EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000008527 (Gene tree)
Gene ID: 507828
Gene Symbol: SRSF6
Alias: -
Full Name: Bos taurus serine and arginine rich splicing factor 6 (SRSF6)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 5830 bases
Position: chr13:72096560-72102389
Accession: NM_001035272
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000011240	RRM_1	PF00076.22	9.4e-33	1	2
ENSBTAP00000011240	RRM_1	PF00076.22	9.4e-33	2	2
ENSBTAP00000058829	RRM_1	PF00076.22	2.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download ENSBTAG00000008527's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03040	Spliceosome	KEGG
bta05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000008527's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000008527	SRSF6	51	48.649	ENSBTAG00000012792	SRSF9	71	42.286
ENSBTAG00000008527	SRSF6	51	48.649	ENSBTAG00000005584	-	71	42.286
ENSBTAG00000008527	SRSF6	56	46.835	ENSBTAG00000014891	SRSF7	58	46.835
ENSBTAG00000008527	SRSF6	57	41.148	ENSBTAG00000014766	SRSF1	78	42.584
ENSBTAG00000008527	SRSF6	50	73.134	ENSBTAG00000011596	SRSF5	67	64.324

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000008527	SRSF6	100	99.259	ENSG00000124193	SRSF6	100	99.259	Homo_sapiens
ENSBTAG00000008527	SRSF6	58	94.872	ENSAPOG00000016635	-	84	82.353	Acanthochromis_polyacanthus
ENSBTAG00000008527	SRSF6	94	87.692	ENSAMEG00000003710	SRSF6	93	87.616	Ailuropoda_melanoleuca
ENSBTAG00000008527	SRSF6	63	88.235	ENSACIG00000020091	-	95	81.102	Amphilophus_citrinellus
ENSBTAG00000008527	SRSF6	86	71.477	ENSACIG00000023658	-	56	87.778	Amphilophus_citrinellus
ENSBTAG00000008527	SRSF6	92	68.702	ENSAOCG00000019438	-	98	68.702	Amphiprion_ocellaris
ENSBTAG00000008527	SRSF6	65	84.091	ENSAOCG00000004309	-	57	83.696	Amphiprion_ocellaris
ENSBTAG00000008527	SRSF6	63	85.882	ENSAPEG00000020746	-	66	80.319	Amphiprion_percula
ENSBTAG00000008527	SRSF6	98	62.590	ENSAPEG00000013086	-	53	88.172	Amphiprion_percula
ENSBTAG00000008527	SRSF6	66	84.270	ENSATEG00000007255	-	71	80.541	Anabas_testudineus
ENSBTAG00000008527	SRSF6	94	81.288	ENSACAG00000002061	SRSF6	92	82.609	Anolis_carolinensis
ENSBTAG00000008527	SRSF6	100	99.259	ENSANAG00000024080	SRSF6	100	99.259	Aotus_nancymaae
ENSBTAG00000008527	SRSF6	54	90.411	ENSACLG00000024373	-	96	80.645	Astatotilapia_calliptera
ENSBTAG00000008527	SRSF6	55	91.892	ENSAMXG00000003101	-	51	84.737	Astyanax_mexicanus
ENSBTAG00000008527	SRSF6	55	93.243	ENSAMXG00000042692	-	96	78.519	Astyanax_mexicanus
ENSBTAG00000008527	SRSF6	100	99.259	ENSCJAG00000048403	SRSF6	100	99.259	Callithrix_jacchus
ENSBTAG00000008527	SRSF6	100	100.000	ENSCAFG00000009289	SRSF6	100	100.000	Canis_familiaris
ENSBTAG00000008527	SRSF6	100	100.000	ENSCAFG00020013559	SRSF6	100	100.000	Canis_lupus_dingo
ENSBTAG00000008527	SRSF6	100	98.841	ENSCHIG00000009148	-	100	98.841	Capra_hircus
ENSBTAG00000008527	SRSF6	100	100.000	ENSCHIG00000015890	-	100	100.000	Capra_hircus
ENSBTAG00000008527	SRSF6	100	82.899	ENSTSYG00000026476	SRSF6	100	82.899	Carlito_syrichta
ENSBTAG00000008527	SRSF6	100	99.259	ENSCPOG00000011761	SRSF6	100	99.259	Cavia_porcellus
ENSBTAG00000008527	SRSF6	100	99.259	ENSCCAG00000026018	-	100	99.259	Cebus_capucinus
ENSBTAG00000008527	SRSF6	94	69.325	ENSCCAG00000018540	-	62	86.702	Cebus_capucinus
ENSBTAG00000008527	SRSF6	100	99.259	ENSCATG00000030794	SRSF6	100	99.259	Cercocebus_atys
ENSBTAG00000008527	SRSF6	100	99.259	ENSCLAG00000010247	SRSF6	100	99.259	Chinchilla_lanigera
ENSBTAG00000008527	SRSF6	100	97.101	ENSCSAG00000014022	SRSF6	100	97.101	Chlorocebus_sabaeus
ENSBTAG00000008527	SRSF6	100	82.609	ENSCHOG00000000561	SRSF6	100	82.609	Choloepus_hoffmanni
ENSBTAG00000008527	SRSF6	58	96.154	ENSCPBG00000018200	SRSF6	93	85.231	Chrysemys_picta_bellii
ENSBTAG00000008527	SRSF6	100	82.609	ENSCANG00000042529	-	100	82.609	Colobus_angolensis_palliatus
ENSBTAG00000008527	SRSF6	100	96.812	ENSCANG00000037774	-	100	96.812	Colobus_angolensis_palliatus
ENSBTAG00000008527	SRSF6	100	99.259	ENSCGRG00001022339	Srsf6	100	99.259	Cricetulus_griseus_chok1gshd
ENSBTAG00000008527	SRSF6	57	96.410	ENSCGRG00000006618	Srsf6	91	96.891	Cricetulus_griseus_crigri
ENSBTAG00000008527	SRSF6	58	94.872	ENSCSEG00000019778	SRSF6	90	84.252	Cynoglossus_semilaevis
ENSBTAG00000008527	SRSF6	58	93.590	ENSCVAG00000001863	SRSF6	95	85.039	Cyprinodon_variegatus
ENSBTAG00000008527	SRSF6	55	91.892	ENSDARG00000016783	srsf6b	87	90.361	Danio_rerio
ENSBTAG00000008527	SRSF6	94	96.296	ENSDNOG00000008410	SRSF6	93	96.584	Dasypus_novemcinctus
ENSBTAG00000008527	SRSF6	100	99.259	ENSDORG00000028378	Srsf6	100	99.259	Dipodomys_ordii
ENSBTAG00000008527	SRSF6	93	93.438	ENSETEG00000006221	SRSF6	93	91.304	Echinops_telfairi
ENSBTAG00000008527	SRSF6	100	98.551	ENSEASG00005023429	SRSF6	100	98.551	Equus_asinus_asinus
ENSBTAG00000008527	SRSF6	100	98.551	ENSECAG00000023932	SRSF6	100	98.551	Equus_caballus
ENSBTAG00000008527	SRSF6	57	94.872	ENSEEUG00000002324	SRSF6	89	94.872	Erinaceus_europaeus
ENSBTAG00000008527	SRSF6	98	60.000	ENSELUG00000024182	SRSF6	85	88.506	Esox_lucius
ENSBTAG00000008527	SRSF6	73	78.788	ENSELUG00000013506	SRSF6	88	78.788	Esox_lucius
ENSBTAG00000008527	SRSF6	100	99.130	ENSFCAG00000032814	SRSF6	100	99.130	Felis_catus
ENSBTAG00000008527	SRSF6	94	80.864	ENSFDAG00000012191	SRSF6	93	78.261	Fukomys_damarensis
ENSBTAG00000008527	SRSF6	87	71.053	ENSFHEG00000023065	srsf6a	55	87.500	Fundulus_heteroclitus
ENSBTAG00000008527	SRSF6	56	89.474	ENSGMOG00000014458	srsf6a	52	77.604	Gadus_morhua
ENSBTAG00000008527	SRSF6	61	78.049	ENSGMOG00000006105	srsf6a	62	70.950	Gadus_morhua
ENSBTAG00000008527	SRSF6	100	96.296	ENSGALG00000000990	SRSF6	100	96.296	Gallus_gallus
ENSBTAG00000008527	SRSF6	58	93.590	ENSGAFG00000019088	-	72	82.400	Gambusia_affinis
ENSBTAG00000008527	SRSF6	98	61.940	ENSGACG00000006084	srsf6a	53	83.871	Gasterosteus_aculeatus
ENSBTAG00000008527	SRSF6	58	96.154	ENSGAGG00000003238	SRSF6	93	85.231	Gopherus_agassizii
ENSBTAG00000008527	SRSF6	100	99.259	ENSGGOG00000009808	SRSF6	100	99.259	Gorilla_gorilla
ENSBTAG00000008527	SRSF6	56	90.789	ENSHBUG00000006386	-	58	84.239	Haplochromis_burtoni
ENSBTAG00000008527	SRSF6	88	78.218	ENSHGLG00000007701	-	58	78.075	Heterocephalus_glaber_female
ENSBTAG00000008527	SRSF6	100	99.259	ENSHGLG00000007348	SRSF6	100	99.259	Heterocephalus_glaber_female
ENSBTAG00000008527	SRSF6	94	81.173	ENSHGLG00100005043	SRSF6	93	78.571	Heterocephalus_glaber_male
ENSBTAG00000008527	SRSF6	58	88.462	ENSHCOG00000002740	srsf6a	75	65.417	Hippocampus_comes
ENSBTAG00000008527	SRSF6	58	93.590	ENSIPUG00000004776	-	72	76.233	Ictalurus_punctatus
ENSBTAG00000008527	SRSF6	100	99.259	ENSSTOG00000010866	SRSF6	100	99.259	Ictidomys_tridecemlineatus
ENSBTAG00000008527	SRSF6	56	94.301	ENSJJAG00000020690	Srsf6	90	93.264	Jaculus_jaculus
ENSBTAG00000008527	SRSF6	87	66.777	ENSKMAG00000011934	srsf6a	59	85.870	Kryptolebias_marmoratus
ENSBTAG00000008527	SRSF6	58	93.590	ENSLBEG00000007356	srsf6a	52	85.484	Labrus_bergylta
ENSBTAG00000008527	SRSF6	89	82.051	ENSLACG00000005466	SRSF6	54	91.848	Latimeria_chalumnae
ENSBTAG00000008527	SRSF6	69	96.234	ENSLAFG00000006682	SRSF6	88	96.476	Loxodonta_africana
ENSBTAG00000008527	SRSF6	100	99.259	ENSMFAG00000036925	SRSF6	100	99.259	Macaca_fascicularis
ENSBTAG00000008527	SRSF6	100	99.259	ENSMMUG00000006742	SRSF6	100	99.259	Macaca_mulatta
ENSBTAG00000008527	SRSF6	93	95.963	ENSMNEG00000038270	-	93	95.963	Macaca_nemestrina
ENSBTAG00000008527	SRSF6	100	97.778	ENSMNEG00000027392	-	100	97.778	Macaca_nemestrina
ENSBTAG00000008527	SRSF6	63	96.296	ENSMLEG00000031524	SRSF6	100	96.296	Mandrillus_leucophaeus
ENSBTAG00000008527	SRSF6	98	62.590	ENSMAMG00000017161	srsf6a	53	87.634	Mastacembelus_armatus
ENSBTAG00000008527	SRSF6	63	88.235	ENSMAMG00000023477	-	89	88.235	Mastacembelus_armatus
ENSBTAG00000008527	SRSF6	56	90.789	ENSMZEG00005008032	-	57	84.239	Maylandia_zebra
ENSBTAG00000008527	SRSF6	98	59.091	ENSMZEG00005020658	-	60	82.873	Maylandia_zebra
ENSBTAG00000008527	SRSF6	100	99.259	ENSMAUG00000019086	-	100	99.259	Mesocricetus_auratus
ENSBTAG00000008527	SRSF6	100	99.259	ENSMICG00000008537	SRSF6	100	99.259	Microcebus_murinus
ENSBTAG00000008527	SRSF6	57	96.410	ENSMOCG00000018738	Srsf6	91	96.891	Microtus_ochrogaster
ENSBTAG00000008527	SRSF6	58	93.590	ENSMMOG00000015241	-	78	91.566	Mola_mola
ENSBTAG00000008527	SRSF6	58	96.154	ENSMODG00000003107	SRSF6	94	86.687	Monodelphis_domestica
ENSBTAG00000008527	SRSF6	100	99.259	MGP_CAROLIEiJ_G0024606	Srsf6	100	99.259	Mus_caroli
ENSBTAG00000008527	SRSF6	100	99.259	ENSMUSG00000016921	Srsf6	100	99.259	Mus_musculus
ENSBTAG00000008527	SRSF6	100	99.259	MGP_PahariEiJ_G0026050	Srsf6	100	99.259	Mus_pahari
ENSBTAG00000008527	SRSF6	100	99.259	MGP_SPRETEiJ_G0025528	Srsf6	100	99.259	Mus_spretus
ENSBTAG00000008527	SRSF6	83	99.653	ENSMPUG00000017692	SRSF6	99	99.653	Mustela_putorius_furo
ENSBTAG00000008527	SRSF6	93	82.919	ENSMLUG00000016618	SRSF6	93	77.650	Myotis_lucifugus
ENSBTAG00000008527	SRSF6	100	99.259	ENSNGAG00000017560	Srsf6	100	99.259	Nannospalax_galili
ENSBTAG00000008527	SRSF6	58	94.872	ENSNBRG00000001846	-	52	87.634	Neolamprologus_brichardi
ENSBTAG00000008527	SRSF6	56	90.789	ENSNBRG00000014709	-	58	84.239	Neolamprologus_brichardi
ENSBTAG00000008527	SRSF6	100	99.259	ENSNLEG00000006524	SRSF6	100	99.259	Nomascus_leucogenys
ENSBTAG00000008527	SRSF6	58	96.154	ENSMEUG00000014615	SRSF6	62	95.745	Notamacropus_eugenii
ENSBTAG00000008527	SRSF6	75	96.525	ENSOPRG00000002017	-	100	96.525	Ochotona_princeps
ENSBTAG00000008527	SRSF6	100	99.259	ENSODEG00000016510	-	100	99.259	Octodon_degus
ENSBTAG00000008527	SRSF6	61	87.805	ENSONIG00000020247	-	53	84.783	Oreochromis_niloticus
ENSBTAG00000008527	SRSF6	84	81.046	ENSOCUG00000009785	-	98	84.459	Oryctolagus_cuniculus
ENSBTAG00000008527	SRSF6	74	57.480	ENSOCUG00000023999	-	70	62.570	Oryctolagus_cuniculus
ENSBTAG00000008527	SRSF6	58	93.590	ENSORLG00020017506	srsf6a	90	69.032	Oryzias_latipes_hni
ENSBTAG00000008527	SRSF6	94	96.615	ENSOGAG00000014468	SRSF6	93	96.894	Otolemur_garnettii
ENSBTAG00000008527	SRSF6	93	95.652	ENSOARG00000003117	SRSF6	93	95.652	Ovis_aries
ENSBTAG00000008527	SRSF6	100	96.821	ENSPPAG00000034327	-	100	96.821	Pan_paniscus
ENSBTAG00000008527	SRSF6	90	83.923	ENSPPAG00000043131	-	100	86.174	Pan_paniscus
ENSBTAG00000008527	SRSF6	100	99.130	ENSPPRG00000008917	SRSF6	100	99.130	Panthera_pardus
ENSBTAG00000008527	SRSF6	63	98.611	ENSPTIG00000019153	SRSF6	100	98.611	Panthera_tigris_altaica
ENSBTAG00000008527	SRSF6	100	99.259	ENSPTRG00000044686	-	100	99.259	Pan_troglodytes
ENSBTAG00000008527	SRSF6	90	83.923	ENSPTRG00000046274	-	100	86.174	Pan_troglodytes
ENSBTAG00000008527	SRSF6	100	99.259	ENSPANG00000035224	SRSF6	100	99.259	Papio_anubis
ENSBTAG00000008527	SRSF6	58	94.872	ENSPKIG00000015603	-	88	84.252	Paramormyrops_kingsleyae
ENSBTAG00000008527	SRSF6	59	76.250	ENSPKIG00000015703	-	95	60.403	Paramormyrops_kingsleyae
ENSBTAG00000008527	SRSF6	98	62.879	ENSPKIG00000018463	-	83	90.476	Paramormyrops_kingsleyae
ENSBTAG00000008527	SRSF6	89	71.935	ENSPMGG00000014963	srsf6a	55	89.130	Periophthalmus_magnuspinnatus
ENSBTAG00000008527	SRSF6	85	87.931	ENSPEMG00000022405	-	96	87.931	Peromyscus_maniculatus_bairdii
ENSBTAG00000008527	SRSF6	100	97.778	ENSPCIG00000003820	SRSF6	100	97.778	Phascolarctos_cinereus
ENSBTAG00000008527	SRSF6	58	93.590	ENSPFOG00000006437	srsf6a	50	83.158	Poecilia_formosa
ENSBTAG00000008527	SRSF6	87	65.409	ENSPLAG00000009243	srsf6a	80	82.677	Poecilia_latipinna
ENSBTAG00000008527	SRSF6	58	93.590	ENSPMEG00000006042	SRSF6	54	87.027	Poecilia_mexicana
ENSBTAG00000008527	SRSF6	59	92.405	ENSPREG00000001040	srsf6a	87	83.846	Poecilia_reticulata
ENSBTAG00000008527	SRSF6	100	97.110	ENSPPYG00000011019	SRSF6	100	97.110	Pongo_abelii
ENSBTAG00000008527	SRSF6	58	97.436	ENSPCAG00000010954	SRSF6	56	97.861	Procavia_capensis
ENSBTAG00000008527	SRSF6	100	99.259	ENSPCOG00000026364	SRSF6	100	99.259	Propithecus_coquereli
ENSBTAG00000008527	SRSF6	94	96.296	ENSPVAG00000015232	SRSF6	93	96.273	Pteropus_vampyrus
ENSBTAG00000008527	SRSF6	58	94.872	ENSPNYG00000011272	-	51	87.634	Pundamilia_nyererei
ENSBTAG00000008527	SRSF6	56	90.789	ENSPNYG00000004944	-	58	84.239	Pundamilia_nyererei
ENSBTAG00000008527	SRSF6	59	93.750	ENSPNAG00000023179	-	94	82.677	Pygocentrus_nattereri
ENSBTAG00000008527	SRSF6	94	96.914	ENSRNOG00000006380	Srsf6	94	96.894	Rattus_norvegicus
ENSBTAG00000008527	SRSF6	100	95.942	ENSRBIG00000041414	SRSF6	100	95.942	Rhinopithecus_bieti
ENSBTAG00000008527	SRSF6	100	99.259	ENSRROG00000029989	SRSF6	100	99.259	Rhinopithecus_roxellana
ENSBTAG00000008527	SRSF6	100	99.259	ENSSBOG00000033708	-	100	99.259	Saimiri_boliviensis_boliviensis
ENSBTAG00000008527	SRSF6	93	69.782	ENSSBOG00000034078	-	54	76.243	Saimiri_boliviensis_boliviensis
ENSBTAG00000008527	SRSF6	58	96.154	ENSSHAG00000012805	SRSF6	94	86.687	Sarcophilus_harrisii
ENSBTAG00000008527	SRSF6	55	94.595	ENSSFOG00015015169	SRSF6	60	89.130	Scleropages_formosus
ENSBTAG00000008527	SRSF6	89	64.985	ENSSFOG00015019681	-	53	81.959	Scleropages_formosus
ENSBTAG00000008527	SRSF6	59	91.250	ENSSMAG00000014861	-	95	67.188	Scophthalmus_maximus
ENSBTAG00000008527	SRSF6	56	89.474	ENSSMAG00000017447	-	55	80.435	Scophthalmus_maximus
ENSBTAG00000008527	SRSF6	63	88.235	ENSSDUG00000011036	-	90	88.235	Seriola_dumerili
ENSBTAG00000008527	SRSF6	98	61.871	ENSSDUG00000016097	srsf6a	53	87.634	Seriola_dumerili
ENSBTAG00000008527	SRSF6	98	62.590	ENSSLDG00000022841	srsf6a	54	87.634	Seriola_lalandi_dorsalis
ENSBTAG00000008527	SRSF6	63	88.235	ENSSLDG00000014858	-	90	88.235	Seriola_lalandi_dorsalis
ENSBTAG00000008527	SRSF6	75	96.911	ENSSARG00000001602	SRSF6	100	96.911	Sorex_araneus
ENSBTAG00000008527	SRSF6	100	96.296	ENSSPUG00000004967	SRSF6	100	96.296	Sphenodon_punctatus
ENSBTAG00000008527	SRSF6	63	85.882	ENSSPAG00000021913	-	86	85.882	Stegastes_partitus
ENSBTAG00000008527	SRSF6	98	62.590	ENSSPAG00000002362	srsf6a	67	86.243	Stegastes_partitus
ENSBTAG00000008527	SRSF6	100	98.841	ENSSSCG00000007362	SRSF6	100	98.841	Sus_scrofa
ENSBTAG00000008527	SRSF6	93	84.615	ENSTGUG00000003455	SRSF6	93	84.615	Taeniopygia_guttata
ENSBTAG00000008527	SRSF6	59	93.750	ENSTRUG00000021397	-	87	93.750	Takifugu_rubripes
ENSBTAG00000008527	SRSF6	87	70.627	ENSTNIG00000001692	srsf6a	57	86.022	Tetraodon_nigroviridis
ENSBTAG00000008527	SRSF6	85	93.151	ENSTBEG00000013448	SRSF6	92	93.426	Tupaia_belangeri
ENSBTAG00000008527	SRSF6	75	98.842	ENSTTRG00000015410	SRSF6	100	98.842	Tursiops_truncatus
ENSBTAG00000008527	SRSF6	100	100.000	ENSUAMG00000003559	SRSF6	100	100.000	Ursus_americanus
ENSBTAG00000008527	SRSF6	63	98.611	ENSUMAG00000001154	SRSF6	100	98.611	Ursus_maritimus
ENSBTAG00000008527	SRSF6	83	100.000	ENSVPAG00000003016	SRSF6	83	100.000	Vicugna_pacos
ENSBTAG00000008527	SRSF6	100	79.259	ENSVVUG00000019276	-	100	79.259	Vulpes_vulpes
ENSBTAG00000008527	SRSF6	58	93.590	ENSXMAG00000021849	srsf6a	55	86.413	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000380	alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0006376	mRNA splice site selection	-	ISS	Process
GO:0010837	regulation of keratinocyte proliferation	-	ISS	Process
GO:0016607	nuclear speck	-	ISS	Component
GO:0036002	pre-mRNA binding	-	ISS	Function
GO:0045617	negative regulation of keratinocyte differentiation	-	ISS	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISS	Process
GO:0061041	regulation of wound healing	-	ISS	Process