EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000007755 (Gene tree)
Gene ID: 108771180
Gene Symbol: APOBEC3H
Alias: APOBEC3Z3
Full Name: Bos taurus apolipoprotein B mRNA editing enzyme catalytic subunit 3H (APOBEC3H)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 15129 bases
Position: chr5:110559226-110574354
Accession: NM_001346124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000003115	APOBEC_N	PF08210.11	8.2e-90	1	2
ENSBTAP00000003115	APOBEC_N	PF08210.11	8.2e-90	2	2
ENSBTAP00000055187	APOBEC_N	PF08210.11	6.3e-43	1	1
ENSBTAP00000074510	APOBEC_N	PF08210.11	8.7e-36	1	1
ENSBTAP00000003115	APOBEC_C	PF05240.14	3.5e-63	1	2
ENSBTAP00000003115	APOBEC_C	PF05240.14	3.5e-63	2	2
ENSBTAP00000055187	APOBEC_C	PF05240.14	5.4e-31	1	1
ENSBTAP00000074510	APOBEC_C	PF05240.14	6.1e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000067296	-	893	-	ENSBTAP00000074510	213 (aa)	-	-
ENSBTAT00000003115	-	1682	-	ENSBTAP00000003115	385 (aa)	-	F1MP61
ENSBTAT00000065727	-	941	-	ENSBTAP00000055187	206 (aa)	-	B7T155

Gene Model

Click here to download ENSBTAG00000007755's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000007755's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000007755	APOBEC3H	90	40.571	ENSBTAG00000018849	AICDA	89	40.571
ENSBTAG00000007755	APOBEC3H	73	33.974	ENSBTAG00000014683	APOBEC1	61	33.974
ENSBTAG00000007755	APOBEC3H	93	39.247	ENSBTAG00000037800	-	100	39.247
ENSBTAG00000007755	APOBEC3H	88	30.769	ENSBTAG00000005974	APOBEC2	57	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000007755	APOBEC3H	92	48.889	ENSG00000100298	APOBEC3H	99	48.889	Homo_sapiens
ENSBTAG00000007755	APOBEC3H	91	54.255	ENSAMEG00000010818	-	97	43.897	Ailuropoda_melanoleuca
ENSBTAG00000007755	APOBEC3H	91	49.738	ENSANAG00000025410	APOBEC3H	93	49.738	Aotus_nancymaae
ENSBTAG00000007755	APOBEC3H	93	51.667	ENSCJAG00000012524	APOBEC3H	92	51.667	Callithrix_jacchus
ENSBTAG00000007755	APOBEC3H	94	57.627	ENSCAFG00000001361	APOBEC3Z3	95	57.627	Canis_familiaris
ENSBTAG00000007755	APOBEC3H	94	57.386	ENSCAFG00020002584	-	92	57.386	Canis_lupus_dingo
ENSBTAG00000007755	APOBEC3H	99	89.216	ENSCHIG00000026580	-	98	89.216	Capra_hircus
ENSBTAG00000007755	APOBEC3H	88	52.299	ENSTSYG00000032894	-	100	52.299	Carlito_syrichta
ENSBTAG00000007755	APOBEC3H	92	52.542	ENSCPOG00000009257	-	88	52.542	Cavia_porcellus
ENSBTAG00000007755	APOBEC3H	93	50.273	ENSCCAG00000008525	APOBEC3H	92	50.273	Cebus_capucinus
ENSBTAG00000007755	APOBEC3H	89	51.111	ENSCATG00000030302	APOBEC3H	99	51.111	Cercocebus_atys
ENSBTAG00000007755	APOBEC3H	91	54.286	ENSCLAG00000016615	-	88	53.672	Chinchilla_lanigera
ENSBTAG00000007755	APOBEC3H	94	52.222	ENSCSAG00000006371	APOBEC3H	97	52.222	Chlorocebus_sabaeus
ENSBTAG00000007755	APOBEC3H	94	52.198	ENSCGRG00001022976	Apobec3	90	52.198	Cricetulus_griseus_chok1gshd
ENSBTAG00000007755	APOBEC3H	94	52.198	ENSCGRG00000005621	Apobec3	90	52.198	Cricetulus_griseus_crigri
ENSBTAG00000007755	APOBEC3H	92	49.441	ENSDORG00000027271	-	100	52.041	Dipodomys_ordii
ENSBTAG00000007755	APOBEC3H	99	58.152	ENSECAG00000007726	APOBEC3H	86	58.152	Equus_caballus
ENSBTAG00000007755	APOBEC3H	87	62.011	ENSFCAG00000005251	APOBEC3Z3	100	62.360	Felis_catus
ENSBTAG00000007755	APOBEC3H	94	52.514	ENSSTOG00000007125	-	87	52.514	Ictidomys_tridecemlineatus
ENSBTAG00000007755	APOBEC3H	95	45.455	ENSJJAG00000016840	-	87	45.455	Jaculus_jaculus
ENSBTAG00000007755	APOBEC3H	95	47.645	ENSLAFG00000027404	-	97	51.667	Loxodonta_africana
ENSBTAG00000007755	APOBEC3H	94	52.778	ENSMFAG00000031827	APOBEC3H	99	52.778	Macaca_fascicularis
ENSBTAG00000007755	APOBEC3H	94	51.667	ENSMMUG00000001016	APOBEC3H	99	51.667	Macaca_mulatta
ENSBTAG00000007755	APOBEC3H	94	52.222	ENSMNEG00000039259	APOBEC3H	99	52.222	Macaca_nemestrina
ENSBTAG00000007755	APOBEC3H	94	51.111	ENSMLEG00000033417	APOBEC3H	99	51.111	Mandrillus_leucophaeus
ENSBTAG00000007755	APOBEC3H	99	45.103	ENSMAUG00000011683	Apobec3	94	45.103	Mesocricetus_auratus
ENSBTAG00000007755	APOBEC3H	93	44.054	ENSMOCG00000021576	Apobec3	91	44.118	Microtus_ochrogaster
ENSBTAG00000007755	APOBEC3H	91	47.212	MGP_CAROLIEiJ_G0020029	Apobec3	98	53.012	Mus_caroli
ENSBTAG00000007755	APOBEC3H	91	47.955	ENSMUSG00000009585	Apobec3	98	53.012	Mus_musculus
ENSBTAG00000007755	APOBEC3H	92	46.685	MGP_PahariEiJ_G0020031	-	93	42.893	Mus_pahari
ENSBTAG00000007755	APOBEC3H	94	46.667	MGP_SPRETEiJ_G0020927	Apobec3	98	54.217	Mus_spretus
ENSBTAG00000007755	APOBEC3H	97	52.011	ENSMPUG00000013239	-	97	52.011	Mustela_putorius_furo
ENSBTAG00000007755	APOBEC3H	94	51.264	ENSNGAG00000018998	Apobec3	92	51.264	Nannospalax_galili
ENSBTAG00000007755	APOBEC3H	94	50.000	ENSNLEG00000015218	-	94	50.000	Nomascus_leucogenys
ENSBTAG00000007755	APOBEC3H	97	41.755	ENSOCUG00000023913	-	95	41.111	Oryctolagus_cuniculus
ENSBTAG00000007755	APOBEC3H	97	83.690	ENSOARG00000016290	APOBEC3F	99	83.690	Ovis_aries
ENSBTAG00000007755	APOBEC3H	92	48.333	ENSPPAG00000036522	APOBEC3H	98	48.333	Pan_paniscus
ENSBTAG00000007755	APOBEC3H	96	46.842	ENSPPRG00000003675	-	98	46.842	Panthera_pardus
ENSBTAG00000007755	APOBEC3H	94	62.778	ENSPPRG00000003941	-	95	62.778	Panthera_pardus
ENSBTAG00000007755	APOBEC3H	94	63.128	ENSPTIG00000010283	-	95	63.128	Panthera_tigris_altaica
ENSBTAG00000007755	APOBEC3H	92	48.333	ENSPTRG00000014390	APOBEC3H	98	48.333	Pan_troglodytes
ENSBTAG00000007755	APOBEC3H	94	51.111	ENSPANG00000010774	APOBEC3H	97	51.111	Papio_anubis
ENSBTAG00000007755	APOBEC3H	87	50.000	ENSPEMG00000000456	Apobec3	88	42.636	Peromyscus_maniculatus_bairdii
ENSBTAG00000007755	APOBEC3H	94	48.889	ENSPPYG00000011834	-	94	48.889	Pongo_abelii
ENSBTAG00000007755	APOBEC3H	92	48.295	ENSPCAG00000015655	-	99	48.295	Procavia_capensis
ENSBTAG00000007755	APOBEC3H	66	52.713	ENSPVAG00000024161	-	98	52.713	Pteropus_vampyrus
ENSBTAG00000007755	APOBEC3H	68	52.713	ENSPVAG00000024267	-	99	52.713	Pteropus_vampyrus
ENSBTAG00000007755	APOBEC3H	88	57.386	ENSPVAG00000009462	-	99	57.386	Pteropus_vampyrus
ENSBTAG00000007755	APOBEC3H	94	44.565	ENSRNOG00000016852	Apobec3	91	48.889	Rattus_norvegicus
ENSBTAG00000007755	APOBEC3H	94	51.111	ENSRBIG00000029088	APOBEC3H	99	51.111	Rhinopithecus_bieti
ENSBTAG00000007755	APOBEC3H	94	51.667	ENSRROG00000024699	APOBEC3H	97	51.667	Rhinopithecus_roxellana
ENSBTAG00000007755	APOBEC3H	94	51.648	ENSSBOG00000030005	APOBEC3H	99	52.174	Saimiri_boliviensis_boliviensis
ENSBTAG00000007755	APOBEC3H	96	68.333	ENSSSCG00000000091	APOBEC3B	91	68.333	Sus_scrofa
ENSBTAG00000007755	APOBEC3H	85	54.706	ENSTBEG00000001532	-	99	54.706	Tupaia_belangeri
ENSBTAG00000007755	APOBEC3H	88	74.157	ENSTTRG00000001266	-	100	74.157	Tursiops_truncatus
ENSBTAG00000007755	APOBEC3H	94	55.376	ENSUAMG00000004427	-	85	55.615	Ursus_americanus
ENSBTAG00000007755	APOBEC3H	96	57.143	ENSUMAG00000014435	-	96	57.222	Ursus_maritimus
ENSBTAG00000007755	APOBEC3H	65	63.780	ENSVPAG00000011108	-	100	63.281	Vicugna_pacos
ENSBTAG00000007755	APOBEC3H	86	74.359	ENSVVUG00000014624	-	58	74.359	Vulpes_vulpes