EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000008578 (Gene tree)
Gene ID: 613634
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 10900 bases
Position: chr7:4882773-4893672
Accession: 31056
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000011312	LSM	PF01423.22	1.1e-16	1	1
ENSBTAP00000065542	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000085767	-	420	-	ENSBTAP00000065542	139 (aa)	-	UPI0000001C1F
ENSBTAT00000011312	-	1011	-	ENSBTAP00000011312	139 (aa)	-	Q3ZBK6

Gene Model

Click here to download ENSBTAG00000008578's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03018	RNA degradation	KEGG
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000008578's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000008578	LSM4	71	31.068	ENSBTAG00000021262	SNRPD3	56	34.722
ENSBTAG00000008578	LSM4	70	32.000	ENSBTAG00000005634	LSM2	82	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000008578	LSM4	100	100.000	ENSG00000130520	LSM4	100	100.000	Homo_sapiens
ENSBTAG00000008578	LSM4	99	73.510	ENSAPOG00000005643	lsm4	58	98.864	Acanthochromis_polyacanthus
ENSBTAG00000008578	LSM4	100	100.000	ENSAMEG00000011162	LSM4	95	100.000	Ailuropoda_melanoleuca
ENSBTAG00000008578	LSM4	99	77.622	ENSAOCG00000006414	lsm4	59	98.864	Amphiprion_ocellaris
ENSBTAG00000008578	LSM4	99	75.000	ENSAPEG00000006238	lsm4	59	98.864	Amphiprion_percula
ENSBTAG00000008578	LSM4	71	96.970	ENSATEG00000016559	lsm4	58	98.864	Anabas_testudineus
ENSBTAG00000008578	LSM4	100	100.000	ENSANAG00000034659	LSM4	100	100.000	Aotus_nancymaae
ENSBTAG00000008578	LSM4	79	83.871	ENSACLG00000022738	lsm4	60	98.864	Astatotilapia_calliptera
ENSBTAG00000008578	LSM4	99	84.058	ENSAMXG00000016932	lsm4	62	97.727	Astyanax_mexicanus
ENSBTAG00000008578	LSM4	60	75.904	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSBTAG00000008578	LSM4	100	100.000	ENSCJAG00000014171	LSM4	100	100.000	Callithrix_jacchus
ENSBTAG00000008578	LSM4	99	100.000	ENSCAFG00000014900	LSM4	90	100.000	Canis_familiaris
ENSBTAG00000008578	LSM4	100	100.000	ENSCAFG00020012137	LSM4	100	100.000	Canis_lupus_dingo
ENSBTAG00000008578	LSM4	100	100.000	ENSCHIG00000010928	LSM4	92	100.000	Capra_hircus
ENSBTAG00000008578	LSM4	100	99.281	ENSTSYG00000030906	LSM4	100	99.281	Carlito_syrichta
ENSBTAG00000008578	LSM4	100	97.842	ENSCAPG00000014140	LSM4	100	97.842	Cavia_aperea
ENSBTAG00000008578	LSM4	100	97.842	ENSCPOG00000024117	LSM4	100	97.842	Cavia_porcellus
ENSBTAG00000008578	LSM4	100	100.000	ENSCCAG00000036308	LSM4	100	100.000	Cebus_capucinus
ENSBTAG00000008578	LSM4	100	100.000	ENSCATG00000029311	LSM4	100	100.000	Cercocebus_atys
ENSBTAG00000008578	LSM4	100	96.403	ENSCLAG00000010828	LSM4	100	96.403	Chinchilla_lanigera
ENSBTAG00000008578	LSM4	100	100.000	ENSCSAG00000005370	LSM4	100	100.000	Chlorocebus_sabaeus
ENSBTAG00000008578	LSM4	100	82.014	ENSCPBG00000012925	LSM4	100	89.928	Chrysemys_picta_bellii
ENSBTAG00000008578	LSM4	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSBTAG00000008578	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSBTAG00000008578	LSM4	100	100.000	ENSCANG00000043686	LSM4	100	100.000	Colobus_angolensis_palliatus
ENSBTAG00000008578	LSM4	100	95.683	ENSCGRG00001014436	Lsm4	100	95.683	Cricetulus_griseus_chok1gshd
ENSBTAG00000008578	LSM4	99	95.652	ENSCGRG00000009398	Lsm4	100	95.652	Cricetulus_griseus_crigri
ENSBTAG00000008578	LSM4	70	95.876	ENSCSEG00000016127	lsm4	62	97.727	Cynoglossus_semilaevis
ENSBTAG00000008578	LSM4	88	74.797	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSBTAG00000008578	LSM4	99	77.536	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSBTAG00000008578	LSM4	97	78.723	ENSDARG00000023852	lsm4	62	98.864	Danio_rerio
ENSBTAG00000008578	LSM4	100	97.842	ENSDORG00000024225	Lsm4	100	97.842	Dipodomys_ordii
ENSBTAG00000008578	LSM4	70	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSBTAG00000008578	LSM4	89	98.387	ENSETEG00000007762	-	100	98.387	Echinops_telfairi
ENSBTAG00000008578	LSM4	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSBTAG00000008578	LSM4	100	100.000	ENSECAG00000010141	LSM4	57	100.000	Equus_caballus
ENSBTAG00000008578	LSM4	95	84.328	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSBTAG00000008578	LSM4	100	100.000	ENSFCAG00000040580	LSM4	100	100.000	Felis_catus
ENSBTAG00000008578	LSM4	100	81.295	ENSFALG00000009478	LSM4	100	89.928	Ficedula_albicollis
ENSBTAG00000008578	LSM4	99	97.101	ENSFDAG00000010124	LSM4	100	97.101	Fukomys_damarensis
ENSBTAG00000008578	LSM4	70	96.907	ENSGMOG00000007729	lsm4	60	98.864	Gadus_morhua
ENSBTAG00000008578	LSM4	100	81.295	ENSGALG00000003385	LSM4	100	89.928	Gallus_gallus
ENSBTAG00000008578	LSM4	79	83.065	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSBTAG00000008578	LSM4	68	97.895	ENSGACG00000008140	lsm4	59	98.864	Gasterosteus_aculeatus
ENSBTAG00000008578	LSM4	100	82.014	ENSGAGG00000017812	LSM4	100	89.928	Gopherus_agassizii
ENSBTAG00000008578	LSM4	100	100.000	ENSGGOG00000012914	-	100	100.000	Gorilla_gorilla
ENSBTAG00000008578	LSM4	100	97.122	ENSHGLG00000006568	LSM4	100	97.122	Heterocephalus_glaber_female
ENSBTAG00000008578	LSM4	67	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSBTAG00000008578	LSM4	99	77.372	ENSHCOG00000008819	lsm4	62	98.864	Hippocampus_comes
ENSBTAG00000008578	LSM4	99	84.058	ENSIPUG00000005368	Lsm4	62	98.864	Ictalurus_punctatus
ENSBTAG00000008578	LSM4	100	100.000	ENSSTOG00000016494	LSM4	100	100.000	Ictidomys_tridecemlineatus
ENSBTAG00000008578	LSM4	100	97.122	ENSJJAG00000017420	Lsm4	100	97.122	Jaculus_jaculus
ENSBTAG00000008578	LSM4	62	97.674	ENSKMAG00000005073	lsm4	61	97.727	Kryptolebias_marmoratus
ENSBTAG00000008578	LSM4	71	96.970	ENSLBEG00000027930	lsm4	59	98.864	Labrus_bergylta
ENSBTAG00000008578	LSM4	99	83.212	ENSLACG00000015861	LSM4	98	83.212	Latimeria_chalumnae
ENSBTAG00000008578	LSM4	93	83.721	ENSLOCG00000002025	lsm4	62	97.727	Lepisosteus_oculatus
ENSBTAG00000008578	LSM4	100	98.561	ENSLAFG00000017459	LSM4	100	98.561	Loxodonta_africana
ENSBTAG00000008578	LSM4	100	100.000	ENSMFAG00000031194	LSM4	100	100.000	Macaca_fascicularis
ENSBTAG00000008578	LSM4	100	100.000	ENSMMUG00000004405	LSM4	100	100.000	Macaca_mulatta
ENSBTAG00000008578	LSM4	100	100.000	ENSMNEG00000042899	LSM4	100	100.000	Macaca_nemestrina
ENSBTAG00000008578	LSM4	100	100.000	ENSMLEG00000027948	LSM4	100	100.000	Mandrillus_leucophaeus
ENSBTAG00000008578	LSM4	99	79.710	ENSMAMG00000006190	lsm4	62	98.864	Mastacembelus_armatus
ENSBTAG00000008578	LSM4	79	83.871	ENSMZEG00005016420	lsm4	60	98.864	Maylandia_zebra
ENSBTAG00000008578	LSM4	100	82.857	ENSMGAG00000004976	LSM4	100	89.928	Meleagris_gallopavo
ENSBTAG00000008578	LSM4	100	99.281	ENSMICG00000000222	LSM4	100	99.281	Microcebus_murinus
ENSBTAG00000008578	LSM4	100	96.403	ENSMOCG00000020861	Lsm4	100	96.403	Microtus_ochrogaster
ENSBTAG00000008578	LSM4	89	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSBTAG00000008578	LSM4	99	77.143	ENSMALG00000018159	lsm4	62	97.727	Monopterus_albus
ENSBTAG00000008578	LSM4	100	96.403	MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	Mus_caroli
ENSBTAG00000008578	LSM4	100	96.403	ENSMUSG00000031848	Lsm4	100	96.403	Mus_musculus
ENSBTAG00000008578	LSM4	100	96.403	MGP_PahariEiJ_G0021623	Lsm4	100	96.403	Mus_pahari
ENSBTAG00000008578	LSM4	100	96.403	MGP_SPRETEiJ_G0032276	Lsm4	100	96.403	Mus_spretus
ENSBTAG00000008578	LSM4	100	100.000	ENSMPUG00000015589	LSM4	100	100.000	Mustela_putorius_furo
ENSBTAG00000008578	LSM4	100	100.000	ENSMLUG00000004010	LSM4	100	100.000	Myotis_lucifugus
ENSBTAG00000008578	LSM4	100	96.403	ENSNGAG00000008644	Lsm4	100	96.403	Nannospalax_galili
ENSBTAG00000008578	LSM4	71	96.970	ENSNBRG00000022150	lsm4	54	98.864	Neolamprologus_brichardi
ENSBTAG00000008578	LSM4	89	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSBTAG00000008578	LSM4	89	93.548	ENSOPRG00000005575	LSM4	100	83.065	Ochotona_princeps
ENSBTAG00000008578	LSM4	100	97.122	ENSODEG00000020549	-	100	97.122	Octodon_degus
ENSBTAG00000008578	LSM4	100	87.050	ENSODEG00000004519	-	100	74.820	Octodon_degus
ENSBTAG00000008578	LSM4	100	73.381	ENSODEG00000011712	-	100	73.381	Octodon_degus
ENSBTAG00000008578	LSM4	79	83.871	ENSONIG00000012724	lsm4	60	98.864	Oreochromis_niloticus
ENSBTAG00000008578	LSM4	63	93.478	ENSOANG00000007434	LSM4	79	93.478	Ornithorhynchus_anatinus
ENSBTAG00000008578	LSM4	99	85.106	ENSORLG00000008391	lsm4	61	97.727	Oryzias_latipes
ENSBTAG00000008578	LSM4	99	72.848	ENSORLG00020014829	lsm4	61	97.727	Oryzias_latipes_hni
ENSBTAG00000008578	LSM4	99	85.106	ENSORLG00015010205	lsm4	61	97.727	Oryzias_latipes_hsok
ENSBTAG00000008578	LSM4	100	83.453	ENSOMEG00000003606	lsm4	61	97.727	Oryzias_melastigma
ENSBTAG00000008578	LSM4	72	99.000	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSBTAG00000008578	LSM4	86	100.000	ENSOARG00000012553	LSM4	94	100.000	Ovis_aries
ENSBTAG00000008578	LSM4	100	100.000	ENSPPAG00000044045	-	100	100.000	Pan_paniscus
ENSBTAG00000008578	LSM4	100	100.000	ENSPPRG00000018264	LSM4	100	100.000	Panthera_pardus
ENSBTAG00000008578	LSM4	99	100.000	ENSPTIG00000006306	LSM4	100	100.000	Panthera_tigris_altaica
ENSBTAG00000008578	LSM4	100	100.000	ENSPTRG00000031470	LSM4	100	100.000	Pan_troglodytes
ENSBTAG00000008578	LSM4	100	100.000	ENSPANG00000014399	LSM4	100	100.000	Papio_anubis
ENSBTAG00000008578	LSM4	99	81.752	ENSPKIG00000006154	lsm4	62	98.864	Paramormyrops_kingsleyae
ENSBTAG00000008578	LSM4	99	81.159	ENSPSIG00000012358	LSM4	100	89.855	Pelodiscus_sinensis
ENSBTAG00000008578	LSM4	100	96.403	ENSPEMG00000001358	Lsm4	100	96.403	Peromyscus_maniculatus_bairdii
ENSBTAG00000008578	LSM4	99	76.389	ENSPLAG00000016267	lsm4	62	98.864	Poecilia_latipinna
ENSBTAG00000008578	LSM4	99	78.571	ENSPMEG00000016378	lsm4	63	98.864	Poecilia_mexicana
ENSBTAG00000008578	LSM4	100	100.000	ENSPPYG00000009736	LSM4	100	100.000	Pongo_abelii
ENSBTAG00000008578	LSM4	89	98.387	ENSPCAG00000008513	LSM4	100	98.387	Procavia_capensis
ENSBTAG00000008578	LSM4	100	99.281	ENSPCOG00000019837	LSM4	100	99.281	Propithecus_coquereli
ENSBTAG00000008578	LSM4	100	100.000	ENSPVAG00000015383	LSM4	100	100.000	Pteropus_vampyrus
ENSBTAG00000008578	LSM4	79	83.871	ENSPNYG00000016794	lsm4	60	98.864	Pundamilia_nyererei
ENSBTAG00000008578	LSM4	96	83.582	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSBTAG00000008578	LSM4	100	96.403	ENSRNOG00000019572	Lsm4	100	96.403	Rattus_norvegicus
ENSBTAG00000008578	LSM4	100	100.000	ENSRBIG00000024717	LSM4	100	100.000	Rhinopithecus_bieti
ENSBTAG00000008578	LSM4	100	100.000	ENSRROG00000045706	LSM4	100	100.000	Rhinopithecus_roxellana
ENSBTAG00000008578	LSM4	60	40.860	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSBTAG00000008578	LSM4	90	100.000	ENSSBOG00000022455	LSM4	100	100.000	Saimiri_boliviensis_boliviensis
ENSBTAG00000008578	LSM4	100	96.403	ENSSHAG00000011559	LSM4	100	96.403	Sarcophilus_harrisii
ENSBTAG00000008578	LSM4	99	80.292	ENSSFOG00015021067	lsm4	62	98.864	Scleropages_formosus
ENSBTAG00000008578	LSM4	99	71.831	ENSSMAG00000021020	lsm4	95	72.535	Scophthalmus_maximus
ENSBTAG00000008578	LSM4	71	96.970	ENSSDUG00000009588	lsm4	53	98.864	Seriola_dumerili
ENSBTAG00000008578	LSM4	71	96.970	ENSSLDG00000006827	lsm4	52	98.864	Seriola_lalandi_dorsalis
ENSBTAG00000008578	LSM4	63	98.864	ENSSPUG00000010166	LSM4	57	98.864	Sphenodon_punctatus
ENSBTAG00000008578	LSM4	99	73.510	ENSSPAG00000011615	lsm4	58	98.864	Stegastes_partitus
ENSBTAG00000008578	LSM4	100	100.000	ENSSSCG00000034314	LSM4	100	100.000	Sus_scrofa
ENSBTAG00000008578	LSM4	79	81.452	ENSTRUG00000021737	lsm4	62	96.591	Takifugu_rubripes
ENSBTAG00000008578	LSM4	99	80.714	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSBTAG00000008578	LSM4	100	100.000	ENSUAMG00000000665	LSM4	100	100.000	Ursus_americanus
ENSBTAG00000008578	LSM4	100	100.000	ENSUMAG00000009013	LSM4	100	100.000	Ursus_maritimus
ENSBTAG00000008578	LSM4	100	99.281	ENSVVUG00000008136	LSM4	71	100.000	Vulpes_vulpes
ENSBTAG00000008578	LSM4	100	91.367	ENSXETG00000024933	lsm4	100	89.209	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0005634	nucleus	-	ISS	Component
GO:0005829	cytosol	-	IEA	Component
GO:0016020	membrane	-	IEA	Component
GO:0042731	PH domain binding	-	IEA	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISS	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component
GO:0120115	Lsm2-8 complex	-	IEA	Component