EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000007968 (Gene tree)
Gene ID: 534606
Gene Symbol: RPUSD3
Alias: -
Full Name: Bos taurus RNA pseudouridylate synthase domain containing 3 (RPUSD3)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 7976 bases
Position: chr22:16878874-16886849
Accession: NM_001038561
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000010478	PseudoU_synth_2	PF00849.22	4.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000010478	-	1277	-	ENSBTAP00000010478	344 (aa)	-	F1MN91

Gene Model

Click here to download ENSBTAG00000007968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000007968's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000007968	RPUSD3	80	31.359	ENSBTAG00000020900	RPUSD4	71	32.192

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000007968	RPUSD3	100	81.395	ENSG00000156990	RPUSD3	98	81.395	Homo_sapiens
ENSBTAG00000007968	RPUSD3	100	79.651	ENSAMEG00000016227	RPUSD3	98	79.651	Ailuropoda_melanoleuca
ENSBTAG00000007968	RPUSD3	96	50.149	ENSACAG00000009836	RPUSD3	93	50.149	Anolis_carolinensis
ENSBTAG00000007968	RPUSD3	78	58.571	ENSANAG00000007127	-	96	58.621	Aotus_nancymaae
ENSBTAG00000007968	RPUSD3	55	81.383	ENSANAG00000038118	-	90	81.383	Aotus_nancymaae
ENSBTAG00000007968	RPUSD3	58	80.500	ENSANAG00000019945	-	80	80.500	Aotus_nancymaae
ENSBTAG00000007968	RPUSD3	100	80.523	ENSCAFG00000029733	RPUSD3	98	80.523	Canis_familiaris
ENSBTAG00000007968	RPUSD3	100	80.523	ENSCAFG00020008582	RPUSD3	98	80.523	Canis_lupus_dingo
ENSBTAG00000007968	RPUSD3	100	93.314	ENSCHIG00000026027	RPUSD3	100	93.314	Capra_hircus
ENSBTAG00000007968	RPUSD3	99	74.063	ENSTSYG00000009994	RPUSD3	98	74.063	Carlito_syrichta
ENSBTAG00000007968	RPUSD3	76	79.848	ENSCAPG00000017559	RPUSD3	99	79.848	Cavia_aperea
ENSBTAG00000007968	RPUSD3	89	74.351	ENSCPOG00000037956	RPUSD3	86	74.351	Cavia_porcellus
ENSBTAG00000007968	RPUSD3	100	79.360	ENSCCAG00000029530	RPUSD3	95	82.673	Cebus_capucinus
ENSBTAG00000007968	RPUSD3	100	81.686	ENSCATG00000036939	RPUSD3	98	81.686	Cercocebus_atys
ENSBTAG00000007968	RPUSD3	100	81.105	ENSCSAG00000010506	RPUSD3	98	81.105	Chlorocebus_sabaeus
ENSBTAG00000007968	RPUSD3	51	82.143	ENSCHOG00000010151	-	67	82.143	Choloepus_hoffmanni
ENSBTAG00000007968	RPUSD3	74	53.696	ENSCPBG00000008825	RPUSD3	95	53.307	Chrysemys_picta_bellii
ENSBTAG00000007968	RPUSD3	100	81.105	ENSCANG00000040711	RPUSD3	95	84.158	Colobus_angolensis_palliatus
ENSBTAG00000007968	RPUSD3	100	72.384	ENSCGRG00001004923	Rpusd3	95	72.384	Cricetulus_griseus_chok1gshd
ENSBTAG00000007968	RPUSD3	100	72.384	ENSCGRG00000018315	Rpusd3	100	72.384	Cricetulus_griseus_crigri
ENSBTAG00000007968	RPUSD3	98	77.745	ENSDNOG00000039160	RPUSD3	89	77.745	Dasypus_novemcinctus
ENSBTAG00000007968	RPUSD3	76	75.000	ENSDORG00000026827	Rpusd3	92	75.000	Dipodomys_ordii
ENSBTAG00000007968	RPUSD3	100	70.058	ENSETEG00000006538	RPUSD3	97	70.058	Echinops_telfairi
ENSBTAG00000007968	RPUSD3	59	38.350	ENSEBUG00000015605	RPUSD3	67	38.350	Eptatretus_burgeri
ENSBTAG00000007968	RPUSD3	100	79.942	ENSEASG00005014160	RPUSD3	96	79.942	Equus_asinus_asinus
ENSBTAG00000007968	RPUSD3	100	80.814	ENSECAG00000019988	RPUSD3	96	80.814	Equus_caballus
ENSBTAG00000007968	RPUSD3	96	57.864	ENSEEUG00000007353	RPUSD3	95	57.864	Erinaceus_europaeus
ENSBTAG00000007968	RPUSD3	100	81.395	ENSFCAG00000014199	RPUSD3	98	81.395	Felis_catus
ENSBTAG00000007968	RPUSD3	79	48.529	ENSFALG00000012968	RPUSD3	99	48.529	Ficedula_albicollis
ENSBTAG00000007968	RPUSD3	76	80.843	ENSFDAG00000008350	RPUSD3	80	80.843	Fukomys_damarensis
ENSBTAG00000007968	RPUSD3	76	55.133	ENSGAGG00000007493	RPUSD3	82	54.753	Gopherus_agassizii
ENSBTAG00000007968	RPUSD3	100	81.395	ENSGGOG00000013120	RPUSD3	95	84.653	Gorilla_gorilla
ENSBTAG00000007968	RPUSD3	85	78.425	ENSHGLG00000011722	RPUSD3	74	78.425	Heterocephalus_glaber_female
ENSBTAG00000007968	RPUSD3	85	78.425	ENSHGLG00100016038	RPUSD3	74	78.425	Heterocephalus_glaber_male
ENSBTAG00000007968	RPUSD3	100	76.163	ENSSTOG00000002125	RPUSD3	98	76.163	Ictidomys_tridecemlineatus
ENSBTAG00000007968	RPUSD3	100	70.930	ENSJJAG00000012679	Rpusd3	100	70.930	Jaculus_jaculus
ENSBTAG00000007968	RPUSD3	100	79.070	ENSLAFG00000017501	RPUSD3	100	79.070	Loxodonta_africana
ENSBTAG00000007968	RPUSD3	100	81.395	ENSMFAG00000032407	RPUSD3	98	81.395	Macaca_fascicularis
ENSBTAG00000007968	RPUSD3	100	77.326	ENSMMUG00000010628	RPUSD3	97	84.615	Macaca_mulatta
ENSBTAG00000007968	RPUSD3	100	81.105	ENSMNEG00000040308	RPUSD3	98	81.105	Macaca_nemestrina
ENSBTAG00000007968	RPUSD3	100	81.686	ENSMLEG00000033940	RPUSD3	98	81.686	Mandrillus_leucophaeus
ENSBTAG00000007968	RPUSD3	100	72.384	ENSMAUG00000015473	Rpusd3	100	72.384	Mesocricetus_auratus
ENSBTAG00000007968	RPUSD3	100	76.163	ENSMICG00000002315	RPUSD3	100	76.163	Microcebus_murinus
ENSBTAG00000007968	RPUSD3	99	73.021	ENSMOCG00000022613	Rpusd3	99	73.021	Microtus_ochrogaster
ENSBTAG00000007968	RPUSD3	96	54.683	ENSMODG00000005210	RPUSD3	86	54.545	Monodelphis_domestica
ENSBTAG00000007968	RPUSD3	100	71.802	MGP_CAROLIEiJ_G0028725	Rpusd3	100	71.802	Mus_caroli
ENSBTAG00000007968	RPUSD3	100	72.674	ENSMUSG00000051169	Rpusd3	100	72.674	Mus_musculus
ENSBTAG00000007968	RPUSD3	100	72.674	MGP_PahariEiJ_G0022476	Rpusd3	100	72.674	Mus_pahari
ENSBTAG00000007968	RPUSD3	100	71.802	MGP_SPRETEiJ_G0029753	Rpusd3	100	71.802	Mus_spretus
ENSBTAG00000007968	RPUSD3	100	77.907	ENSMPUG00000017132	RPUSD3	98	77.907	Mustela_putorius_furo
ENSBTAG00000007968	RPUSD3	100	80.523	ENSMLUG00000006135	RPUSD3	99	80.523	Myotis_lucifugus
ENSBTAG00000007968	RPUSD3	99	73.021	ENSNGAG00000023704	Rpusd3	99	73.021	Nannospalax_galili
ENSBTAG00000007968	RPUSD3	100	67.442	ENSNLEG00000004214	RPUSD3	95	84.158	Nomascus_leucogenys
ENSBTAG00000007968	RPUSD3	76	63.602	ENSMEUG00000013098	-	100	63.602	Notamacropus_eugenii
ENSBTAG00000007968	RPUSD3	97	61.446	ENSOPRG00000002300	RPUSD3	95	61.446	Ochotona_princeps
ENSBTAG00000007968	RPUSD3	77	77.652	ENSODEG00000018137	RPUSD3	91	77.652	Octodon_degus
ENSBTAG00000007968	RPUSD3	83	48.252	ENSOANG00000012081	-	99	48.252	Ornithorhynchus_anatinus
ENSBTAG00000007968	RPUSD3	100	67.806	ENSOCUG00000027885	RPUSD3	100	67.806	Oryctolagus_cuniculus
ENSBTAG00000007968	RPUSD3	91	81.210	ENSOGAG00000012592	RPUSD3	100	81.210	Otolemur_garnettii
ENSBTAG00000007968	RPUSD3	100	96.221	ENSOARG00000005928	RPUSD3	98	96.221	Ovis_aries
ENSBTAG00000007968	RPUSD3	100	80.814	ENSPPAG00000038083	RPUSD3	95	84.158	Pan_paniscus
ENSBTAG00000007968	RPUSD3	100	80.814	ENSPPRG00000024433	RPUSD3	98	80.814	Panthera_pardus
ENSBTAG00000007968	RPUSD3	100	81.977	ENSPTIG00000006828	RPUSD3	100	81.977	Panthera_tigris_altaica
ENSBTAG00000007968	RPUSD3	100	80.523	ENSPTRG00000051760	RPUSD3	95	83.663	Pan_troglodytes
ENSBTAG00000007968	RPUSD3	100	82.267	ENSPANG00000023885	RPUSD3	98	82.267	Papio_anubis
ENSBTAG00000007968	RPUSD3	100	73.547	ENSPEMG00000017245	Rpusd3	100	73.547	Peromyscus_maniculatus_bairdii
ENSBTAG00000007968	RPUSD3	97	58.133	ENSPCIG00000021901	RPUSD3	94	57.057	Phascolarctos_cinereus
ENSBTAG00000007968	RPUSD3	100	81.686	ENSPPYG00000013676	RPUSD3	98	81.686	Pongo_abelii
ENSBTAG00000007968	RPUSD3	78	63.060	ENSPCAG00000013731	-	93	63.060	Procavia_capensis
ENSBTAG00000007968	RPUSD3	100	81.105	ENSPCOG00000018314	RPUSD3	98	81.105	Propithecus_coquereli
ENSBTAG00000007968	RPUSD3	100	79.942	ENSPVAG00000011107	RPUSD3	98	79.942	Pteropus_vampyrus
ENSBTAG00000007968	RPUSD3	100	68.023	ENSRNOG00000009084	Rpusd3	100	68.023	Rattus_norvegicus
ENSBTAG00000007968	RPUSD3	99	81.871	ENSRBIG00000041230	RPUSD3	95	84.653	Rhinopithecus_bieti
ENSBTAG00000007968	RPUSD3	99	81.871	ENSRROG00000043328	RPUSD3	95	84.653	Rhinopithecus_roxellana
ENSBTAG00000007968	RPUSD3	100	79.070	ENSSBOG00000036106	RPUSD3	98	79.070	Saimiri_boliviensis_boliviensis
ENSBTAG00000007968	RPUSD3	90	58.117	ENSSHAG00000015536	RPUSD3	99	57.792	Sarcophilus_harrisii
ENSBTAG00000007968	RPUSD3	100	80.814	ENSSSCG00000011555	RPUSD3	98	80.814	Sus_scrofa
ENSBTAG00000007968	RPUSD3	63	50.691	ENSTGUG00000008744	RPUSD3	93	50.691	Taeniopygia_guttata
ENSBTAG00000007968	RPUSD3	82	77.224	ENSTBEG00000000176	RPUSD3	97	77.224	Tupaia_belangeri
ENSBTAG00000007968	RPUSD3	100	85.174	ENSTTRG00000007544	RPUSD3	98	85.174	Tursiops_truncatus
ENSBTAG00000007968	RPUSD3	91	81.529	ENSUAMG00000011354	RPUSD3	98	81.529	Ursus_americanus
ENSBTAG00000007968	RPUSD3	100	79.651	ENSUMAG00000018830	RPUSD3	98	79.651	Ursus_maritimus
ENSBTAG00000007968	RPUSD3	100	80.233	ENSVVUG00000023735	RPUSD3	100	80.233	Vulpes_vulpes
ENSBTAG00000007968	RPUSD3	81	49.291	ENSXETG00000023546	rpusd3	99	49.291	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005759	mitochondrial matrix	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0070131	positive regulation of mitochondrial translation	-	ISS	Process