EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000008498 (Gene tree)
Gene ID: 537706
Gene Symbol: ALYREF
Alias: -
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 4676 bases
Position: chr19:50999623-51004298
Accession: 25855
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000011202	RRM_1	PF00076.22	1.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000011202	-	1971	-	ENSBTAP00000011202	257 (aa)	-	Q3T0I4

Gene Model

Click here to download ENSBTAG00000008498's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG
bta03040	Spliceosome	KEGG
bta05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000008498's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000008498	ALYREF	100	98.054	ENSG00000183684	ALYREF	97	98.054	Homo_sapiens
ENSBTAG00000008498	ALYREF	100	68.345	ENSAPOG00000018455	ALYREF	100	72.302	Acanthochromis_polyacanthus
ENSBTAG00000008498	ALYREF	80	88.095	ENSAMEG00000017463	ALYREF	74	93.478	Ailuropoda_melanoleuca
ENSBTAG00000008498	ALYREF	100	75.954	ENSACAG00000010526	ALYREF	100	74.046	Anolis_carolinensis
ENSBTAG00000008498	ALYREF	100	82.490	ENSANAG00000028229	-	78	83.658	Aotus_nancymaae
ENSBTAG00000008498	ALYREF	69	95.480	ENSANAG00000022638	-	75	95.480	Aotus_nancymaae
ENSBTAG00000008498	ALYREF	100	97.276	ENSCJAG00000039942	ALYREF	97	97.276	Callithrix_jacchus
ENSBTAG00000008498	ALYREF	100	99.222	ENSCAFG00000005877	ALYREF	100	99.222	Canis_familiaris
ENSBTAG00000008498	ALYREF	100	99.222	ENSCAFG00020009815	ALYREF	100	99.222	Canis_lupus_dingo
ENSBTAG00000008498	ALYREF	100	99.225	ENSCHIG00000017396	ALYREF	97	99.225	Capra_hircus
ENSBTAG00000008498	ALYREF	88	83.117	ENSTSYG00000002272	ALYREF	69	98.286	Carlito_syrichta
ENSBTAG00000008498	ALYREF	52	97.761	ENSCAPG00000014727	-	100	97.761	Cavia_aperea
ENSBTAG00000008498	ALYREF	100	98.054	ENSCPOG00000013710	ALYREF	100	98.054	Cavia_porcellus
ENSBTAG00000008498	ALYREF	100	75.097	ENSCCAG00000030237	-	100	72.374	Cebus_capucinus
ENSBTAG00000008498	ALYREF	100	97.665	ENSCCAG00000020578	-	97	97.665	Cebus_capucinus
ENSBTAG00000008498	ALYREF	100	98.054	ENSCATG00000033169	ALYREF	97	98.054	Cercocebus_atys
ENSBTAG00000008498	ALYREF	100	89.494	ENSCLAG00000015026	ALYREF	100	89.494	Chinchilla_lanigera
ENSBTAG00000008498	ALYREF	100	98.054	ENSCSAG00000002216	ALYREF	97	98.054	Chlorocebus_sabaeus
ENSBTAG00000008498	ALYREF	70	94.475	ENSCANG00000034056	ALYREF	89	88.136	Colobus_angolensis_palliatus
ENSBTAG00000008498	ALYREF	100	94.553	ENSCGRG00001018191	-	100	92.218	Cricetulus_griseus_chok1gshd
ENSBTAG00000008498	ALYREF	74	91.623	ENSCGRG00000015871	-	90	86.559	Cricetulus_griseus_crigri
ENSBTAG00000008498	ALYREF	72	56.186	ENSCSEG00000015438	-	98	54.187	Cynoglossus_semilaevis
ENSBTAG00000008498	ALYREF	69	97.191	ENSDNOG00000002563	ALYREF	75	97.191	Dasypus_novemcinctus
ENSBTAG00000008498	ALYREF	88	83.111	ENSDORG00000025849	-	73	96.667	Dipodomys_ordii
ENSBTAG00000008498	ALYREF	69	96.067	ENSETEG00000016596	ALYREF	100	94.944	Echinops_telfairi
ENSBTAG00000008498	ALYREF	100	99.611	ENSEASG00005005824	ALYREF	95	99.611	Equus_asinus_asinus
ENSBTAG00000008498	ALYREF	100	99.611	ENSECAG00000018754	ALYREF	95	99.611	Equus_caballus
ENSBTAG00000008498	ALYREF	67	97.674	ENSEEUG00000010164	ALYREF	100	97.674	Erinaceus_europaeus
ENSBTAG00000008498	ALYREF	100	99.611	ENSFCAG00000022549	ALYREF	98	99.611	Felis_catus
ENSBTAG00000008498	ALYREF	80	88.835	ENSFDAG00000001213	ALYREF	93	87.379	Fukomys_damarensis
ENSBTAG00000008498	ALYREF	100	84.170	ENSGALG00000007237	ALYREF	100	83.398	Gallus_gallus
ENSBTAG00000008498	ALYREF	100	70.566	ENSGACG00000013328	ALYREF	100	71.429	Gasterosteus_aculeatus
ENSBTAG00000008498	ALYREF	100	83.588	ENSGAGG00000008536	ALYREF	100	82.443	Gopherus_agassizii
ENSBTAG00000008498	ALYREF	100	98.444	ENSGGOG00000013935	ALYREF	99	97.674	Gorilla_gorilla
ENSBTAG00000008498	ALYREF	100	96.887	ENSHGLG00000008293	ALYREF	100	96.887	Heterocephalus_glaber_female
ENSBTAG00000008498	ALYREF	81	82.819	ENSHGLG00100006949	ALYREF	77	96.133	Heterocephalus_glaber_male
ENSBTAG00000008498	ALYREF	100	68.539	ENSHCOG00000015046	ALYREF	100	69.853	Hippocampus_comes
ENSBTAG00000008498	ALYREF	100	95.720	ENSJJAG00000004134	-	100	95.720	Jaculus_jaculus
ENSBTAG00000008498	ALYREF	100	70.833	ENSLACG00000005694	ALYREF	100	71.591	Latimeria_chalumnae
ENSBTAG00000008498	ALYREF	73	96.809	ENSLAFG00000003083	ALYREF	98	95.109	Loxodonta_africana
ENSBTAG00000008498	ALYREF	100	95.331	ENSMFAG00000001394	ALYREF	97	95.331	Macaca_fascicularis
ENSBTAG00000008498	ALYREF	100	98.054	ENSMMUG00000012884	ALYREF	97	98.054	Macaca_mulatta
ENSBTAG00000008498	ALYREF	100	98.054	ENSMNEG00000043666	ALYREF	97	98.054	Macaca_nemestrina
ENSBTAG00000008498	ALYREF	72	86.316	ENSMLEG00000043353	ALYREF	82	88.268	Mandrillus_leucophaeus
ENSBTAG00000008498	ALYREF	100	79.767	ENSMAUG00000020552	-	100	74.708	Mesocricetus_auratus
ENSBTAG00000008498	ALYREF	100	98.054	ENSMICG00000017403	ALYREF	97	98.054	Microcebus_murinus
ENSBTAG00000008498	ALYREF	100	84.615	ENSMOCG00000016792	-	100	82.197	Microtus_ochrogaster
ENSBTAG00000008498	ALYREF	99	96.109	ENSMODG00000003030	ALYREF	84	96.109	Monodelphis_domestica
ENSBTAG00000008498	ALYREF	100	69.928	ENSMALG00000019408	ALYREF	100	71.636	Monopterus_albus
ENSBTAG00000008498	ALYREF	100	97.276	MGP_CAROLIEiJ_G0017529	Alyref	100	97.276	Mus_caroli
ENSBTAG00000008498	ALYREF	100	74.319	MGP_CAROLIEiJ_G0014874	Alyref2	100	70.817	Mus_caroli
ENSBTAG00000008498	ALYREF	91	65.106	ENSMUSG00000096640	Gm4312	62	63.547	Mus_musculus
ENSBTAG00000008498	ALYREF	100	62.030	ENSMUSG00000086727	4931428L18Rik	100	58.712	Mus_musculus
ENSBTAG00000008498	ALYREF	100	62.807	ENSMUSG00000094144	Gm21312	100	54.225	Mus_musculus
ENSBTAG00000008498	ALYREF	100	62.807	ENSMUSG00000097878	Gm8764	98	60.843	Mus_musculus
ENSBTAG00000008498	ALYREF	100	61.938	ENSMUSG00000090854	Gm4340	100	52.778	Mus_musculus
ENSBTAG00000008498	ALYREF	100	97.276	ENSMUSG00000025134	Alyref	100	97.276	Mus_musculus
ENSBTAG00000008498	ALYREF	91	66.239	ENSMUSG00000096744	Gm4307	62	65.025	Mus_musculus
ENSBTAG00000008498	ALYREF	100	71.595	ENSMUSG00000060244	Alyref2	100	70.039	Mus_musculus
ENSBTAG00000008498	ALYREF	91	66.239	ENSMUSG00000112931	Gm4303	62	65.025	Mus_musculus
ENSBTAG00000008498	ALYREF	91	66.239	ENSMUSG00000112856	Gm4305	62	65.025	Mus_musculus
ENSBTAG00000008498	ALYREF	100	61.654	ENSMUSG00000117091	AC153137.1	100	57.955	Mus_musculus
ENSBTAG00000008498	ALYREF	100	62.807	ENSMUSG00000097427	Gm6763	98	60.843	Mus_musculus
ENSBTAG00000008498	ALYREF	100	62.807	ENSMUSG00000091779	Gm21293	100	54.225	Mus_musculus
ENSBTAG00000008498	ALYREF	100	62.807	ENSMUSG00000095022	Gm20765	100	54.225	Mus_musculus
ENSBTAG00000008498	ALYREF	100	62.807	ENSMUSG00000097550	Gm21304	100	54.225	Mus_musculus
ENSBTAG00000008498	ALYREF	91	66.383	ENSMUSG00000091101	Gm4302	61	65.025	Mus_musculus
ENSBTAG00000008498	ALYREF	91	65.106	ENSMUSG00000094314	Gm4301	62	63.547	Mus_musculus
ENSBTAG00000008498	ALYREF	82	68.720	MGP_PahariEiJ_G0027254	-	82	66.502	Mus_pahari
ENSBTAG00000008498	ALYREF	82	68.720	MGP_PahariEiJ_G0027255	-	80	66.502	Mus_pahari
ENSBTAG00000008498	ALYREF	100	97.276	MGP_PahariEiJ_G0018655	-	100	97.276	Mus_pahari
ENSBTAG00000008498	ALYREF	74	97.884	MGP_PahariEiJ_G0018656	-	99	97.884	Mus_pahari
ENSBTAG00000008498	ALYREF	69	58.150	MGP_SPRETEiJ_G0016590	-	55	77.419	Mus_spretus
ENSBTAG00000008498	ALYREF	100	97.276	MGP_SPRETEiJ_G0018373	Alyref	100	97.276	Mus_spretus
ENSBTAG00000008498	ALYREF	100	71.206	MGP_SPRETEiJ_G0015679	Alyref2	100	69.650	Mus_spretus
ENSBTAG00000008498	ALYREF	98	63.922	ENSMLUG00000025677	-	77	61.961	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	100	52.632	ENSMLUG00000023213	-	72	55.080	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	64.341	ENSMLUG00000002626	-	98	65.504	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	58.846	ENSMLUG00000024471	-	82	53.257	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	61.905	ENSMLUG00000024447	-	76	61.111	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	62.353	ENSMLUG00000030407	-	77	60.784	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	84	59.361	ENSMLUG00000028343	-	85	65.730	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	82	84.579	ENSMLUG00000009555	-	66	94.382	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	64.143	ENSMLUG00000026271	-	79	62.550	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	63.492	ENSMLUG00000027352	-	77	62.302	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	63.241	ENSMLUG00000024976	-	79	60.079	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	58.594	ENSMLUG00000022869	-	71	63.285	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	70.635	ENSMLUG00000027516	-	78	67.460	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	98	56.589	ENSMLUG00000015043	-	98	53.282	Myotis_lucifugus
ENSBTAG00000008498	ALYREF	100	98.444	ENSNLEG00000010313	ALYREF	97	98.444	Nomascus_leucogenys
ENSBTAG00000008498	ALYREF	82	74.762	ENSMEUG00000002210	ALYREF	92	74.762	Notamacropus_eugenii
ENSBTAG00000008498	ALYREF	52	91.791	ENSOPRG00000005551	-	52	89.552	Ochotona_princeps
ENSBTAG00000008498	ALYREF	100	97.308	ENSODEG00000008359	ALYREF	100	97.308	Octodon_degus
ENSBTAG00000008498	ALYREF	100	69.091	ENSORLG00000012331	ALYREF	100	69.455	Oryzias_latipes
ENSBTAG00000008498	ALYREF	77	90.404	ENSOGAG00000012409	ALYREF	76	94.444	Otolemur_garnettii
ENSBTAG00000008498	ALYREF	69	100.000	ENSOARG00000017932	ALYREF	67	100.000	Ovis_aries
ENSBTAG00000008498	ALYREF	100	99.611	ENSPPRG00000010829	ALYREF	98	99.611	Panthera_pardus
ENSBTAG00000008498	ALYREF	56	99.310	ENSPTIG00000006399	ALYREF	81	99.310	Panthera_tigris_altaica
ENSBTAG00000008498	ALYREF	100	98.444	ENSPTRG00000009774	ALYREF	97	98.444	Pan_troglodytes
ENSBTAG00000008498	ALYREF	100	98.054	ENSPANG00000019265	ALYREF	97	98.054	Papio_anubis
ENSBTAG00000008498	ALYREF	51	92.481	ENSPSIG00000017541	ALYREF	98	93.233	Pelodiscus_sinensis
ENSBTAG00000008498	ALYREF	100	98.054	ENSPPYG00000008749	ALYREF	97	98.054	Pongo_abelii
ENSBTAG00000008498	ALYREF	100	98.054	ENSPCOG00000020874	ALYREF	97	98.054	Propithecus_coquereli
ENSBTAG00000008498	ALYREF	100	80.934	ENSPVAG00000017866	ALYREF	100	80.934	Pteropus_vampyrus
ENSBTAG00000008498	ALYREF	67	98.256	ENSRNOG00000036687	Alyref	91	98.256	Rattus_norvegicus
ENSBTAG00000008498	ALYREF	70	94.475	ENSRBIG00000039651	ALYREF	74	94.475	Rhinopithecus_bieti
ENSBTAG00000008498	ALYREF	90	90.086	ENSRROG00000045364	ALYREF	83	95.735	Rhinopithecus_roxellana
ENSBTAG00000008498	ALYREF	75	93.782	ENSSHAG00000010459	ALYREF	95	95.652	Sarcophilus_harrisii
ENSBTAG00000008498	ALYREF	100	52.158	ENSSDUG00000003992	-	100	53.381	Seriola_dumerili
ENSBTAG00000008498	ALYREF	100	53.091	ENSSLDG00000005386	-	100	53.957	Seriola_lalandi_dorsalis
ENSBTAG00000008498	ALYREF	100	83.206	ENSSPUG00000004600	ALYREF	100	81.298	Sphenodon_punctatus
ENSBTAG00000008498	ALYREF	100	68.817	ENSSPAG00000011178	ALYREF	97	69.892	Stegastes_partitus
ENSBTAG00000008498	ALYREF	100	99.222	ENSSSCG00000032655	ALYREF	100	99.222	Sus_scrofa
ENSBTAG00000008498	ALYREF	51	93.182	ENSTGUG00000003513	ALYREF	100	91.111	Taeniopygia_guttata
ENSBTAG00000008498	ALYREF	100	69.485	ENSTRUG00000008828	ALYREF	100	68.266	Takifugu_rubripes
ENSBTAG00000008498	ALYREF	69	98.315	ENSTBEG00000005834	ALYREF	100	98.315	Tupaia_belangeri
ENSBTAG00000008498	ALYREF	100	98.054	ENSTTRG00000012275	ALYREF	100	98.054	Tursiops_truncatus
ENSBTAG00000008498	ALYREF	69	85.311	ENSUAMG00000016931	ALYREF	66	83.051	Ursus_americanus
ENSBTAG00000008498	ALYREF	69	85.311	ENSUMAG00000016384	ALYREF	65	83.051	Ursus_maritimus
ENSBTAG00000008498	ALYREF	100	74.812	ENSXETG00000005391	alyref	100	73.359	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0051028	mRNA transport	-	IEA	Process