBTAG00000007494	SMARCA2	86	63.097	ENSEBUG00000002449	-	95	64.448	Eptatretus_burgeri
ENSBTAG00000007494	SMARCA2	100	98.651	ENSEASG00005010312	SMARCA2	100	98.651	Equus_asinus_asinus
ENSBTAG00000007494	SMARCA2	67	98.611	ENSEEUG00000015540	-	69	98.611	Erinaceus_europaeus
ENSBTAG00000007494	SMARCA2	92	80.969	ENSELUG00000010318	smarca2	96	79.167	Esox_lucius
ENSBTAG00000007494	SMARCA2	100	98.265	ENSFCAG00000001568	SMARCA2	100	98.265	Felis_catus
ENSBTAG00000007494	SMARCA2	100	92.181	ENSFALG00000010416	SMARCA2	100	92.740	Ficedula_albicollis
ENSBTAG00000007494	SMARCA2	99	94.360	ENSFDAG00000010502	SMARCA2	99	94.335	Fukomys_damarensis
ENSBTAG00000007494	SMARCA2	100	81.246	ENSFHEG00000021250	SMARCA2	97	80.504	Fundulus_heteroclitus
ENSBTAG00000007494	SMARCA2	97	78.879	ENSGMOG00000014229	SMARCA2	97	79.006	Gadus_morhua
ENSBTAG00000007494	SMARCA2	100	93.003	ENSGALG00000010164	SMARCA2	100	92.112	Gallus_gallus
ENSBTAG00000007494	SMARCA2	95	76.435	ENSGAFG00000001164	SMARCA2	93	76.275	Gambusia_affinis
ENSBTAG00000007494	SMARCA2	99	79.593	ENSGACG00000014488	SMARCA2	97	79.053	Gasterosteus_aculeatus
ENSBTAG00000007494	SMARCA2	100	92.176	ENSGAGG00000024412	SMARCA2	100	92.048	Gopherus_agassizii
ENSBTAG00000007494	SMARCA2	100	93.099	ENSGGOG00000000513	SMARCA2	100	93.163	Gorilla_gorilla
ENSBTAG00000007494	SMARCA2	99	81.759	ENSHBUG00000006691	SMARCA2	96	81.423	Haplochromis_burtoni
ENSBTAG00000007494	SMARCA2	99	95.350	ENSHGLG00000005215	SMARCA2	99	95.096	Heterocephalus_glaber_female
ENSBTAG00000007494	SMARCA2	100	96.915	ENSHGLG00100010496	SMARCA2	100	96.915	Heterocephalus_glaber_male
ENSBTAG00000007494	SMARCA2	89	76.204	ENSHCOG00000015348	-	88	86.746	Hippocampus_comes
ENSBTAG00000007494	SMARCA2	100	80.693	ENSIPUG00000011060	smarca2	97	81.765	Ictalurus_punctatus
ENSBTAG00000007494	SMARCA2	100	96.887	ENSSTOG00000006812	SMARCA2	100	96.887	Ictidomys_tridecemlineatus
ENSBTAG00000007494	SMARCA2	100	97.136	ENSJJAG00000010867	Smarca2	100	97.136	Jaculus_jaculus
ENSBTAG00000007494	SMARCA2	100	79.045	ENSKMAG00000015844	-	98	79.222	Kryptolebias_marmoratus
ENSBTAG00000007494	SMARCA2	97	83.813	ENSLOCG00000011499	smarca2	97	83.621	Lepisosteus_oculatus
ENSBTAG00000007494	SMARCA2	100	95.957	ENSLAFG00000014061	SMARCA2	100	95.449	Loxodonta_africana
ENSBTAG00000007494	SMARCA2	100	95.791	ENSMFAG00000003814	SMARCA2	100	95.791	Macaca_fascicularis
ENSBTAG00000007494	SMARCA2	100	97.513	ENSMMUG00000015279	SMARCA2	100	97.513	Macaca_mulatta
ENSBTAG00000007494	SMARCA2	100	96.879	ENSMNEG00000041069	SMARCA2	100	96.879	Macaca_nemestrina
ENSBTAG00000007494	SMARCA2	100	94.703	ENSMLEG00000027418	SMARCA2	100	94.703	Mandrillus_leucophaeus
ENSBTAG00000007494	SMARCA2	100	79.616	ENSMAMG00000003056	SMARCA2	100	80.473	Mastacembelus_armatus
ENSBTAG00000007494	SMARCA2	99	81.918	ENSMZEG00005020709	SMARCA2	96	81.584	Maylandia_zebra
ENSBTAG00000007494	SMARCA2	76	77.822	ENSMGAG00000005160	-	100	76.627	Meleagris_gallopavo
ENSBTAG00000007494	SMARCA2	100	98.015	ENSMICG00000005162	SMARCA2	100	98.015	Microcebus_murinus
ENSBTAG00000007494	SMARCA2	100	96.249	ENSMOCG00000001611	Smarca2	100	96.249	Microtus_ochrogaster
ENSBTAG00000007494	SMARCA2	99	78.521	ENSMMOG00000014196	SMARCA2	97	78.520	Mola_mola
ENSBTAG00000007494	SMARCA2	100	93.203	ENSMODG00000003578	SMARCA2	100	92.889	Monodelphis_domestica
ENSBTAG00000007494	SMARCA2	99	81.647	ENSMALG00000009611	SMARCA2	97	81.362	Monopterus_albus
ENSBTAG00000007494	SMARCA2	100	95.391	MGP_CAROLIEiJ_G0022841	Smarca2	100	95.391	Mus_caroli
ENSBTAG00000007494	SMARCA2	100	95.389	ENSMUSG00000024921	Smarca2	99	99.441	Mus_musculus
ENSBTAG00000007494	SMARCA2	100	95.693	MGP_PahariEiJ_G0014334	Smarca2	100	95.693	Mus_pahari
ENSBTAG00000007494	SMARCA2	100	95.013	MGP_SPRETEiJ_G0023759	Smarca2	99	98.361	Mus_spretus
ENSBTAG00000007494	SMARCA2	81	97.814	ENSMPUG00000005171	SMARCA2	94	97.814	Mustela_putorius_furo
ENSBTAG00000007494	SMARCA2	99	91.824	ENSMLUG00000002342	SMARCA2	99	91.751	Myotis_lucifugus
ENSBTAG00000007494	SMARCA2	99	94.617	ENSNGAG00000000108	Smarca2	99	94.617	Nannospalax_galili
ENSBTAG00000007494	SMARCA2	95	68.414	ENSNBRG00000017998	SMARCA2	94	83.085	Neolamprologus_brichardi
ENSBTAG00000007494	SMARCA2	100	94.703	ENSNLEG00000008575	SMARCA2	100	94.703	Nomascus_leucogenys
ENSBTAG00000007494	SMARCA2	100	86.586	ENSMEUG00000009812	SMARCA2	100	86.268	Notamacropus_eugenii
ENSBTAG00000007494	SMARCA2	100	90.494	ENSOPRG00000013474	SMARCA2	100	90.558	Ochotona_princeps
ENSBTAG00000007494	SMARCA2	99	94.607	ENSODEG00000005452	SMARCA2	99	95.165	Octodon_degus
ENSBTAG00000007494	SMARCA2	99	80.000	ENSONIG00000014163	SMARCA2	97	80.385	Oreochromis_niloticus
ENSBTAG00000007494	SMARCA2	50	94.480	ENSOANG00000008299	-	95	98.248	Ornithorhynchus_anatinus
ENSBTAG00000007494	SMARCA2	100	96.453	ENSOCUG00000006320	SMARCA2	100	96.453	Oryctolagus_cuniculus
ENSBTAG00000007494	SMARCA2	100	79.523	ENSORLG00000020820	SMARCA2	100	79.425	Oryzias_latipes
ENSBTAG00000007494	SMARCA2	100	79.635	ENSORLG00015006289	SMARCA2	100	79.112	Oryzias_latipes_hsok
ENSBTAG00000007494	SMARCA2	99	81.323	ENSOMEG00000009736	-	97	80.590	Oryzias_melastigma
ENSBTAG00000007494	SMARCA2	99	94.036	ENSOGAG00000017053	SMARCA2	99	94.221	Otolemur_garnettii
ENSBTAG00000007494	SMARCA2	100	98.267	ENSOARG00000013265	SMARCA2	100	98.267	Ovis_aries
ENSBTAG00000007494	SMARCA2	100	93.167	ENSPPAG00000038717	SMARCA2	100	93.028	Pan_paniscus
ENSBTAG00000007494	SMARCA2	100	98.329	ENSPPRG00000001879	SMARCA2	100	98.329	Panthera_pardus
ENSBTAG00000007494	SMARCA2	100	95.825	ENSPTRG00000051168	SMARCA2	100	95.825	Pan_troglodytes
ENSBTAG00000007494	SMARCA2	100	90.522	ENSPANG00000025121	SMARCA2	100	90.394	Papio_anubis
ENSBTAG00000007494	SMARCA2	100	83.815	ENSPKIG00000018469	-	100	83.483	Paramormyrops_kingsleyae
ENSBTAG00000007494	SMARCA2	100	91.619	ENSPSIG00000006284	SMARCA2	100	90.521	Pelodiscus_sinensis
ENSBTAG00000007494	SMARCA2	98	75.291	ENSPMGG00000013696	-	97	75.311	Periophthalmus_magnuspinnatus
ENSBTAG00000007494	SMARCA2	100	95.108	ENSPEMG00000019821	Smarca2	100	95.172	Peromyscus_maniculatus_bairdii
ENSBTAG00000007494	SMARCA2	94	72.617	ENSPMAG00000005337	-	94	72.350	Petromyzon_marinus
ENSBTAG00000007494	SMARCA2	100	95.048	ENSPCIG00000015658	SMARCA2	100	94.727	Phascolarctos_cinereus
ENSBTAG00000007494	SMARCA2	100	79.514	ENSPFOG00000001856	SMARCA2	97	79.031	Poecilia_formosa
ENSBTAG00000007494	SMARCA2	99	79.575	ENSPLAG00000017829	SMARCA2	96	78.168	Poecilia_latipinna
ENSBTAG00000007494	SMARCA2	99	79.397	ENSPMEG00000001815	-	97	77.082	Poecilia_mexicana
ENSBTAG00000007494	SMARCA2	100	79.022	ENSPREG00000013800	SMARCA2	96	77.606	Poecilia_reticulata
ENSBTAG00000007494	SMARCA2	100	97.066	ENSPPYG00000019258	SMARCA2	100	97.066	Pongo_abelii
ENSBTAG00000007494	SMARCA2	79	86.100	ENSPCAG00000016969	SMARCA2	78	86.100	Procavia_capensis
ENSBTAG00000007494	SMARCA2	100	95.908	ENSPCOG00000025709	SMARCA2	100	95.908	Propithecus_coquereli
ENSBTAG00000007494	SMARCA2	91	99.425	ENSPVAG00000000901	SMARCA2	94	99.425	Pteropus_vampyrus
ENSBTAG00000007494	SMARCA2	100	77.981	ENSPNYG00000004533	SMARCA2	97	76.618	Pundamilia_nyererei
ENSBTAG00000007494	SMARCA2	99	83.621	ENSPNAG00000014635	smarca2	99	83.662	Pygocentrus_nattereri
ENSBTAG00000007494	SMARCA2	100	94.427	ENSRNOG00000011931	Smarca2	100	94.427	Rattus_norvegicus
ENSBTAG00000007494	SMARCA2	100	95.405	ENSRBIG00000038618	SMARCA2	100	95.405	Rhinopithecus_bieti
ENSBTAG00000007494	SMARCA2	100	96.259	ENSRROG00000019271	SMARCA2	100	96.259	Rhinopithecus_roxellana
ENSBTAG00000007494	SMARCA2	100	94.315	ENSSBOG00000034827	SMARCA2	100	94.315	Saimiri_boliviensis_boliviensis
ENSBTAG00000007494	SMARCA2	100	92.637	ENSSHAG00000007884	SMARCA2	100	92.196	Sarcophilus_harrisii
ENSBTAG00000007494	SMARCA2	91	85.188	ENSSFOG00015014870	SMARCA2	97	86.508	Scleropages_formosus
ENSBTAG00000007494	SMARCA2	100	81.179	ENSSMAG00000013707	SMARCA2	97	81.209	Scophthalmus_maximus
ENSBTAG00000007494	SMARCA2	99	80.720	ENSSDUG00000008852	-	98	79.198	Seriola_dumerili
ENSBTAG00000007494	SMARCA2	99	79.114	ENSSLDG00000025449	SMARCA2	96	79.870	Seriola_lalandi_dorsalis
ENSBTAG00000007494	SMARCA2	95	98.276	ENSSARG00000007888	SMARCA2	94	98.276	Sorex_araneus
ENSBTAG00000007494	SMARCA2	95	86.865	ENSSPUG00000001629	SMARCA2	98	86.733	Sphenodon_punctatus
ENSBTAG00000007494	SMARCA2	100	80.326	ENSSPAG00000020091	-	97	79.962	Stegastes_partitus
ENSBTAG00000007494	SMARCA2	100	99.165	ENSSSCG00000005232	SMARCA2	100	99.165	Sus_scrofa
ENSBTAG00000007494	SMARCA2	100	90.782	ENSTGUG00000005460	SMARCA2	100	90.204	Taeniopygia_guttata
ENSBTAG00000007494	SMARCA2	99	79.685	ENSTRUG00000015619	SMARCA2	97	79.923	Takifugu_rubripes
ENSBTAG00000007494	SMARCA2	67	100.000	ENSTBEG00000008767	SMARCA2	73	100.000	Tupaia_belangeri
ENSBTAG00000007494	SMARCA2	100	94.219	ENSTTRG00000002033	SMARCA2	100	94.219	Tursiops_truncatus
ENSBTAG00000007494	SMARCA2	89	96.165	ENSUAMG00000024701	SMARCA2	99	96.165	Ursus_americanus
ENSBTAG00000007494	SMARCA2	91	87.942	ENSVPAG00000001204	SMARCA2	100	87.942	Vicugna_pacos
ENSBTAG00000007494	SMARCA2	77	95.830	ENSVVUG00000004598	SMARCA2	99	95.830	Vulpes_vulpes
ENSBTAG00000007494	SMARCA2	100	83.354	ENSXETG00000015299	smarca2	100	82.857	Xenopus_tropicalis
ENSBTAG00000007494	SMARCA2	89	79.435	ENSXCOG00000011073	SMARCA2	97	78.902	Xiphophorus_couchianus
ENSBTAG00000007494	SMARCA2	100	78.814	ENSXMAG00000015611	SMARCA2	99	79.221	Xiphophorus_maculatus