EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000008355 (Gene tree)
Gene ID: 282703
Gene Symbol: CPSF1
Alias: -
Full Name: Bos taurus cleavage and polyadenylation specific factor 1 (CPSF1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 14452 bases
Position: chr14:542386-556837
Accession: NM_174720
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000011004	CPSF_A	PF03178.15	9.6e-93	1	1
ENSBTAP00000071935	CPSF_A	PF03178.15	9.6e-93	1	1
ENSBTAP00000072115	CPSF_A	PF03178.15	3.4e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000011004	-	4544	XM_010811819	ENSBTAP00000011004	1469 (aa)	XP_010810121	Q10569
ENSBTAT00000071625	-	4710	-	ENSBTAP00000072115	1388 (aa)	-	-
ENSBTAT00000069645	-	4621	-	ENSBTAP00000071935	1469 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000008355's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000008355's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000008355	CPSF1	100	94.604	ENSG00000071894	CPSF1	100	94.426	Homo_sapiens
ENSBTAG00000008355	CPSF1	100	77.419	ENSAPOG00000019621	cpsf1	100	76.841	Acanthochromis_polyacanthus
ENSBTAG00000008355	CPSF1	100	93.521	ENSAMEG00000005557	CPSF1	100	93.539	Ailuropoda_melanoleuca
ENSBTAG00000008355	CPSF1	100	78.001	ENSACIG00000006112	cpsf1	100	77.242	Amphilophus_citrinellus
ENSBTAG00000008355	CPSF1	100	78.740	ENSAOCG00000007120	cpsf1	100	78.011	Amphiprion_ocellaris
ENSBTAG00000008355	CPSF1	100	78.970	ENSAPEG00000005755	cpsf1	100	78.393	Amphiprion_percula
ENSBTAG00000008355	CPSF1	100	77.521	ENSATEG00000011097	cpsf1	100	77.071	Anabas_testudineus
ENSBTAG00000008355	CPSF1	91	81.798	ENSACAG00000009655	CPSF1	100	81.798	Anolis_carolinensis
ENSBTAG00000008355	CPSF1	100	94.960	ENSANAG00000036514	CPSF1	100	94.694	Aotus_nancymaae
ENSBTAG00000008355	CPSF1	100	77.630	ENSACLG00000012231	cpsf1	99	77.547	Astatotilapia_calliptera
ENSBTAG00000008355	CPSF1	100	72.434	ENSAMXG00000008485	cpsf1	100	72.252	Astyanax_mexicanus
ENSBTAG00000008355	CPSF1	100	31.386	WBGene00022301	cpsf-1	95	40.653	Caenorhabditis_elegans
ENSBTAG00000008355	CPSF1	100	94.816	ENSCJAG00000021421	CPSF1	100	94.558	Callithrix_jacchus
ENSBTAG00000008355	CPSF1	100	95.317	ENSCAFG00000001600	CPSF1	100	95.221	Canis_familiaris
ENSBTAG00000008355	CPSF1	100	95.371	ENSCAFG00020020821	CPSF1	100	95.371	Canis_lupus_dingo
ENSBTAG00000008355	CPSF1	100	92.610	ENSCHIG00000015833	CPSF1	100	92.610	Capra_hircus
ENSBTAG00000008355	CPSF1	100	94.960	ENSTSYG00000028560	CPSF1	99	97.101	Carlito_syrichta
ENSBTAG00000008355	CPSF1	99	94.614	ENSCAPG00000014921	CPSF1	99	93.460	Cavia_aperea
ENSBTAG00000008355	CPSF1	100	93.061	ENSCPOG00000011448	CPSF1	100	93.061	Cavia_porcellus
ENSBTAG00000008355	CPSF1	100	94.960	ENSCCAG00000037658	CPSF1	100	94.762	Cebus_capucinus
ENSBTAG00000008355	CPSF1	100	94.600	ENSCATG00000037234	CPSF1	99	96.450	Cercocebus_atys
ENSBTAG00000008355	CPSF1	100	95.245	ENSCLAG00000012166	CPSF1	100	94.894	Chinchilla_lanigera
ENSBTAG00000008355	CPSF1	100	94.816	ENSCSAG00000008502	CPSF1	100	94.490	Chlorocebus_sabaeus
ENSBTAG00000008355	CPSF1	99	87.090	ENSCPBG00000018910	CPSF1	96	87.570	Chrysemys_picta_bellii
ENSBTAG00000008355	CPSF1	94	48.061	ENSCING00000000514	-	100	47.926	Ciona_intestinalis
ENSBTAG00000008355	CPSF1	99	47.286	ENSCSAVG00000002293	-	99	47.134	Ciona_savignyi
ENSBTAG00000008355	CPSF1	100	91.151	ENSCANG00000032760	CPSF1	99	89.362	Colobus_angolensis_palliatus
ENSBTAG00000008355	CPSF1	100	94.308	ENSCGRG00001016344	Cpsf1	100	94.010	Cricetulus_griseus_chok1gshd
ENSBTAG00000008355	CPSF1	100	91.931	ENSCGRG00000003118	Cpsf1	100	91.967	Cricetulus_griseus_crigri
ENSBTAG00000008355	CPSF1	100	77.426	ENSCSEG00000013464	cpsf1	100	76.495	Cynoglossus_semilaevis
ENSBTAG00000008355	CPSF1	90	75.129	ENSCVAG00000014059	cpsf1	100	67.635	Cyprinodon_variegatus
ENSBTAG00000008355	CPSF1	100	78.898	ENSDARG00000034178	cpsf1	100	78.161	Danio_rerio
ENSBTAG00000008355	CPSF1	56	95.652	ENSDNOG00000043654	CPSF1	94	95.652	Dasypus_novemcinctus
ENSBTAG00000008355	CPSF1	100	94.452	ENSDORG00000006278	Cpsf1	99	94.080	Dipodomys_ordii
ENSBTAG00000008355	CPSF1	100	44.444	FBgn0024698	Cpsf160	100	44.114	Drosophila_melanogaster
ENSBTAG00000008355	CPSF1	79	99.329	ENSETEG00000006022	CPSF1	83	99.329	Echinops_telfairi
ENSBTAG00000008355	CPSF1	100	95.779	ENSEASG00005010774	CPSF1	100	95.779	Equus_asinus_asinus
ENSBTAG00000008355	CPSF1	100	95.821	ENSECAG00000022209	CPSF1	100	95.779	Equus_caballus
ENSBTAG00000008355	CPSF1	100	93.880	ENSEEUG00000000471	CPSF1	100	93.401	Erinaceus_europaeus
ENSBTAG00000008355	CPSF1	100	77.881	ENSELUG00000012271	cpsf1	100	77.471	Esox_lucius
ENSBTAG00000008355	CPSF1	100	95.029	ENSFDAG00000016060	CPSF1	100	94.622	Fukomys_damarensis
ENSBTAG00000008355	CPSF1	100	76.538	ENSFHEG00000016801	cpsf1	100	75.727	Fundulus_heteroclitus
ENSBTAG00000008355	CPSF1	100	77.396	ENSGMOG00000000796	cpsf1	100	76.809	Gadus_morhua
ENSBTAG00000008355	CPSF1	95	75.920	ENSGAFG00000018890	cpsf1	100	74.906	Gambusia_affinis
ENSBTAG00000008355	CPSF1	100	78.152	ENSGACG00000008703	cpsf1	100	77.245	Gasterosteus_aculeatus
ENSBTAG00000008355	CPSF1	100	82.721	ENSGAGG00000004276	CPSF1	98	87.573	Gopherus_agassizii
ENSBTAG00000008355	CPSF1	100	94.669	ENSGGOG00000016185	CPSF1	100	94.486	Gorilla_gorilla
ENSBTAG00000008355	CPSF1	100	79.080	ENSHBUG00000018900	cpsf1	100	78.329	Haplochromis_burtoni
ENSBTAG00000008355	CPSF1	100	95.245	ENSHGLG00000016139	CPSF1	100	94.758	Heterocephalus_glaber_female
ENSBTAG00000008355	CPSF1	100	95.173	ENSHGLG00100009750	CPSF1	100	94.690	Heterocephalus_glaber_male
ENSBTAG00000008355	CPSF1	100	76.690	ENSHCOG00000018509	cpsf1	100	75.683	Hippocampus_comes
ENSBTAG00000008355	CPSF1	100	75.232	ENSIPUG00000011259	cpsf1	100	74.696	Ictalurus_punctatus
ENSBTAG00000008355	CPSF1	100	94.257	ENSSTOG00000009957	CPSF1	99	93.973	Ictidomys_tridecemlineatus
ENSBTAG00000008355	CPSF1	100	94.452	ENSJJAG00000023002	Cpsf1	100	94.146	Jaculus_jaculus
ENSBTAG00000008355	CPSF1	91	79.360	ENSKMAG00000001940	cpsf1	99	79.360	Kryptolebias_marmoratus
ENSBTAG00000008355	CPSF1	100	76.826	ENSLBEG00000003601	cpsf1	100	76.611	Labrus_bergylta
ENSBTAG00000008355	CPSF1	88	78.880	ENSLACG00000000233	CPSF1	100	67.657	Latimeria_chalumnae
ENSBTAG00000008355	CPSF1	100	77.276	ENSLOCG00000008484	cpsf1	100	77.033	Lepisosteus_oculatus
ENSBTAG00000008355	CPSF1	100	93.948	ENSLAFG00000022601	CPSF1	100	93.812	Loxodonta_africana
ENSBTAG00000008355	CPSF1	100	94.600	ENSMFAG00000037013	CPSF1	99	96.154	Macaca_fascicularis
ENSBTAG00000008355	CPSF1	100	94.672	ENSMMUG00000007380	CPSF1	98	96.519	Macaca_mulatta
ENSBTAG00000008355	CPSF1	100	94.744	ENSMNEG00000043564	CPSF1	100	94.444	Macaca_nemestrina
ENSBTAG00000008355	CPSF1	100	94.672	ENSMLEG00000043010	CPSF1	99	96.154	Mandrillus_leucophaeus
ENSBTAG00000008355	CPSF1	100	78.050	ENSMAMG00000003803	cpsf1	100	77.240	Mastacembelus_armatus
ENSBTAG00000008355	CPSF1	100	77.498	ENSMZEG00005001168	cpsf1	100	76.291	Maylandia_zebra
ENSBTAG00000008355	CPSF1	100	94.452	ENSMAUG00000003601	Cpsf1	100	94.078	Mesocricetus_auratus
ENSBTAG00000008355	CPSF1	100	95.389	ENSMICG00000015767	CPSF1	100	95.031	Microcebus_murinus
ENSBTAG00000008355	CPSF1	100	94.524	ENSMOCG00000022758	Cpsf1	100	94.146	Microtus_ochrogaster
ENSBTAG00000008355	CPSF1	100	78.592	ENSMMOG00000021245	cpsf1	100	77.868	Mola_mola
ENSBTAG00000008355	CPSF1	100	92.391	ENSMODG00000010755	CPSF1	100	91.927	Monodelphis_domestica
ENSBTAG00000008355	CPSF1	100	77.317	ENSMALG00000020545	cpsf1	100	76.678	Monopterus_albus
ENSBTAG00000008355	CPSF1	100	94.669	MGP_CAROLIEiJ_G0019936	Cpsf1	100	94.418	Mus_caroli
ENSBTAG00000008355	CPSF1	100	94.597	ENSMUSG00000034022	Cpsf1	100	94.350	Mus_musculus
ENSBTAG00000008355	CPSF1	100	94.741	MGP_PahariEiJ_G0019946	Cpsf1	100	94.486	Mus_pahari
ENSBTAG00000008355	CPSF1	100	94.597	MGP_SPRETEiJ_G0020839	Cpsf1	100	94.350	Mus_spretus
ENSBTAG00000008355	CPSF1	98	95.242	ENSMPUG00000006419	CPSF1	93	95.926	Mustela_putorius_furo
ENSBTAG00000008355	CPSF1	100	94.452	ENSNGAG00000022460	Cpsf1	100	94.146	Nannospalax_galili
ENSBTAG00000008355	CPSF1	100	74.497	ENSNBRG00000000813	cpsf1	100	73.388	Neolamprologus_brichardi
ENSBTAG00000008355	CPSF1	86	84.133	ENSNLEG00000010633	-	99	84.381	Nomascus_leucogenys
ENSBTAG00000008355	CPSF1	85	89.788	ENSMEUG00000014922	CPSF1	85	89.902	Notamacropus_eugenii
ENSBTAG00000008355	CPSF1	65	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSBTAG00000008355	CPSF1	100	95.173	ENSODEG00000013995	CPSF1	100	94.826	Octodon_degus
ENSBTAG00000008355	CPSF1	100	79.511	ENSONIG00000007676	cpsf1	100	78.668	Oreochromis_niloticus
ENSBTAG00000008355	CPSF1	60	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
ENSBTAG00000008355	CPSF1	100	76.939	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSBTAG00000008355	CPSF1	100	77.010	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSBTAG00000008355	CPSF1	100	76.923	ENSORLG00015009979	cpsf1	100	76.235	Oryzias_latipes_hsok
ENSBTAG00000008355	CPSF1	100	76.620	ENSOMEG00000011849	cpsf1	100	76.270	Oryzias_melastigma
ENSBTAG00000008355	CPSF1	100	95.320	ENSOGAG00000000315	CPSF1	100	94.966	Otolemur_garnettii
ENSBTAG00000008355	CPSF1	100	94.672	ENSPPAG00000019280	CPSF1	100	94.490	Pan_paniscus
ENSBTAG00000008355	CPSF1	100	95.396	ENSPTRG00000051253	-	100	95.102	Pan_troglodytes
ENSBTAG00000008355	CPSF1	100	94.672	ENSPTRG00000049288	-	100	94.490	Pan_troglodytes
ENSBTAG00000008355	CPSF1	100	94.600	ENSPANG00000015005	CPSF1	100	94.304	Papio_anubis
ENSBTAG00000008355	CPSF1	100	80.101	ENSPKIG00000002582	cpsf1	100	79.598	Paramormyrops_kingsleyae
ENSBTAG00000008355	CPSF1	100	92.319	ENSPCIG00000009035	CPSF1	100	91.859	Phascolarctos_cinereus
ENSBTAG00000008355	CPSF1	100	76.404	ENSPFOG00000012870	cpsf1	100	75.548	Poecilia_formosa
ENSBTAG00000008355	CPSF1	100	75.736	ENSPREG00000016307	cpsf1	100	74.967	Poecilia_reticulata
ENSBTAG00000008355	CPSF1	100	86.667	ENSPPYG00000018973	CPSF1	100	86.667	Pongo_abelii
ENSBTAG00000008355	CPSF1	94	89.903	ENSPCAG00000011541	CPSF1	94	89.730	Procavia_capensis
ENSBTAG00000008355	CPSF1	100	91.289	ENSPCOG00000020001	CPSF1	100	91.224	Propithecus_coquereli
ENSBTAG00000008355	CPSF1	89	99.130	ENSPVAG00000006761	CPSF1	91	99.130	Pteropus_vampyrus
ENSBTAG00000008355	CPSF1	100	78.014	ENSPNYG00000004906	cpsf1	100	77.331	Pundamilia_nyererei
ENSBTAG00000008355	CPSF1	100	74.247	ENSPNAG00000024395	cpsf1	100	73.627	Pygocentrus_nattereri
ENSBTAG00000008355	CPSF1	100	94.597	ENSRNOG00000030705	Cpsf1	100	94.350	Rattus_norvegicus
ENSBTAG00000008355	CPSF1	100	94.744	ENSRBIG00000044907	CPSF1	100	94.490	Rhinopithecus_bieti
ENSBTAG00000008355	CPSF1	100	94.672	ENSRROG00000044861	CPSF1	98	96.450	Rhinopithecus_roxellana
ENSBTAG00000008355	CPSF1	100	94.816	ENSSBOG00000027177	CPSF1	100	94.444	Saimiri_boliviensis_boliviensis
ENSBTAG00000008355	CPSF1	100	92.103	ENSSHAG00000006500	CPSF1	100	91.655	Sarcophilus_harrisii
ENSBTAG00000008355	CPSF1	100	79.571	ENSSFOG00015004606	cpsf1	100	79.643	Scleropages_formosus
ENSBTAG00000008355	CPSF1	100	77.388	ENSSMAG00000020547	cpsf1	100	76.611	Scophthalmus_maximus
ENSBTAG00000008355	CPSF1	100	79.110	ENSSDUG00000001100	cpsf1	100	77.951	Seriola_dumerili
ENSBTAG00000008355	CPSF1	100	79.095	ENSSLDG00000003619	cpsf1	100	78.072	Seriola_lalandi_dorsalis
ENSBTAG00000008355	CPSF1	87	95.833	ENSSARG00000003643	CPSF1	92	95.833	Sorex_araneus
ENSBTAG00000008355	CPSF1	100	85.848	ENSSPUG00000014396	CPSF1	99	85.947	Sphenodon_punctatus
ENSBTAG00000008355	CPSF1	100	77.544	ENSSPAG00000005349	cpsf1	100	77.025	Stegastes_partitus
ENSBTAG00000008355	CPSF1	100	94.894	ENSSSCG00000005906	CPSF1	100	94.894	Sus_scrofa
ENSBTAG00000008355	CPSF1	97	78.114	ENSTRUG00000013134	cpsf1	99	76.664	Takifugu_rubripes
ENSBTAG00000008355	CPSF1	97	79.106	ENSTNIG00000014027	cpsf1	100	76.949	Tetraodon_nigroviridis
ENSBTAG00000008355	CPSF1	75	94.653	ENSTBEG00000001756	CPSF1	88	94.653	Tupaia_belangeri
ENSBTAG00000008355	CPSF1	90	92.881	ENSTTRG00000001937	CPSF1	90	92.881	Tursiops_truncatus
ENSBTAG00000008355	CPSF1	100	95.461	ENSUAMG00000006476	CPSF1	98	95.432	Ursus_americanus
ENSBTAG00000008355	CPSF1	100	77.227	ENSXCOG00000003608	cpsf1	100	76.035	Xiphophorus_couchianus
ENSBTAG00000008355	CPSF1	100	76.758	ENSXMAG00000005798	cpsf1	100	75.729	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	ISS	Component