EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000008251 (Gene tree)
Gene ID: 780877
Gene Symbol: SNRPN
Alias: -
Full Name: Bos taurus small nuclear ribonucleoprotein polypeptide N (SNRPN)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 23391 bases
Position: chr21:1937647-1961037
Accession: NM_001079797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000010856	LSM	PF01423.22	9.2e-20	1	1
ENSBTAP00000073157	LSM	PF01423.22	1.3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000072712	-	1328	-	ENSBTAP00000073157	222 (aa)	-	-
ENSBTAT00000010856	-	1308	-	ENSBTAP00000010856	240 (aa)	-	Q17QN3

Gene Model

Click here to download ENSBTAG00000008251's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000008251's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000008251	SNRPN	96	91.080	ENSBTAG00000001038	SNRPB	96	91.403

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000008251	SNRPN	100	98.750	ENSG00000128739	SNRPN	100	100.000	Homo_sapiens
ENSBTAG00000008251	SNRPN	99	99.163	ENSAMEG00000007034	SNRPN	98	99.163	Ailuropoda_melanoleuca
ENSBTAG00000008251	SNRPN	100	98.750	ENSANAG00000034241	SNRPN	100	98.750	Aotus_nancymaae
ENSBTAG00000008251	SNRPN	100	98.750	ENSCJAG00000003759	-	100	98.750	Callithrix_jacchus
ENSBTAG00000008251	SNRPN	100	97.297	ENSCJAG00000042622	-	95	98.246	Callithrix_jacchus
ENSBTAG00000008251	SNRPN	100	99.167	ENSCAFG00000010127	SNRPN	100	99.167	Canis_familiaris
ENSBTAG00000008251	SNRPN	100	99.167	ENSCAFG00020024075	SNRPN	100	99.167	Canis_lupus_dingo
ENSBTAG00000008251	SNRPN	100	100.000	ENSCHIG00000017477	SNRPN	100	100.000	Capra_hircus
ENSBTAG00000008251	SNRPN	100	98.750	ENSTSYG00000005248	SNRPN	100	98.750	Carlito_syrichta
ENSBTAG00000008251	SNRPN	100	98.750	ENSCAPG00000003047	SNRPN	100	98.750	Cavia_aperea
ENSBTAG00000008251	SNRPN	100	98.750	ENSCPOG00000020270	SNRPN	100	98.750	Cavia_porcellus
ENSBTAG00000008251	SNRPN	100	98.750	ENSCCAG00000024231	SNRPN	100	98.750	Cebus_capucinus
ENSBTAG00000008251	SNRPN	100	98.750	ENSCATG00000032518	SNRPN	100	98.750	Cercocebus_atys
ENSBTAG00000008251	SNRPN	100	98.750	ENSCLAG00000011376	SNRPN	100	98.750	Chinchilla_lanigera
ENSBTAG00000008251	SNRPN	100	98.750	ENSCSAG00000006406	SNRPN	100	98.750	Chlorocebus_sabaeus
ENSBTAG00000008251	SNRPN	99	98.190	ENSCHOG00000001846	SNRPN	88	98.291	Choloepus_hoffmanni
ENSBTAG00000008251	SNRPN	100	98.750	ENSCANG00000041156	SNRPN	100	98.750	Colobus_angolensis_palliatus
ENSBTAG00000008251	SNRPN	100	98.333	ENSCGRG00001004136	Snrpn	100	98.333	Cricetulus_griseus_chok1gshd
ENSBTAG00000008251	SNRPN	100	98.333	ENSCGRG00000001621	Snrpn	100	98.333	Cricetulus_griseus_crigri
ENSBTAG00000008251	SNRPN	74	92.121	ENSCVAG00000014193	SNRPN	75	90.710	Cyprinodon_variegatus
ENSBTAG00000008251	SNRPN	99	97.908	ENSDNOG00000037060	SNRPN	98	97.908	Dasypus_novemcinctus
ENSBTAG00000008251	SNRPN	100	99.167	ENSDORG00000004527	Snrpn	100	99.167	Dipodomys_ordii
ENSBTAG00000008251	SNRPN	100	99.167	ENSEASG00005017871	SNRPN	100	99.167	Equus_asinus_asinus
ENSBTAG00000008251	SNRPN	100	99.167	ENSECAG00000018148	SNRPN	100	99.167	Equus_caballus
ENSBTAG00000008251	SNRPN	99	99.095	ENSEEUG00000007440	-	100	98.745	Erinaceus_europaeus
ENSBTAG00000008251	SNRPN	100	99.167	ENSFCAG00000022298	-	100	99.167	Felis_catus
ENSBTAG00000008251	SNRPN	100	99.167	ENSFDAG00000016578	-	100	99.167	Fukomys_damarensis
ENSBTAG00000008251	SNRPN	82	86.339	ENSFDAG00000010528	-	86	86.339	Fukomys_damarensis
ENSBTAG00000008251	SNRPN	78	75.145	ENSGMOG00000018161	SNRPN	93	75.587	Gadus_morhua
ENSBTAG00000008251	SNRPN	97	72.093	ENSGGOG00000024469	-	93	73.659	Gorilla_gorilla
ENSBTAG00000008251	SNRPN	100	98.750	ENSGGOG00000003988	SNRPN	100	98.750	Gorilla_gorilla
ENSBTAG00000008251	SNRPN	92	88.780	ENSHGLG00000019812	-	89	89.671	Heterocephalus_glaber_female
ENSBTAG00000008251	SNRPN	100	98.750	ENSHGLG00000011924	SNRPN	100	98.750	Heterocephalus_glaber_female
ENSBTAG00000008251	SNRPN	93	79.710	ENSHGLG00000020936	-	75	81.250	Heterocephalus_glaber_female
ENSBTAG00000008251	SNRPN	100	84.167	ENSHGLG00000002327	-	92	84.163	Heterocephalus_glaber_female
ENSBTAG00000008251	SNRPN	100	81.667	ENSHGLG00100004881	-	92	82.353	Heterocephalus_glaber_male
ENSBTAG00000008251	SNRPN	92	88.780	ENSHGLG00100021056	-	89	89.671	Heterocephalus_glaber_male
ENSBTAG00000008251	SNRPN	100	98.750	ENSHGLG00100016559	SNRPN	100	98.750	Heterocephalus_glaber_male
ENSBTAG00000008251	SNRPN	100	98.750	ENSSTOG00000001339	SNRPN	100	98.750	Ictidomys_tridecemlineatus
ENSBTAG00000008251	SNRPN	99	99.163	ENSLAFG00000009458	SNRPN	99	99.163	Loxodonta_africana
ENSBTAG00000008251	SNRPN	100	98.750	ENSMFAG00000042235	SNRPN	100	98.750	Macaca_fascicularis
ENSBTAG00000008251	SNRPN	100	98.750	ENSMMUG00000023139	SNURF	100	98.750	Macaca_mulatta
ENSBTAG00000008251	SNRPN	100	98.750	ENSMNEG00000031291	SNRPN	100	98.750	Macaca_nemestrina
ENSBTAG00000008251	SNRPN	100	98.750	ENSMLEG00000038837	SNRPN	100	98.750	Mandrillus_leucophaeus
ENSBTAG00000008251	SNRPN	93	89.806	ENSMGAG00000008696	SNRPN	89	89.720	Meleagris_gallopavo
ENSBTAG00000008251	SNRPN	100	98.750	ENSMAUG00000000051	Snrpn	100	98.750	Mesocricetus_auratus
ENSBTAG00000008251	SNRPN	100	98.750	ENSMICG00000042356	SNRPN	100	98.750	Microcebus_murinus
ENSBTAG00000008251	SNRPN	100	98.750	ENSMOCG00000015350	Snrpn	100	98.750	Microtus_ochrogaster
ENSBTAG00000008251	SNRPN	96	92.958	ENSMODG00000013926	-	92	93.213	Monodelphis_domestica
ENSBTAG00000008251	SNRPN	100	98.750	MGP_CAROLIEiJ_G0029815	Snrpn	100	98.750	Mus_caroli
ENSBTAG00000008251	SNRPN	100	98.750	ENSMUSG00000102252	Snrpn	100	98.750	Mus_musculus
ENSBTAG00000008251	SNRPN	100	98.750	MGP_PahariEiJ_G0013040	Snrpn	100	98.750	Mus_pahari
ENSBTAG00000008251	SNRPN	100	98.750	MGP_SPRETEiJ_G0030918	Snrpn	100	98.750	Mus_spretus
ENSBTAG00000008251	SNRPN	100	99.167	ENSMPUG00000014638	-	100	99.167	Mustela_putorius_furo
ENSBTAG00000008251	SNRPN	89	51.515	ENSMPUG00000007115	-	64	70.423	Mustela_putorius_furo
ENSBTAG00000008251	SNRPN	95	62.281	ENSMLUG00000024428	-	62	71.111	Myotis_lucifugus
ENSBTAG00000008251	SNRPN	92	61.275	ENSMLUG00000025849	-	78	61.677	Myotis_lucifugus
ENSBTAG00000008251	SNRPN	99	99.582	ENSMLUG00000023361	-	98	99.582	Myotis_lucifugus
ENSBTAG00000008251	SNRPN	100	98.750	ENSNGAG00000000181	Snrpn	100	98.750	Nannospalax_galili
ENSBTAG00000008251	SNRPN	100	82.500	ENSNLEG00000001376	SNRPN	99	82.500	Nomascus_leucogenys
ENSBTAG00000008251	SNRPN	100	98.649	ENSODEG00000019708	-	93	98.649	Octodon_degus
ENSBTAG00000008251	SNRPN	100	99.167	ENSODEG00000013478	-	100	99.167	Octodon_degus
ENSBTAG00000008251	SNRPN	99	81.900	ENSODEG00000016065	-	87	83.092	Octodon_degus
ENSBTAG00000008251	SNRPN	100	98.750	ENSODEG00000020110	-	100	98.750	Octodon_degus
ENSBTAG00000008251	SNRPN	100	98.340	ENSOCUG00000003532	-	100	98.340	Oryctolagus_cuniculus
ENSBTAG00000008251	SNRPN	78	90.173	ENSORLG00020007490	SNRPN	75	90.710	Oryzias_latipes_hni
ENSBTAG00000008251	SNRPN	78	90.173	ENSORLG00015003332	SNRPN	75	90.710	Oryzias_latipes_hsok
ENSBTAG00000008251	SNRPN	78	90.751	ENSOMEG00000002066	SNRPN	75	91.257	Oryzias_melastigma
ENSBTAG00000008251	SNRPN	100	98.750	ENSOGAG00000007392	SNRPN	100	98.750	Otolemur_garnettii
ENSBTAG00000008251	SNRPN	100	100.000	ENSOARG00000009080	SNRPN	100	100.000	Ovis_aries
ENSBTAG00000008251	SNRPN	98	72.018	ENSPPAG00000034049	-	86	70.813	Pan_paniscus
ENSBTAG00000008251	SNRPN	100	98.750	ENSPPAG00000027650	SNRPN	100	98.750	Pan_paniscus
ENSBTAG00000008251	SNRPN	100	99.167	ENSPPRG00000019878	-	100	99.167	Panthera_pardus
ENSBTAG00000008251	SNRPN	92	63.415	ENSPPRG00000006957	-	80	69.277	Panthera_pardus
ENSBTAG00000008251	SNRPN	100	98.750	ENSPTIG00000004537	SNRPN	100	98.750	Panthera_tigris_altaica
ENSBTAG00000008251	SNRPN	100	98.750	ENSPTRG00000006826	SNRPN	100	98.750	Pan_troglodytes
ENSBTAG00000008251	SNRPN	98	72.477	ENSPTRG00000052400	-	86	71.292	Pan_troglodytes
ENSBTAG00000008251	SNRPN	100	98.750	ENSPANG00000020142	SNRPN	100	98.750	Papio_anubis
ENSBTAG00000008251	SNRPN	96	84.977	ENSPEMG00000013920	-	91	85.973	Peromyscus_maniculatus_bairdii
ENSBTAG00000008251	SNRPN	100	98.750	ENSPEMG00000012911	-	100	98.750	Peromyscus_maniculatus_bairdii
ENSBTAG00000008251	SNRPN	95	94.298	ENSPEMG00000020979	-	95	94.298	Peromyscus_maniculatus_bairdii
ENSBTAG00000008251	SNRPN	96	93.897	ENSPCIG00000004699	-	71	93.665	Phascolarctos_cinereus
ENSBTAG00000008251	SNRPN	74	92.121	ENSPMEG00000020674	SNRPN	75	91.257	Poecilia_mexicana
ENSBTAG00000008251	SNRPN	100	98.750	ENSPPYG00000006269	SNURF	100	98.750	Pongo_abelii
ENSBTAG00000008251	SNRPN	100	98.750	ENSPCOG00000014231	SNRPN	100	98.750	Propithecus_coquereli
ENSBTAG00000008251	SNRPN	100	98.750	ENSRNOG00000059764	Snrpn	100	98.750	Rattus_norvegicus
ENSBTAG00000008251	SNRPN	100	98.750	ENSRBIG00000041765	SNRPN	100	98.750	Rhinopithecus_bieti
ENSBTAG00000008251	SNRPN	100	98.750	ENSRROG00000035157	SNRPN	100	98.750	Rhinopithecus_roxellana
ENSBTAG00000008251	SNRPN	100	98.750	ENSSBOG00000000110	-	100	98.750	Saimiri_boliviensis_boliviensis
ENSBTAG00000008251	SNRPN	100	97.917	ENSSBOG00000024929	-	100	97.917	Saimiri_boliviensis_boliviensis
ENSBTAG00000008251	SNRPN	96	93.897	ENSSHAG00000010257	-	91	93.665	Sarcophilus_harrisii
ENSBTAG00000008251	SNRPN	99	78.243	ENSSARG00000000072	SNRPN	100	78.243	Sorex_araneus
ENSBTAG00000008251	SNRPN	100	99.583	ENSSSCG00000028124	SNRPN	100	99.583	Sus_scrofa
ENSBTAG00000008251	SNRPN	100	100.000	ENSTTRG00000010966	SNRPN	89	100.000	Tursiops_truncatus
ENSBTAG00000008251	SNRPN	100	99.099	ENSUAMG00000016284	SNRPN	78	99.103	Ursus_americanus
ENSBTAG00000008251	SNRPN	100	99.167	ENSUMAG00000025589	SNRPN	100	99.167	Ursus_maritimus
ENSBTAG00000008251	SNRPN	100	99.099	ENSVVUG00000017971	SNRPN	94	99.127	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	-	IEA	Component