EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000008461 (Gene tree)
Gene ID: 505082
Gene Symbol: LSG1
Alias: -
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 24594 bases
Position: chr1:72877165-72901758
Accession: 31049
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000011134	MMR_HSR1	PF01926.23	6.4e-14	1	1
ENSBTAP00000058751	MMR_HSR1	PF01926.23	6.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000072998	-	4314	-	ENSBTAP00000058751	652 (aa)	-	UPI0000F33E29
ENSBTAT00000011134	-	1926	-	ENSBTAP00000011134	641 (aa)	-	F1MZT8

Gene Model

Click here to download ENSBTAG00000008461's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000008461's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000008461	LSG1	100	84.674	ENSG00000041802	LSG1	98	92.529	Homo_sapiens
ENSBTAG00000008461	LSG1	99	64.795	ENSAPOG00000009694	lsg1	99	63.994	Acanthochromis_polyacanthus
ENSBTAG00000008461	LSG1	99	82.701	ENSAMEG00000009343	LSG1	99	81.639	Ailuropoda_melanoleuca
ENSBTAG00000008461	LSG1	98	65.517	ENSACIG00000012406	lsg1	99	66.052	Amphilophus_citrinellus
ENSBTAG00000008461	LSG1	99	64.036	ENSAOCG00000016066	lsg1	99	64.985	Amphiprion_ocellaris
ENSBTAG00000008461	LSG1	99	64.985	ENSAPEG00000003252	lsg1	99	64.985	Amphiprion_percula
ENSBTAG00000008461	LSG1	98	65.576	ENSATEG00000011794	lsg1	99	65.802	Anabas_testudineus
ENSBTAG00000008461	LSG1	95	65.024	ENSACAG00000004222	LSG1	99	64.115	Anolis_carolinensis
ENSBTAG00000008461	LSG1	100	86.191	ENSANAG00000021153	LSG1	100	85.736	Aotus_nancymaae
ENSBTAG00000008461	LSG1	99	63.731	ENSACLG00000000520	lsg1	99	63.582	Astatotilapia_calliptera
ENSBTAG00000008461	LSG1	99	63.018	ENSAMXG00000008271	lsg1	99	63.872	Astyanax_mexicanus
ENSBTAG00000008461	LSG1	76	48.585	WBGene00016907	C53H9.2	95	53.103	Caenorhabditis_elegans
ENSBTAG00000008461	LSG1	100	84.825	ENSCJAG00000013962	LSG1	100	84.825	Callithrix_jacchus
ENSBTAG00000008461	LSG1	95	82.080	ENSCAFG00000013445	LSG1	99	80.640	Canis_familiaris
ENSBTAG00000008461	LSG1	99	81.089	ENSCAFG00020002216	LSG1	99	80.417	Canis_lupus_dingo
ENSBTAG00000008461	LSG1	99	96.319	ENSCHIG00000015769	LSG1	99	96.319	Capra_hircus
ENSBTAG00000008461	LSG1	100	86.039	ENSTSYG00000001447	LSG1	100	84.977	Carlito_syrichta
ENSBTAG00000008461	LSG1	95	76.726	ENSCAPG00000009856	LSG1	100	76.737	Cavia_aperea
ENSBTAG00000008461	LSG1	100	83.763	ENSCCAG00000035744	LSG1	100	83.308	Cebus_capucinus
ENSBTAG00000008461	LSG1	100	85.584	ENSCATG00000042060	LSG1	100	83.763	Cercocebus_atys
ENSBTAG00000008461	LSG1	100	85.584	ENSCSAG00000008796	LSG1	92	85.281	Chlorocebus_sabaeus
ENSBTAG00000008461	LSG1	99	69.545	ENSCPBG00000015941	LSG1	83	69.545	Chrysemys_picta_bellii
ENSBTAG00000008461	LSG1	71	62.632	ENSCING00000007079	-	97	62.632	Ciona_intestinalis
ENSBTAG00000008461	LSG1	77	54.618	ENSCSAVG00000002514	-	100	54.618	Ciona_savignyi
ENSBTAG00000008461	LSG1	100	85.129	ENSCANG00000030709	LSG1	100	84.825	Colobus_angolensis_palliatus
ENSBTAG00000008461	LSG1	100	82.569	ENSCGRG00001019846	Lsg1	100	81.623	Cricetulus_griseus_chok1gshd
ENSBTAG00000008461	LSG1	100	82.569	ENSCGRG00000014617	Lsg1	100	81.623	Cricetulus_griseus_crigri
ENSBTAG00000008461	LSG1	98	64.142	ENSCSEG00000008522	lsg1	99	62.500	Cynoglossus_semilaevis
ENSBTAG00000008461	LSG1	97	66.142	ENSCVAG00000002484	lsg1	99	66.667	Cyprinodon_variegatus
ENSBTAG00000008461	LSG1	99	66.514	ENSDARG00000015352	lsg1	99	66.104	Danio_rerio
ENSBTAG00000008461	LSG1	100	83.714	ENSDNOG00000006224	LSG1	100	83.409	Dasypus_novemcinctus
ENSBTAG00000008461	LSG1	85	57.438	FBgn0266284	Ns3	99	46.412	Drosophila_melanogaster
ENSBTAG00000008461	LSG1	88	86.667	ENSETEG00000003888	LSG1	89	86.667	Echinops_telfairi
ENSBTAG00000008461	LSG1	88	57.358	ENSEBUG00000003119	lsg1	85	56.219	Eptatretus_burgeri
ENSBTAG00000008461	LSG1	100	85.432	ENSEASG00005000678	LSG1	100	84.219	Equus_asinus_asinus
ENSBTAG00000008461	LSG1	100	85.736	ENSECAG00000017659	LSG1	100	84.522	Equus_caballus
ENSBTAG00000008461	LSG1	88	81.897	ENSEEUG00000015217	LSG1	87	81.897	Erinaceus_europaeus
ENSBTAG00000008461	LSG1	99	62.901	ENSELUG00000023973	lsg1	99	62.595	Esox_lucius
ENSBTAG00000008461	LSG1	99	85.866	ENSFCAG00000024957	LSG1	99	85.866	Felis_catus
ENSBTAG00000008461	LSG1	92	66.232	ENSFALG00000007210	LSG1	94	66.232	Ficedula_albicollis
ENSBTAG00000008461	LSG1	100	77.914	ENSFDAG00000017373	LSG1	100	77.914	Fukomys_damarensis
ENSBTAG00000008461	LSG1	97	64.431	ENSFHEG00000003680	lsg1	99	62.722	Fundulus_heteroclitus
ENSBTAG00000008461	LSG1	98	61.059	ENSGMOG00000015834	lsg1	99	60.671	Gadus_morhua
ENSBTAG00000008461	LSG1	99	63.514	ENSGALG00000007058	LSG1	87	64.297	Gallus_gallus
ENSBTAG00000008461	LSG1	97	65.354	ENSGAFG00000015831	lsg1	99	65.438	Gambusia_affinis
ENSBTAG00000008461	LSG1	98	63.721	ENSGACG00000009323	lsg1	99	63.374	Gasterosteus_aculeatus
ENSBTAG00000008461	LSG1	100	85.129	ENSGGOG00000000520	LSG1	100	84.825	Gorilla_gorilla
ENSBTAG00000008461	LSG1	99	64.502	ENSHBUG00000005659	lsg1	99	64.350	Haplochromis_burtoni
ENSBTAG00000008461	LSG1	100	75.684	ENSHGLG00000017390	LSG1	100	75.189	Heterocephalus_glaber_female
ENSBTAG00000008461	LSG1	100	75.684	ENSHGLG00100018587	LSG1	100	75.495	Heterocephalus_glaber_male
ENSBTAG00000008461	LSG1	97	63.807	ENSHCOG00000016848	lsg1	99	63.553	Hippocampus_comes
ENSBTAG00000008461	LSG1	99	64.733	ENSIPUG00000008631	lsg1	99	64.427	Ictalurus_punctatus
ENSBTAG00000008461	LSG1	83	76.505	ENSSTOG00000010234	LSG1	97	79.588	Ictidomys_tridecemlineatus
ENSBTAG00000008461	LSG1	100	78.723	ENSJJAG00000015513	Lsg1	100	78.473	Jaculus_jaculus
ENSBTAG00000008461	LSG1	98	63.380	ENSKMAG00000009681	lsg1	99	62.883	Kryptolebias_marmoratus
ENSBTAG00000008461	LSG1	98	64.789	ENSLBEG00000024261	lsg1	99	63.804	Labrus_bergylta
ENSBTAG00000008461	LSG1	99	66.817	ENSLACG00000013399	LSG1	99	66.817	Latimeria_chalumnae
ENSBTAG00000008461	LSG1	98	66.410	ENSLOCG00000004918	lsg1	99	65.762	Lepisosteus_oculatus
ENSBTAG00000008461	LSG1	100	81.930	ENSLAFG00000012919	-	100	80.398	Loxodonta_africana
ENSBTAG00000008461	LSG1	100	85.584	ENSMFAG00000039903	LSG1	100	83.763	Macaca_fascicularis
ENSBTAG00000008461	LSG1	100	85.736	ENSMMUG00000010708	LSG1	100	85.432	Macaca_mulatta
ENSBTAG00000008461	LSG1	100	85.736	ENSMNEG00000031538	LSG1	100	83.915	Macaca_nemestrina
ENSBTAG00000008461	LSG1	100	85.736	ENSMLEG00000041184	LSG1	100	85.432	Mandrillus_leucophaeus
ENSBTAG00000008461	LSG1	99	63.982	ENSMAMG00000000470	lsg1	99	63.678	Mastacembelus_armatus
ENSBTAG00000008461	LSG1	99	64.502	ENSMZEG00005017865	lsg1	99	64.350	Maylandia_zebra
ENSBTAG00000008461	LSG1	88	66.269	ENSMGAG00000007050	LSG1	99	66.269	Meleagris_gallopavo
ENSBTAG00000008461	LSG1	91	80.067	ENSMAUG00000016976	Lsg1	93	80.737	Mesocricetus_auratus
ENSBTAG00000008461	LSG1	100	84.451	ENSMICG00000049087	LSG1	100	83.841	Microcebus_murinus
ENSBTAG00000008461	LSG1	100	81.374	ENSMOCG00000022136	Lsg1	100	81.985	Microtus_ochrogaster
ENSBTAG00000008461	LSG1	83	73.179	ENSMMOG00000008884	lsg1	99	71.111	Mola_mola
ENSBTAG00000008461	LSG1	99	58.886	ENSMODG00000019828	LSG1	99	58.600	Monodelphis_domestica
ENSBTAG00000008461	LSG1	100	80.675	MGP_CAROLIEiJ_G0020648	Lsg1	100	80.828	Mus_caroli
ENSBTAG00000008461	LSG1	100	81.317	ENSMUSG00000022538	Lsg1	100	81.135	Mus_musculus
ENSBTAG00000008461	LSG1	98	80.871	MGP_PahariEiJ_G0016352	Lsg1	100	81.317	Mus_pahari
ENSBTAG00000008461	LSG1	100	80.828	MGP_SPRETEiJ_G0021544	Lsg1	100	80.982	Mus_spretus
ENSBTAG00000008461	LSG1	99	83.891	ENSMPUG00000003734	LSG1	99	82.675	Mustela_putorius_furo
ENSBTAG00000008461	LSG1	99	85.145	ENSMLUG00000012548	LSG1	99	85.758	Myotis_lucifugus
ENSBTAG00000008461	LSG1	100	80.675	ENSNGAG00000021872	Lsg1	100	80.675	Nannospalax_galili
ENSBTAG00000008461	LSG1	100	85.129	ENSNLEG00000008293	LSG1	100	84.825	Nomascus_leucogenys
ENSBTAG00000008461	LSG1	70	71.134	ENSMEUG00000009041	-	82	71.134	Notamacropus_eugenii
ENSBTAG00000008461	LSG1	99	63.801	ENSONIG00000002635	lsg1	99	64.962	Oreochromis_niloticus
ENSBTAG00000008461	LSG1	95	72.258	ENSOANG00000012742	LSG1	99	72.419	Ornithorhynchus_anatinus
ENSBTAG00000008461	LSG1	100	81.942	ENSOCUG00000004817	LSG1	100	81.942	Oryctolagus_cuniculus
ENSBTAG00000008461	LSG1	98	65.102	ENSORLG00000007695	lsg1	99	65.031	Oryzias_latipes
ENSBTAG00000008461	LSG1	98	65.047	ENSORLG00020016286	lsg1	99	63.939	Oryzias_latipes_hni
ENSBTAG00000008461	LSG1	98	64.577	ENSORLG00015012025	lsg1	99	64.055	Oryzias_latipes_hsok
ENSBTAG00000008461	LSG1	98	64.476	ENSOMEG00000022379	lsg1	99	64.110	Oryzias_melastigma
ENSBTAG00000008461	LSG1	100	82.504	ENSOGAG00000003475	LSG1	100	81.175	Otolemur_garnettii
ENSBTAG00000008461	LSG1	99	96.626	ENSOARG00000020403	LSG1	99	96.626	Ovis_aries
ENSBTAG00000008461	LSG1	100	84.977	ENSPPAG00000029271	LSG1	100	84.674	Pan_paniscus
ENSBTAG00000008461	LSG1	99	84.511	ENSPPRG00000010281	LSG1	99	84.511	Panthera_pardus
ENSBTAG00000008461	LSG1	99	85.562	ENSPTIG00000010789	LSG1	99	85.562	Panthera_tigris_altaica
ENSBTAG00000008461	LSG1	100	84.825	ENSPTRG00000015760	LSG1	100	84.522	Pan_troglodytes
ENSBTAG00000008461	LSG1	100	85.584	ENSPANG00000018249	LSG1	100	83.763	Papio_anubis
ENSBTAG00000008461	LSG1	98	65.732	ENSPKIG00000002895	lsg1	100	65.706	Paramormyrops_kingsleyae
ENSBTAG00000008461	LSG1	96	66.406	ENSPSIG00000009821	LSG1	99	65.361	Pelodiscus_sinensis
ENSBTAG00000008461	LSG1	95	66.238	ENSPMGG00000000931	lsg1	99	65.756	Periophthalmus_magnuspinnatus
ENSBTAG00000008461	LSG1	100	81.707	ENSPEMG00000012082	-	100	80.734	Peromyscus_maniculatus_bairdii
ENSBTAG00000008461	LSG1	99	59.071	ENSPMAG00000007451	lsg1	99	58.601	Petromyzon_marinus
ENSBTAG00000008461	LSG1	99	67.188	ENSPCIG00000013890	LSG1	82	67.188	Phascolarctos_cinereus
ENSBTAG00000008461	LSG1	97	66.823	ENSPFOG00000021882	lsg1	99	66.159	Poecilia_formosa
ENSBTAG00000008461	LSG1	97	66.041	ENSPLAG00000019536	lsg1	99	65.244	Poecilia_latipinna
ENSBTAG00000008461	LSG1	97	66.147	ENSPMEG00000017281	lsg1	99	65.502	Poecilia_mexicana
ENSBTAG00000008461	LSG1	97	56.221	ENSPREG00000006048	lsg1	99	56.456	Poecilia_reticulata
ENSBTAG00000008461	LSG1	92	84.020	ENSPPYG00000014425	LSG1	100	84.020	Pongo_abelii
ENSBTAG00000008461	LSG1	90	85.333	ENSPCAG00000005511	LSG1	90	85.333	Procavia_capensis
ENSBTAG00000008461	LSG1	100	83.915	ENSPCOG00000012360	LSG1	100	84.067	Propithecus_coquereli
ENSBTAG00000008461	LSG1	99	63.582	ENSPNYG00000021994	lsg1	99	63.433	Pundamilia_nyererei
ENSBTAG00000008461	LSG1	99	65.250	ENSPNAG00000015533	lsg1	99	64.492	Pygocentrus_nattereri
ENSBTAG00000008461	LSG1	100	80.640	ENSRNOG00000001727	Lsg1	100	80.793	Rattus_norvegicus
ENSBTAG00000008461	LSG1	100	84.825	ENSRBIG00000029053	LSG1	100	84.522	Rhinopithecus_bieti
ENSBTAG00000008461	LSG1	100	84.825	ENSRROG00000037702	LSG1	100	84.522	Rhinopithecus_roxellana
ENSBTAG00000008461	LSG1	63	58.084	YGL099W	LSG1	70	58.084	Saccharomyces_cerevisiae
ENSBTAG00000008461	LSG1	100	85.888	ENSSBOG00000034938	LSG1	100	85.432	Saimiri_boliviensis_boliviensis
ENSBTAG00000008461	LSG1	78	67.241	ENSSHAG00000003487	LSG1	99	67.562	Sarcophilus_harrisii
ENSBTAG00000008461	LSG1	98	64.241	ENSSFOG00015008955	lsg1	99	64.188	Scleropages_formosus
ENSBTAG00000008461	LSG1	98	64.769	ENSSDUG00000004622	lsg1	99	64.492	Seriola_dumerili
ENSBTAG00000008461	LSG1	98	65.361	ENSSLDG00000010869	lsg1	99	64.286	Seriola_lalandi_dorsalis
ENSBTAG00000008461	LSG1	82	82.405	ENSSARG00000012981	LSG1	81	82.405	Sorex_araneus
ENSBTAG00000008461	LSG1	99	66.967	ENSSPUG00000016347	LSG1	99	66.718	Sphenodon_punctatus
ENSBTAG00000008461	LSG1	99	63.609	ENSSPAG00000005508	lsg1	99	64.067	Stegastes_partitus
ENSBTAG00000008461	LSG1	99	88.479	ENSSSCG00000011827	LSG1	99	88.479	Sus_scrofa
ENSBTAG00000008461	LSG1	89	64.430	ENSTGUG00000009068	LSG1	99	64.262	Taeniopygia_guttata
ENSBTAG00000008461	LSG1	97	61.875	ENSTRUG00000017380	lsg1	99	61.350	Takifugu_rubripes
ENSBTAG00000008461	LSG1	97	65.211	ENSTNIG00000015570	lsg1	99	64.545	Tetraodon_nigroviridis
ENSBTAG00000008461	LSG1	99	83.896	ENSTTRG00000000559	LSG1	99	83.896	Tursiops_truncatus
ENSBTAG00000008461	LSG1	99	83.587	ENSUAMG00000012454	LSG1	99	83.587	Ursus_americanus
ENSBTAG00000008461	LSG1	99	83.587	ENSUMAG00000000855	LSG1	99	83.587	Ursus_maritimus
ENSBTAG00000008461	LSG1	95	83.494	ENSVPAG00000012400	LSG1	99	83.494	Vicugna_pacos
ENSBTAG00000008461	LSG1	95	81.280	ENSVVUG00000008956	LSG1	97	79.840	Vulpes_vulpes
ENSBTAG00000008461	LSG1	99	67.527	ENSXETG00000003451	lsg1	99	67.752	Xenopus_tropicalis
ENSBTAG00000008461	LSG1	97	65.156	ENSXCOG00000003239	lsg1	99	65.038	Xiphophorus_couchianus
ENSBTAG00000008461	LSG1	97	65.055	ENSXMAG00000005536	lsg1	99	65.031	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005525	GTP binding	-	ISS	Function
GO:0005783	endoplasmic reticulum	-	ISS	Component
GO:0015030	Cajal body	-	ISS	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0051168	nuclear export	-	ISS	Process