EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000008003 (Gene tree)
Gene ID: 537131
Gene Symbol: SMG7
Alias: -
Full Name: Bos taurus SMG7%2C nonsense mediated mRNA decay factor (SMG7)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 86180 bases
Position: chr16:64518478-64604657
Accession: NM_001193205
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000033867	EST1	PF10374.9	9.3e-25	1	1
ENSBTAP00000066008	EST1	PF10374.9	9.7e-25	1	1
ENSBTAP00000033867	EST1_DNA_bind	PF10373.9	2.3e-55	1	1
ENSBTAP00000066008	EST1_DNA_bind	PF10373.9	2.4e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000077210	-	3961	-	ENSBTAP00000066008	1170 (aa)	XP_010811828	UPI000383D61A
ENSBTAT00000033964	-	5864	XM_015475257	ENSBTAP00000033867	1137 (aa)	XP_015330743	F1N4M5

Gene Model

Click here to download ENSBTAG00000008003's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000008003's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000008003	SMG7	100	96.410	ENSG00000116698	SMG7	100	99.333	Homo_sapiens
ENSBTAG00000008003	SMG7	89	73.952	ENSAPOG00000009611	smg7	95	74.584	Acanthochromis_polyacanthus
ENSBTAG00000008003	SMG7	99	96.280	ENSAMEG00000002357	SMG7	99	96.280	Ailuropoda_melanoleuca
ENSBTAG00000008003	SMG7	83	70.851	ENSACIG00000015152	smg7	100	64.795	Amphilophus_citrinellus
ENSBTAG00000008003	SMG7	97	62.273	ENSAOCG00000013538	smg7	99	66.581	Amphiprion_ocellaris
ENSBTAG00000008003	SMG7	97	62.140	ENSAPEG00000007851	smg7	99	66.439	Amphiprion_percula
ENSBTAG00000008003	SMG7	99	65.620	ENSATEG00000006931	smg7	99	65.789	Anabas_testudineus
ENSBTAG00000008003	SMG7	100	87.927	ENSAPLG00000015811	SMG7	100	87.752	Anas_platyrhynchos
ENSBTAG00000008003	SMG7	100	82.038	ENSACAG00000014989	SMG7	99	83.684	Anolis_carolinensis
ENSBTAG00000008003	SMG7	100	95.690	ENSANAG00000028114	SMG7	100	95.690	Aotus_nancymaae
ENSBTAG00000008003	SMG7	99	65.506	ENSACLG00000022079	smg7	99	66.667	Astatotilapia_calliptera
ENSBTAG00000008003	SMG7	99	67.739	ENSAMXG00000020809	smg7	99	67.565	Astyanax_mexicanus
ENSBTAG00000008003	SMG7	100	95.778	ENSCJAG00000005135	SMG7	100	96.055	Callithrix_jacchus
ENSBTAG00000008003	SMG7	100	97.009	ENSCAFG00000013276	SMG7	100	97.009	Canis_familiaris
ENSBTAG00000008003	SMG7	100	97.009	ENSCAFG00020015475	SMG7	100	97.009	Canis_lupus_dingo
ENSBTAG00000008003	SMG7	97	98.853	ENSCHIG00000018192	SMG7	99	98.853	Capra_hircus
ENSBTAG00000008003	SMG7	100	95.385	ENSTSYG00000002667	SMG7	100	95.385	Carlito_syrichta
ENSBTAG00000008003	SMG7	99	95.283	ENSCPOG00000008906	SMG7	100	95.197	Cavia_porcellus
ENSBTAG00000008003	SMG7	100	95.866	ENSCCAG00000028596	SMG7	100	95.866	Cebus_capucinus
ENSBTAG00000008003	SMG7	100	96.581	ENSCATG00000011063	SMG7	100	96.581	Cercocebus_atys
ENSBTAG00000008003	SMG7	100	95.897	ENSCLAG00000010751	SMG7	100	95.897	Chinchilla_lanigera
ENSBTAG00000008003	SMG7	100	96.581	ENSCSAG00000012654	SMG7	100	96.581	Chlorocebus_sabaeus
ENSBTAG00000008003	SMG7	89	87.584	ENSCHOG00000010522	SMG7	93	87.870	Choloepus_hoffmanni
ENSBTAG00000008003	SMG7	100	90.359	ENSCPBG00000015724	SMG7	100	90.184	Chrysemys_picta_bellii
ENSBTAG00000008003	SMG7	99	96.188	ENSCANG00000015680	SMG7	99	96.188	Colobus_angolensis_palliatus
ENSBTAG00000008003	SMG7	100	93.931	ENSCGRG00001013705	Smg7	100	94.854	Cricetulus_griseus_chok1gshd
ENSBTAG00000008003	SMG7	99	93.878	ENSCGRG00000018401	Smg7	100	94.778	Cricetulus_griseus_crigri
ENSBTAG00000008003	SMG7	93	69.500	ENSCVAG00000011842	smg7	100	69.500	Cyprinodon_variegatus
ENSBTAG00000008003	SMG7	99	67.070	ENSDARG00000060767	smg7	99	67.156	Danio_rerio
ENSBTAG00000008003	SMG7	98	95.126	ENSDORG00000007331	Smg7	100	95.126	Dipodomys_ordii
ENSBTAG00000008003	SMG7	94	94.708	ENSETEG00000002654	SMG7	99	94.708	Echinops_telfairi
ENSBTAG00000008003	SMG7	100	97.179	ENSEASG00005006524	SMG7	100	97.179	Equus_asinus_asinus
ENSBTAG00000008003	SMG7	100	97.265	ENSECAG00000004313	SMG7	100	97.265	Equus_caballus
ENSBTAG00000008003	SMG7	93	96.587	ENSEEUG00000002024	SMG7	92	96.587	Erinaceus_europaeus
ENSBTAG00000008003	SMG7	90	76.923	ENSELUG00000010293	smg7	99	65.340	Esox_lucius
ENSBTAG00000008003	SMG7	99	97.348	ENSFCAG00000010900	SMG7	100	97.348	Felis_catus
ENSBTAG00000008003	SMG7	98	81.090	ENSFALG00000003047	SMG7	100	82.283	Ficedula_albicollis
ENSBTAG00000008003	SMG7	97	95.756	ENSFDAG00000012121	SMG7	99	95.633	Fukomys_damarensis
ENSBTAG00000008003	SMG7	99	64.524	ENSFHEG00000011073	smg7	99	64.524	Fundulus_heteroclitus
ENSBTAG00000008003	SMG7	87	67.006	ENSGMOG00000004916	smg7	92	67.006	Gadus_morhua
ENSBTAG00000008003	SMG7	100	88.287	ENSGALG00000004667	SMG7	100	88.112	Gallus_gallus
ENSBTAG00000008003	SMG7	99	64.322	ENSGAFG00000019000	smg7	99	63.567	Gambusia_affinis
ENSBTAG00000008003	SMG7	97	62.973	ENSGACG00000001634	smg7	99	64.943	Gasterosteus_aculeatus
ENSBTAG00000008003	SMG7	100	96.410	ENSGGOG00000002342	SMG7	100	96.410	Gorilla_gorilla
ENSBTAG00000008003	SMG7	99	64.974	ENSHBUG00000003726	smg7	97	74.112	Haplochromis_burtoni
ENSBTAG00000008003	SMG7	100	95.339	ENSHGLG00000009353	SMG7	100	95.811	Heterocephalus_glaber_female
ENSBTAG00000008003	SMG7	97	87.908	ENSHGLG00100004878	-	99	87.908	Heterocephalus_glaber_male
ENSBTAG00000008003	SMG7	100	95.427	ENSHGLG00100009637	-	100	95.427	Heterocephalus_glaber_male
ENSBTAG00000008003	SMG7	99	68.325	ENSIPUG00000016997	smg7	99	68.325	Ictalurus_punctatus
ENSBTAG00000008003	SMG7	98	96.432	ENSSTOG00000000401	SMG7	100	96.432	Ictidomys_tridecemlineatus
ENSBTAG00000008003	SMG7	97	94.616	ENSJJAG00000012351	Smg7	99	94.616	Jaculus_jaculus
ENSBTAG00000008003	SMG7	97	62.248	ENSKMAG00000004900	smg7	100	62.511	Kryptolebias_marmoratus
ENSBTAG00000008003	SMG7	99	65.464	ENSLBEG00000002983	smg7	99	65.574	Labrus_bergylta
ENSBTAG00000008003	SMG7	52	62.167	ENSLBEG00000005220	-	75	64.098	Labrus_bergylta
ENSBTAG00000008003	SMG7	99	74.913	ENSLACG00000000972	SMG7	99	75.239	Latimeria_chalumnae
ENSBTAG00000008003	SMG7	99	66.169	ENSLOCG00000002010	smg7	99	67.224	Lepisosteus_oculatus
ENSBTAG00000008003	SMG7	98	96.258	ENSLAFG00000008186	SMG7	100	96.258	Loxodonta_africana
ENSBTAG00000008003	SMG7	100	96.496	ENSMFAG00000031653	SMG7	100	96.496	Macaca_fascicularis
ENSBTAG00000008003	SMG7	100	96.581	ENSMMUG00000018458	SMG7	100	96.581	Macaca_mulatta
ENSBTAG00000008003	SMG7	100	96.306	ENSMNEG00000034798	SMG7	100	96.306	Macaca_nemestrina
ENSBTAG00000008003	SMG7	100	96.581	ENSMLEG00000037170	SMG7	100	96.581	Mandrillus_leucophaeus
ENSBTAG00000008003	SMG7	88	65.340	ENSMAMG00000018733	smg7	84	67.797	Mastacembelus_armatus
ENSBTAG00000008003	SMG7	99	65.787	ENSMZEG00005015247	smg7	99	66.581	Maylandia_zebra
ENSBTAG00000008003	SMG7	99	88.251	ENSMGAG00000001561	SMG7	99	88.074	Meleagris_gallopavo
ENSBTAG00000008003	SMG7	100	94.195	ENSMAUG00000019484	Smg7	100	95.213	Mesocricetus_auratus
ENSBTAG00000008003	SMG7	100	96.130	ENSMICG00000007145	SMG7	100	96.432	Microcebus_murinus
ENSBTAG00000008003	SMG7	100	94.371	ENSMOCG00000020748	Smg7	100	95.387	Microtus_ochrogaster
ENSBTAG00000008003	SMG7	99	64.385	ENSMMOG00000001524	smg7	99	64.639	Mola_mola
ENSBTAG00000008003	SMG7	92	91.935	ENSMODG00000007139	SMG7	99	91.935	Monodelphis_domestica
ENSBTAG00000008003	SMG7	99	65.378	ENSMALG00000000061	smg7	94	68.159	Monopterus_albus
ENSBTAG00000008003	SMG7	100	94.019	MGP_CAROLIEiJ_G0014704	Smg7	100	93.995	Mus_caroli
ENSBTAG00000008003	SMG7	100	93.931	ENSMUSG00000042772	Smg7	100	94.778	Mus_musculus
ENSBTAG00000008003	SMG7	100	94.195	MGP_PahariEiJ_G0027940	Smg7	100	94.952	Mus_pahari
ENSBTAG00000008003	SMG7	100	94.019	MGP_SPRETEiJ_G0015511	Smg7	100	94.865	Mus_spretus
ENSBTAG00000008003	SMG7	96	96.970	ENSMPUG00000011732	SMG7	97	96.970	Mustela_putorius_furo
ENSBTAG00000008003	SMG7	97	96.205	ENSMLUG00000015417	SMG7	99	96.205	Myotis_lucifugus
ENSBTAG00000008003	SMG7	100	94.459	ENSNGAG00000009836	Smg7	100	94.778	Nannospalax_galili
ENSBTAG00000008003	SMG7	98	61.478	ENSNBRG00000024343	smg7	98	71.905	Neolamprologus_brichardi
ENSBTAG00000008003	SMG7	100	96.667	ENSNLEG00000018018	SMG7	100	96.667	Nomascus_leucogenys
ENSBTAG00000008003	SMG7	70	91.463	ENSMEUG00000004681	SMG7	73	91.463	Notamacropus_eugenii
ENSBTAG00000008003	SMG7	94	84.932	ENSOPRG00000013942	SMG7	96	84.658	Ochotona_princeps
ENSBTAG00000008003	SMG7	100	94.987	ENSODEG00000010390	SMG7	100	95.474	Octodon_degus
ENSBTAG00000008003	SMG7	99	65.114	ENSONIG00000000277	smg7	99	66.267	Oreochromis_niloticus
ENSBTAG00000008003	SMG7	96	90.160	ENSOANG00000000994	SMG7	100	90.426	Ornithorhynchus_anatinus
ENSBTAG00000008003	SMG7	100	89.573	ENSOCUG00000005887	SMG7	95	89.744	Oryctolagus_cuniculus
ENSBTAG00000008003	SMG7	99	63.330	ENSORLG00000007314	smg7	70	92.763	Oryzias_latipes
ENSBTAG00000008003	SMG7	99	63.676	ENSORLG00020015779	smg7	99	63.848	Oryzias_latipes_hni
ENSBTAG00000008003	SMG7	99	64.230	ENSORLG00015012289	smg7	99	63.543	Oryzias_latipes_hsok
ENSBTAG00000008003	SMG7	99	61.718	ENSOMEG00000002328	smg7	99	62.438	Oryzias_melastigma
ENSBTAG00000008003	SMG7	94	94.891	ENSOGAG00000003107	SMG7	93	94.799	Otolemur_garnettii
ENSBTAG00000008003	SMG7	100	98.889	ENSOARG00000001352	SMG7	100	98.889	Ovis_aries
ENSBTAG00000008003	SMG7	100	96.306	ENSPPAG00000031619	SMG7	100	96.306	Pan_paniscus
ENSBTAG00000008003	SMG7	100	97.098	ENSPPRG00000011222	SMG7	100	97.519	Panthera_pardus
ENSBTAG00000008003	SMG7	94	97.263	ENSPTIG00000007242	SMG7	100	93.450	Panthera_tigris_altaica
ENSBTAG00000008003	SMG7	100	96.306	ENSPTRG00000001764	SMG7	100	96.306	Pan_troglodytes
ENSBTAG00000008003	SMG7	100	96.581	ENSPANG00000004520	SMG7	100	96.581	Papio_anubis
ENSBTAG00000008003	SMG7	99	64.179	ENSPKIG00000007242	smg7	99	68.000	Paramormyrops_kingsleyae
ENSBTAG00000008003	SMG7	97	90.501	ENSPSIG00000012201	SMG7	99	90.237	Pelodiscus_sinensis
ENSBTAG00000008003	SMG7	71	43.298	ENSPMGG00000021833	smg7	89	54.000	Periophthalmus_magnuspinnatus
ENSBTAG00000008003	SMG7	98	94.430	ENSPEMG00000011315	Smg7	100	94.430	Peromyscus_maniculatus_bairdii
ENSBTAG00000008003	SMG7	100	92.267	ENSPCIG00000003786	SMG7	100	92.091	Phascolarctos_cinereus
ENSBTAG00000008003	SMG7	99	61.709	ENSPFOG00000019219	smg7	99	62.881	Poecilia_formosa
ENSBTAG00000008003	SMG7	99	64.524	ENSPLAG00000001446	smg7	99	64.610	Poecilia_latipinna
ENSBTAG00000008003	SMG7	96	63.717	ENSPMEG00000005218	smg7	99	63.805	Poecilia_mexicana
ENSBTAG00000008003	SMG7	87	61.357	ENSPREG00000019039	smg7	91	61.259	Poecilia_reticulata
ENSBTAG00000008003	SMG7	100	96.394	ENSPPYG00000000427	SMG7	100	96.394	Pongo_abelii
ENSBTAG00000008003	SMG7	93	84.594	ENSPCAG00000008360	SMG7	94	84.594	Procavia_capensis
ENSBTAG00000008003	SMG7	100	96.410	ENSPCOG00000011996	SMG7	100	96.410	Propithecus_coquereli
ENSBTAG00000008003	SMG7	89	91.058	ENSPVAG00000000851	SMG7	89	91.058	Pteropus_vampyrus
ENSBTAG00000008003	SMG7	99	66.093	ENSPNYG00000007643	smg7	99	66.523	Pundamilia_nyererei
ENSBTAG00000008003	SMG7	99	68.111	ENSPNAG00000011374	smg7	98	69.192	Pygocentrus_nattereri
ENSBTAG00000008003	SMG7	100	94.025	ENSRNOG00000027962	Smg7	100	94.974	Rattus_norvegicus
ENSBTAG00000008003	SMG7	100	96.496	ENSRBIG00000036316	SMG7	100	96.496	Rhinopithecus_bieti
ENSBTAG00000008003	SMG7	100	96.496	ENSRROG00000035719	SMG7	100	96.496	Rhinopithecus_roxellana
ENSBTAG00000008003	SMG7	97	96.117	ENSSBOG00000023454	SMG7	99	96.117	Saimiri_boliviensis_boliviensis
ENSBTAG00000008003	SMG7	100	91.835	ENSSHAG00000013147	SMG7	100	91.572	Sarcophilus_harrisii
ENSBTAG00000008003	SMG7	99	68.614	ENSSFOG00015017252	smg7	99	75.789	Scleropages_formosus
ENSBTAG00000008003	SMG7	99	65.746	ENSSMAG00000006067	smg7	99	65.891	Scophthalmus_maximus
ENSBTAG00000008003	SMG7	93	71.627	ENSSDUG00000017543	smg7	99	65.511	Seriola_dumerili
ENSBTAG00000008003	SMG7	99	88.604	ENSSPUG00000002064	SMG7	99	88.428	Sphenodon_punctatus
ENSBTAG00000008003	SMG7	100	65.571	ENSSPAG00000008733	smg7	100	65.571	Stegastes_partitus
ENSBTAG00000008003	SMG7	100	97.265	ENSSSCG00000015558	SMG7	100	97.265	Sus_scrofa
ENSBTAG00000008003	SMG7	99	88.106	ENSTGUG00000003928	SMG7	100	88.018	Taeniopygia_guttata
ENSBTAG00000008003	SMG7	97	63.202	ENSTNIG00000002802	smg7	99	63.291	Tetraodon_nigroviridis
ENSBTAG00000008003	SMG7	75	96.186	ENSTBEG00000003220	SMG7	75	96.186	Tupaia_belangeri
ENSBTAG00000008003	SMG7	94	97.352	ENSTTRG00000014778	SMG7	94	97.352	Tursiops_truncatus
ENSBTAG00000008003	SMG7	96	92.877	ENSUAMG00000017473	SMG7	100	92.877	Ursus_americanus
ENSBTAG00000008003	SMG7	94	96.997	ENSUMAG00000016389	SMG7	100	96.997	Ursus_maritimus
ENSBTAG00000008003	SMG7	100	97.094	ENSVVUG00000008976	SMG7	100	97.094	Vulpes_vulpes
ENSBTAG00000008003	SMG7	100	70.837	ENSXETG00000012528	smg7	100	70.598	Xenopus_tropicalis
ENSBTAG00000008003	SMG7	99	64.464	ENSXMAG00000007123	smg7	99	64.635	Xiphophorus_maculatus