EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000008135 (Gene tree)
Gene ID: 613614
Gene Symbol: SLIRP
Alias: -
Full Name: Bos taurus SRA stem-loop interacting RNA binding protein (SLIRP)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 6975 bases
Position: chr10:88846597-88853571
Accession: NM_001037485
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000040631	RRM_1	PF00076.22	3.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000043035	-	390	-	ENSBTAP00000040631	111 (aa)	-	Q32P59

Gene Model

Click here to download ENSBTAG00000008135's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000008135's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000008135	SLIRP	92	88.235	ENSBTAG00000050457	-	98	89.000
ENSBTAG00000008135	SLIRP	86	30.864	ENSBTAG00000013627	HNRNPAB	55	30.864

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000008135	SLIRP	90	85.000	ENSCAFG00000017230	SLIRP	100	86.486	Canis_familiaris
ENSBTAG00000008135	SLIRP	90	85.000	ENSCAFG00020000852	-	100	86.486	Canis_lupus_dingo
ENSBTAG00000008135	SLIRP	100	96.396	ENSCHIG00000019077	-	100	96.396	Capra_hircus
ENSBTAG00000008135	SLIRP	100	86.486	ENSCHIG00000002964	-	90	88.000	Capra_hircus
ENSBTAG00000008135	SLIRP	100	81.081	ENSCPOG00000001500	-	90	81.000	Cavia_porcellus
ENSBTAG00000008135	SLIRP	100	80.180	ENSCLAG00000008545	-	90	80.000	Chinchilla_lanigera
ENSBTAG00000008135	SLIRP	81	65.556	ENSDNOG00000041397	-	82	65.556	Dasypus_novemcinctus
ENSBTAG00000008135	SLIRP	100	91.892	ENSECAG00000000712	SLIRP	90	92.000	Equus_caballus
ENSBTAG00000008135	SLIRP	89	79.798	ENSJJAG00000018723	-	100	77.477	Jaculus_jaculus
ENSBTAG00000008135	SLIRP	100	78.378	MGP_PahariEiJ_G0029754	-	90	80.000	Mus_pahari
ENSBTAG00000008135	SLIRP	90	83.000	ENSMLUG00000022403	-	100	81.982	Myotis_lucifugus
ENSBTAG00000008135	SLIRP	100	78.378	ENSOPRG00000007560	-	90	80.000	Ochotona_princeps
ENSBTAG00000008135	SLIRP	100	86.486	ENSOCUG00000009713	-	90	88.000	Oryctolagus_cuniculus
ENSBTAG00000008135	SLIRP	90	66.000	ENSOGAG00000027580	-	99	66.667	Otolemur_garnettii
ENSBTAG00000008135	SLIRP	90	96.000	ENSOARG00000002642	SLIRP	100	95.495	Ovis_aries
ENSBTAG00000008135	SLIRP	100	73.874	ENSOARG00000016139	-	90	75.000	Ovis_aries
ENSBTAG00000008135	SLIRP	86	63.542	ENSPCAG00000004290	-	100	63.964	Procavia_capensis
ENSBTAG00000008135	SLIRP	70	83.333	ENSPVAG00000006420	-	70	83.333	Pteropus_vampyrus
ENSBTAG00000008135	SLIRP	100	78.378	ENSRNOG00000012314	Slirp	90	80.000	Rattus_norvegicus
ENSBTAG00000008135	SLIRP	100	84.685	ENSTBEG00000013979	-	90	86.000	Tupaia_belangeri
ENSBTAG00000008135	SLIRP	70	92.308	ENSTTRG00000009328	-	90	76.000	Tursiops_truncatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component