EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000008871 (Gene tree)
Gene ID: 493725
Gene Symbol: DDX4
Alias: -
Full Name: Bos taurus DEAD-box helicase 4 (DDX4)%2C transcript variant 2%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 65945 bases
Position: chr20:23358630-23424574
Accession: NM_001278643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000074513	DEAD	PF00270.29	3.2e-49	1	1
ENSBTAP00000057970	DEAD	PF00270.29	3.5e-49	1	1
ENSBTAP00000011682	DEAD	PF00270.29	3.8e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000071350	-	2376	XM_024981230	ENSBTAP00000057970	703 (aa)	XP_024836998	K0FD10
ENSBTAT00000011682	-	2445	XM_024981227	ENSBTAP00000011682	729 (aa)	XP_024836995	F1MYC6
ENSBTAT00000083844	-	2034	-	ENSBTAP00000074513	677 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000008871's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000008871's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000008871	DDX4	60	38.107	ENSBTAG00000046635	-	65	38.107
ENSBTAG00000008871	DDX4	52	32.778	ENSBTAG00000009067	DDX6	74	32.778
ENSBTAG00000008871	DDX4	55	30.534	ENSBTAG00000003570	DDX19A	81	30.534
ENSBTAG00000008871	DDX4	58	31.202	ENSBTAG00000016023	EIF4A3	90	31.202
ENSBTAG00000008871	DDX4	59	35.597	ENSBTAG00000021810	DDX23	51	35.597
ENSBTAG00000008871	DDX4	65	32.450	ENSBTAG00000006671	DDX27	57	32.450
ENSBTAG00000008871	DDX4	58	39.547	ENSBTAG00000009887	DDX17	76	38.650
ENSBTAG00000008871	DDX4	55	36.939	ENSBTAG00000020563	DDX59	58	36.939
ENSBTAG00000008871	DDX4	58	34.015	ENSBTAG00000019608	DDX47	82	34.015
ENSBTAG00000008871	DDX4	63	31.364	ENSBTAG00000027319	-	51	32.231
ENSBTAG00000008871	DDX4	55	30.326	ENSBTAG00000020714	DDX19B	76	30.534
ENSBTAG00000008871	DDX4	51	33.983	ENSBTAG00000007266	DDX55	57	32.571
ENSBTAG00000008871	DDX4	59	30.118	ENSBTAG00000004266	DDX25	83	30.118
ENSBTAG00000008871	DDX4	59	38.272	ENSBTAG00000015187	DDX41	67	37.412
ENSBTAG00000008871	DDX4	59	39.506	ENSBTAG00000018423	DDX5	71	37.773
ENSBTAG00000008871	DDX4	65	35.870	ENSBTAG00000021058	DDX42	56	37.681
ENSBTAG00000008871	DDX4	64	53.047	ENSBTAG00000035907	DDX3X	74	50.955
ENSBTAG00000008871	DDX4	59	34.719	ENSBTAG00000010313	DDX52	66	34.230
ENSBTAG00000008871	DDX4	58	39.241	ENSBTAG00000021814	-	59	39.241
ENSBTAG00000008871	DDX4	63	31.364	ENSBTAG00000015077	-	53	32.231
ENSBTAG00000008871	DDX4	52	34.605	ENSBTAG00000000811	DDX49	72	34.605

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000008871	DDX4	100	91.084	ENSG00000152670	DDX4	100	91.084	Homo_sapiens
ENSBTAG00000008871	DDX4	59	62.155	ENSAPOG00000021394	ddx4	100	62.155	Acanthochromis_polyacanthus
ENSBTAG00000008871	DDX4	100	94.787	ENSAMEG00000013960	DDX4	100	94.787	Ailuropoda_melanoleuca
ENSBTAG00000008871	DDX4	59	67.669	ENSACIG00000017623	ddx4	100	67.669	Amphilophus_citrinellus
ENSBTAG00000008871	DDX4	59	67.419	ENSAPEG00000008490	ddx4	100	67.419	Amphiprion_percula
ENSBTAG00000008871	DDX4	59	71.178	ENSATEG00000011704	ddx4	100	71.178	Anabas_testudineus
ENSBTAG00000008871	DDX4	65	81.279	ENSAPLG00000011662	DDX4	98	81.279	Anas_platyrhynchos
ENSBTAG00000008871	DDX4	100	66.527	ENSACAG00000014951	DDX4	100	65.406	Anolis_carolinensis
ENSBTAG00000008871	DDX4	100	89.712	ENSANAG00000029060	DDX4	100	89.712	Aotus_nancymaae
ENSBTAG00000008871	DDX4	72	67.762	ENSACLG00000007422	ddx4	81	67.755	Astatotilapia_calliptera
ENSBTAG00000008871	DDX4	76	68.798	ENSAMXG00000010288	ddx4	99	57.402	Astyanax_mexicanus
ENSBTAG00000008871	DDX4	67	41.328	WBGene00001600	glh-3	65	41.328	Caenorhabditis_elegans
ENSBTAG00000008871	DDX4	68	42.857	WBGene00001598	glh-1	60	43.573	Caenorhabditis_elegans
ENSBTAG00000008871	DDX4	100	88.752	ENSCJAG00000001951	DDX4	100	88.752	Callithrix_jacchus
ENSBTAG00000008871	DDX4	100	94.102	ENSCAFG00000006875	DDX4	100	94.102	Canis_familiaris
ENSBTAG00000008871	DDX4	100	89.616	ENSCAFG00020024295	DDX4	100	88.051	Canis_lupus_dingo
ENSBTAG00000008871	DDX4	100	98.217	ENSCHIG00000015567	DDX4	100	98.217	Capra_hircus
ENSBTAG00000008871	DDX4	100	87.791	ENSTSYG00000011848	DDX4	100	87.929	Carlito_syrichta
ENSBTAG00000008871	DDX4	100	69.863	ENSCPOG00000004327	DDX4	100	69.178	Cavia_porcellus
ENSBTAG00000008871	DDX4	100	89.986	ENSCCAG00000028725	DDX4	100	89.986	Cebus_capucinus
ENSBTAG00000008871	DDX4	100	92.044	ENSCATG00000044303	DDX4	100	92.044	Cercocebus_atys
ENSBTAG00000008871	DDX4	100	88.336	ENSCLAG00000005386	DDX4	100	88.336	Chinchilla_lanigera
ENSBTAG00000008871	DDX4	100	91.168	ENSCSAG00000016336	DDX4	100	91.168	Chlorocebus_sabaeus
ENSBTAG00000008871	DDX4	100	81.207	ENSCHOG00000000200	DDX4	100	81.207	Choloepus_hoffmanni
ENSBTAG00000008871	DDX4	87	81.785	ENSCPBG00000026547	DDX4	100	84.333	Chrysemys_picta_bellii
ENSBTAG00000008871	DDX4	69	57.143	ENSCING00000001412	-	82	58.452	Ciona_intestinalis
ENSBTAG00000008871	DDX4	80	54.078	ENSCSAVG00000004304	-	75	59.834	Ciona_savignyi
ENSBTAG00000008871	DDX4	100	82.990	ENSCANG00000003129	DDX4	100	82.990	Colobus_angolensis_palliatus
ENSBTAG00000008871	DDX4	100	90.909	ENSCGRG00001014961	Ddx4	100	90.483	Cricetulus_griseus_chok1gshd
ENSBTAG00000008871	DDX4	100	90.909	ENSCGRG00000001251	Ddx4	100	90.483	Cricetulus_griseus_crigri
ENSBTAG00000008871	DDX4	71	62.762	ENSCSEG00000006039	ddx4	76	60.271	Cynoglossus_semilaevis
ENSBTAG00000008871	DDX4	73	72.154	ENSDARG00000014373	ddx4	96	58.726	Danio_rerio
ENSBTAG00000008871	DDX4	94	90.781	ENSDNOG00000011658	DDX4	100	90.058	Dasypus_novemcinctus
ENSBTAG00000008871	DDX4	100	88.936	ENSDORG00000012201	Ddx4	100	90.496	Dipodomys_ordii
ENSBTAG00000008871	DDX4	71	52.165	FBgn0283442	vas	71	51.521	Drosophila_melanogaster
ENSBTAG00000008871	DDX4	69	92.262	ENSETEG00000001835	DDX4	71	92.262	Echinops_telfairi
ENSBTAG00000008871	DDX4	62	53.456	ENSEBUG00000003290	-	84	53.456	Eptatretus_burgeri
ENSBTAG00000008871	DDX4	100	93.944	ENSEASG00005012143	DDX4	100	93.944	Equus_asinus_asinus
ENSBTAG00000008871	DDX4	100	93.944	ENSECAG00000023616	DDX4	100	93.944	Equus_caballus
ENSBTAG00000008871	DDX4	79	96.286	ENSEEUG00000012462	DDX4	79	96.286	Erinaceus_europaeus
ENSBTAG00000008871	DDX4	72	69.980	ENSELUG00000017328	ddx4	79	67.500	Esox_lucius
ENSBTAG00000008871	DDX4	100	94.102	ENSFCAG00000012560	DDX4	100	94.102	Felis_catus
ENSBTAG00000008871	DDX4	73	72.581	ENSFALG00000010910	DDX4	100	54.897	Ficedula_albicollis
ENSBTAG00000008871	DDX4	100	88.478	ENSFDAG00000003703	DDX4	100	88.478	Fukomys_damarensis
ENSBTAG00000008871	DDX4	74	66.467	ENSFHEG00000019935	ddx4	78	66.802	Fundulus_heteroclitus
ENSBTAG00000008871	DDX4	91	60.480	ENSGALG00000014713	DDX4	79	64.973	Gallus_gallus
ENSBTAG00000008871	DDX4	68	70.194	ENSGAFG00000016509	ddx4	79	65.637	Gambusia_affinis
ENSBTAG00000008871	DDX4	72	69.262	ENSGACG00000015323	ddx4	100	69.262	Gasterosteus_aculeatus
ENSBTAG00000008871	DDX4	100	90.947	ENSGGOG00000002439	DDX4	100	90.947	Gorilla_gorilla
ENSBTAG00000008871	DDX4	73	66.599	ENSHBUG00000001897	ddx4	82	67.418	Haplochromis_burtoni
ENSBTAG00000008871	DDX4	100	81.081	ENSHGLG00000003594	DDX4	100	81.081	Heterocephalus_glaber_female
ENSBTAG00000008871	DDX4	61	75.604	ENSHGLG00100001008	-	90	75.362	Heterocephalus_glaber_male
ENSBTAG00000008871	DDX4	77	65.010	ENSHCOG00000018337	ddx4	86	64.875	Hippocampus_comes
ENSBTAG00000008871	DDX4	76	69.455	ENSIPUG00000001845	ddx4	84	69.305	Ictalurus_punctatus
ENSBTAG00000008871	DDX4	100	93.750	ENSSTOG00000021044	DDX4	100	93.750	Ictidomys_tridecemlineatus
ENSBTAG00000008871	DDX4	100	89.631	ENSJJAG00000015867	Ddx4	100	89.631	Jaculus_jaculus
ENSBTAG00000008871	DDX4	74	69.076	ENSKMAG00000012439	ddx4	80	66.409	Kryptolebias_marmoratus
ENSBTAG00000008871	DDX4	74	67.265	ENSLBEG00000019504	ddx4	94	57.342	Labrus_bergylta
ENSBTAG00000008871	DDX4	72	73.251	ENSLOCG00000010887	ddx4	100	73.251	Lepisosteus_oculatus
ENSBTAG00000008871	DDX4	100	92.045	ENSLAFG00000005900	DDX4	100	92.045	Loxodonta_africana
ENSBTAG00000008871	DDX4	100	91.907	ENSMFAG00000040186	DDX4	100	91.907	Macaca_fascicularis
ENSBTAG00000008871	DDX4	100	91.907	ENSMMUG00000017386	DDX4	100	91.907	Macaca_mulatta
ENSBTAG00000008871	DDX4	100	91.907	ENSMNEG00000033343	DDX4	100	91.907	Macaca_nemestrina
ENSBTAG00000008871	DDX4	96	85.735	ENSMLEG00000038233	DDX4	100	85.735	Mandrillus_leucophaeus
ENSBTAG00000008871	DDX4	59	67.168	ENSMAMG00000003574	ddx4	100	67.168	Mastacembelus_armatus
ENSBTAG00000008871	DDX4	72	67.762	ENSMZEG00005019116	ddx4	84	67.755	Maylandia_zebra
ENSBTAG00000008871	DDX4	100	80.882	ENSMAUG00000019873	Ddx4	100	80.882	Mesocricetus_auratus
ENSBTAG00000008871	DDX4	97	74.848	ENSMICG00000028132	-	98	76.324	Microcebus_murinus
ENSBTAG00000008871	DDX4	100	92.192	ENSMICG00000008994	-	100	92.192	Microcebus_murinus
ENSBTAG00000008871	DDX4	100	90.767	ENSMOCG00000013250	Ddx4	100	90.341	Microtus_ochrogaster
ENSBTAG00000008871	DDX4	72	66.939	ENSMMOG00000004689	ddx4	86	66.939	Mola_mola
ENSBTAG00000008871	DDX4	100	85.109	ENSMODG00000019511	DDX4	100	83.060	Monodelphis_domestica
ENSBTAG00000008871	DDX4	100	89.504	MGP_CAROLIEiJ_G0018893	Ddx4	100	89.078	Mus_caroli
ENSBTAG00000008871	DDX4	100	90.355	ENSMUSG00000021758	Ddx4	100	89.929	Mus_musculus
ENSBTAG00000008871	DDX4	100	90.057	MGP_PahariEiJ_G0015964	Ddx4	100	89.631	Mus_pahari
ENSBTAG00000008871	DDX4	100	90.638	MGP_SPRETEiJ_G0019772	Ddx4	100	90.213	Mus_spretus
ENSBTAG00000008871	DDX4	100	95.205	ENSMPUG00000007596	DDX4	100	95.205	Mustela_putorius_furo
ENSBTAG00000008871	DDX4	100	83.902	ENSMLUG00000001189	DDX4	100	83.902	Myotis_lucifugus
ENSBTAG00000008871	DDX4	100	88.356	ENSNGAG00000013259	Ddx4	100	88.356	Nannospalax_galili
ENSBTAG00000008871	DDX4	72	65.112	ENSNBRG00000014442	ddx4	100	59.753	Neolamprologus_brichardi
ENSBTAG00000008871	DDX4	100	88.615	ENSNLEG00000001662	DDX4	100	88.203	Nomascus_leucogenys
ENSBTAG00000008871	DDX4	72	82.508	ENSMEUG00000007757	DDX4	71	77.888	Notamacropus_eugenii
ENSBTAG00000008871	DDX4	75	69.581	ENSOPRG00000008071	DDX4	100	69.581	Ochotona_princeps
ENSBTAG00000008871	DDX4	100	81.650	ENSODEG00000003839	-	100	81.650	Octodon_degus
ENSBTAG00000008871	DDX4	100	86.968	ENSODEG00000016951	-	100	86.968	Octodon_degus
ENSBTAG00000008871	DDX4	70	67.857	ENSONIG00000012063	ddx4	98	67.797	Oreochromis_niloticus
ENSBTAG00000008871	DDX4	55	86.290	ENSOANG00000004888	-	94	86.523	Ornithorhynchus_anatinus
ENSBTAG00000008871	DDX4	100	90.123	ENSOCUG00000008597	DDX4	100	90.123	Oryctolagus_cuniculus
ENSBTAG00000008871	DDX4	72	69.184	ENSORLG00000020672	ddx4	83	66.151	Oryzias_latipes
ENSBTAG00000008871	DDX4	69	71.215	ENSORLG00020014206	ddx4	83	66.409	Oryzias_latipes_hni
ENSBTAG00000008871	DDX4	69	71.215	ENSORLG00015016600	ddx4	83	66.538	Oryzias_latipes_hsok
ENSBTAG00000008871	DDX4	76	66.019	ENSOMEG00000010651	ddx4	82	67.535	Oryzias_melastigma
ENSBTAG00000008871	DDX4	100	92.066	ENSOGAG00000007588	DDX4	100	92.066	Otolemur_garnettii
ENSBTAG00000008871	DDX4	100	97.541	ENSOARG00000007644	DDX4	100	97.541	Ovis_aries
ENSBTAG00000008871	DDX4	100	91.084	ENSPPAG00000033915	DDX4	100	91.084	Pan_paniscus
ENSBTAG00000008871	DDX4	100	92.896	ENSPPRG00000011417	DDX4	100	92.896	Panthera_pardus
ENSBTAG00000008871	DDX4	100	93.278	ENSPTIG00000007748	DDX4	100	93.278	Panthera_tigris_altaica
ENSBTAG00000008871	DDX4	100	91.084	ENSPTRG00000016884	DDX4	100	91.084	Pan_troglodytes
ENSBTAG00000008871	DDX4	100	91.495	ENSPANG00000010945	DDX4	100	91.495	Papio_anubis
ENSBTAG00000008871	DDX4	89	77.243	ENSPSIG00000017179	DDX4	99	76.404	Pelodiscus_sinensis
ENSBTAG00000008871	DDX4	55	63.710	ENSPMGG00000015642	ddx4	93	63.710	Periophthalmus_magnuspinnatus
ENSBTAG00000008871	DDX4	100	89.915	ENSPEMG00000010086	Ddx4	100	89.489	Peromyscus_maniculatus_bairdii
ENSBTAG00000008871	DDX4	93	85.624	ENSPCIG00000024758	DDX4	100	83.136	Phascolarctos_cinereus
ENSBTAG00000008871	DDX4	68	70.779	ENSPFOG00000018842	ddx4	98	56.822	Poecilia_formosa
ENSBTAG00000008871	DDX4	68	70.996	ENSPLAG00000020726	ddx4	79	66.023	Poecilia_latipinna
ENSBTAG00000008871	DDX4	68	70.779	ENSPMEG00000002976	ddx4	98	56.822	Poecilia_mexicana
ENSBTAG00000008871	DDX4	68	70.410	ENSPREG00000017840	ddx4	82	65.637	Poecilia_reticulata
ENSBTAG00000008871	DDX4	100	91.495	ENSPPYG00000015472	DDX4	100	91.495	Pongo_abelii
ENSBTAG00000008871	DDX4	100	78.052	ENSPCAG00000002675	DDX4	100	78.052	Procavia_capensis
ENSBTAG00000008871	DDX4	97	93.617	ENSPVAG00000002448	DDX4	100	93.617	Pteropus_vampyrus
ENSBTAG00000008871	DDX4	72	67.551	ENSPNYG00000022212	ddx4	84	67.551	Pundamilia_nyererei
ENSBTAG00000008871	DDX4	64	73.843	ENSPNAG00000003686	ddx4	97	56.899	Pygocentrus_nattereri
ENSBTAG00000008871	DDX4	96	90.754	ENSRNOG00000026686	Ddx4	99	90.469	Rattus_norvegicus
ENSBTAG00000008871	DDX4	100	91.632	ENSRBIG00000028795	DDX4	100	91.632	Rhinopithecus_bieti
ENSBTAG00000008871	DDX4	100	91.495	ENSRROG00000045392	DDX4	100	91.495	Rhinopithecus_roxellana
ENSBTAG00000008871	DDX4	71	46.263	YPL119C	DBP1	75	48.195	Saccharomyces_cerevisiae
ENSBTAG00000008871	DDX4	100	90.123	ENSSBOG00000035231	DDX4	100	90.123	Saimiri_boliviensis_boliviensis
ENSBTAG00000008871	DDX4	100	84.605	ENSSHAG00000009132	DDX4	100	82.561	Sarcophilus_harrisii
ENSBTAG00000008871	DDX4	73	71.341	ENSSFOG00015006531	ddx4	80	68.714	Scleropages_formosus
ENSBTAG00000008871	DDX4	71	67.355	ENSSMAG00000009800	ddx4	80	64.990	Scophthalmus_maximus
ENSBTAG00000008871	DDX4	73	68.623	ENSSDUG00000022015	ddx4	81	66.667	Seriola_dumerili
ENSBTAG00000008871	DDX4	59	69.674	ENSSLDG00000015312	ddx4	100	69.674	Seriola_lalandi_dorsalis
ENSBTAG00000008871	DDX4	100	80.796	ENSSARG00000004206	DDX4	100	80.796	Sorex_araneus
ENSBTAG00000008871	DDX4	68	86.275	ENSSPUG00000007260	DDX4	79	86.275	Sphenodon_punctatus
ENSBTAG00000008871	DDX4	59	68.000	ENSSPAG00000014307	ddx4	100	68.000	Stegastes_partitus
ENSBTAG00000008871	DDX4	100	95.885	ENSSSCG00000016913	DDX4	100	95.885	Sus_scrofa
ENSBTAG00000008871	DDX4	65	76.256	ENSTGUG00000002548	DDX4	100	76.256	Taeniopygia_guttata
ENSBTAG00000008871	DDX4	76	58.027	ENSTNIG00000014474	ddx4	96	56.137	Tetraodon_nigroviridis
ENSBTAG00000008871	DDX4	87	75.768	ENSTBEG00000003569	DDX4	87	75.768	Tupaia_belangeri
ENSBTAG00000008871	DDX4	100	89.438	ENSTTRG00000009316	DDX4	100	88.340	Tursiops_truncatus
ENSBTAG00000008871	DDX4	100	89.616	ENSUAMG00000023028	DDX4	100	87.909	Ursus_americanus
ENSBTAG00000008871	DDX4	100	89.616	ENSUMAG00000009291	DDX4	100	87.909	Ursus_maritimus
ENSBTAG00000008871	DDX4	99	92.244	ENSVPAG00000009491	DDX4	99	92.659	Vicugna_pacos
ENSBTAG00000008871	DDX4	100	94.595	ENSVVUG00000021369	DDX4	100	94.595	Vulpes_vulpes
ENSBTAG00000008871	DDX4	93	60.124	ENSXETG00000030832	DDX4	79	66.027	Xenopus_tropicalis
ENSBTAG00000008871	DDX4	68	71.274	ENSXMAG00000009677	ddx4	98	57.571	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	ISS	Component
GO:0007140	male meiotic nuclear division	-	ISS	Process
GO:0007141	male meiosis I	-	ISS	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0007283	spermatogenesis	-	ISS	Process
GO:0010529	negative regulation of transposition	-	ISS	Process
GO:0016887	ATPase activity	-	ISS	Function
GO:0030154	cell differentiation	-	IEA	Process
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0033391	chromatoid body	10781947.	IDA	Component
GO:0034587	piRNA metabolic process	-	ISS	Process
GO:0043046	DNA methylation involved in gamete generation	-	ISS	Process
GO:0048471	perinuclear region of cytoplasm	-	IEA	Component
GO:0071546	pi-body	-	ISS	Component
GO:0071547	piP-body	-	ISS	Component
GO:1990511	piRNA biosynthetic process	-	ISS	Process