EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000009435 (Gene tree)
Gene ID: 513598
Gene Symbol: SMG5
Alias: -
Full Name: Bos taurus SMG5%2C nonsense mediated mRNA decay factor (SMG5)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 27756 bases
Position: chr3:14517240-14544995
Accession: NM_001083679
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000063171	EST1	PF10374.9	1e-23	1	1
ENSBTAP00000012415	EST1	PF10374.9	1e-23	1	1
ENSBTAP00000012415	EST1_DNA_bind	PF10373.9	2.4e-40	1	2
ENSBTAP00000012415	EST1_DNA_bind	PF10373.9	2.4e-40	2	2
ENSBTAP00000063171	EST1_DNA_bind	PF10373.9	2.5e-40	1	2
ENSBTAP00000063171	EST1_DNA_bind	PF10373.9	2.5e-40	2	2
ENSBTAP00000012415	PIN_4	PF13638.6	2.1e-05	1	1
ENSBTAP00000063171	PIN_4	PF13638.6	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000012415	-	4599	-	ENSBTAP00000012415	1016 (aa)	-	A4IFN9
ENSBTAT00000078123	-	3033	-	ENSBTAP00000063171	1010 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000009435's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000009435's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000009435	SMG5	99	43.642	ENSBTAG00000021747	-	99	42.940

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000009435	SMG5	100	96.161	ENSG00000198952	SMG5	100	96.161	Homo_sapiens
ENSBTAG00000009435	SMG5	99	67.385	ENSAPOG00000019690	smg5	99	67.224	Acanthochromis_polyacanthus
ENSBTAG00000009435	SMG5	98	92.951	ENSAMEG00000014458	SMG5	100	92.951	Ailuropoda_melanoleuca
ENSBTAG00000009435	SMG5	99	64.751	ENSACIG00000001353	smg5	99	66.475	Amphilophus_citrinellus
ENSBTAG00000009435	SMG5	98	64.926	ENSAOCG00000019483	smg5	93	67.351	Amphiprion_ocellaris
ENSBTAG00000009435	SMG5	98	66.171	ENSAPEG00000022949	smg5	98	66.866	Amphiprion_percula
ENSBTAG00000009435	SMG5	99	66.377	ENSATEG00000005348	smg5	99	66.796	Anabas_testudineus
ENSBTAG00000009435	SMG5	98	78.634	ENSAPLG00000010263	SMG5	100	78.634	Anas_platyrhynchos
ENSBTAG00000009435	SMG5	100	95.571	ENSANAG00000032899	SMG5	100	95.571	Aotus_nancymaae
ENSBTAG00000009435	SMG5	99	64.683	ENSACLG00000009311	smg5	99	66.218	Astatotilapia_calliptera
ENSBTAG00000009435	SMG5	100	95.768	ENSCJAG00000005684	SMG5	100	95.768	Callithrix_jacchus
ENSBTAG00000009435	SMG5	100	94.390	ENSCAFG00000016839	SMG5	100	93.209	Canis_familiaris
ENSBTAG00000009435	SMG5	100	94.390	ENSCAFG00020006061	SMG5	100	93.209	Canis_lupus_dingo
ENSBTAG00000009435	SMG5	99	44.521	ENSCHIG00000006323	-	99	43.874	Capra_hircus
ENSBTAG00000009435	SMG5	100	99.114	ENSCHIG00000007709	SMG5	100	99.114	Capra_hircus
ENSBTAG00000009435	SMG5	100	94.985	ENSTSYG00000004099	SMG5	100	94.985	Carlito_syrichta
ENSBTAG00000009435	SMG5	97	73.022	ENSCAPG00000003631	SMG5	100	73.520	Cavia_aperea
ENSBTAG00000009435	SMG5	100	94.303	ENSCPOG00000015696	SMG5	100	94.008	Cavia_porcellus
ENSBTAG00000009435	SMG5	100	95.669	ENSCCAG00000027409	SMG5	100	95.669	Cebus_capucinus
ENSBTAG00000009435	SMG5	100	96.161	ENSCATG00000030539	SMG5	100	96.161	Cercocebus_atys
ENSBTAG00000009435	SMG5	100	95.088	ENSCLAG00000003983	SMG5	100	94.990	Chinchilla_lanigera
ENSBTAG00000009435	SMG5	100	96.063	ENSCSAG00000002120	SMG5	100	96.063	Chlorocebus_sabaeus
ENSBTAG00000009435	SMG5	54	88.686	ENSCHOG00000008741	-	57	88.686	Choloepus_hoffmanni
ENSBTAG00000009435	SMG5	94	76.900	ENSCPBG00000025848	SMG5	100	78.116	Chrysemys_picta_bellii
ENSBTAG00000009435	SMG5	93	35.397	ENSCING00000008706	-	99	35.421	Ciona_intestinalis
ENSBTAG00000009435	SMG5	100	92.224	ENSCANG00000029208	SMG5	100	92.224	Colobus_angolensis_palliatus
ENSBTAG00000009435	SMG5	100	91.847	ENSCGRG00001006336	Smg5	100	91.356	Cricetulus_griseus_chok1gshd
ENSBTAG00000009435	SMG5	98	91.851	ENSCGRG00000005111	Smg5	100	91.339	Cricetulus_griseus_crigri
ENSBTAG00000009435	SMG5	99	64.860	ENSCSEG00000014220	smg5	99	64.390	Cynoglossus_semilaevis
ENSBTAG00000009435	SMG5	99	60.624	ENSCVAG00000000529	smg5	99	61.127	Cyprinodon_variegatus
ENSBTAG00000009435	SMG5	100	91.043	ENSDNOG00000000051	SMG5	100	91.043	Dasypus_novemcinctus
ENSBTAG00000009435	SMG5	92	36.797	ENSDNOG00000039862	-	100	35.207	Dasypus_novemcinctus
ENSBTAG00000009435	SMG5	100	93.320	ENSDORG00000010382	Smg5	100	93.026	Dipodomys_ordii
ENSBTAG00000009435	SMG5	66	36.129	FBgn0019890	Smg5	62	36.129	Drosophila_melanogaster
ENSBTAG00000009435	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSBTAG00000009435	SMG5	90	47.240	ENSEBUG00000003739	smg5	98	47.146	Eptatretus_burgeri
ENSBTAG00000009435	SMG5	100	95.965	ENSEASG00005019122	SMG5	100	95.965	Equus_asinus_asinus
ENSBTAG00000009435	SMG5	100	95.965	ENSECAG00000001389	SMG5	100	95.965	Equus_caballus
ENSBTAG00000009435	SMG5	73	99.135	ENSEEUG00000012690	SMG5	75	99.135	Erinaceus_europaeus
ENSBTAG00000009435	SMG5	99	65.537	ENSELUG00000012585	smg5	99	65.537	Esox_lucius
ENSBTAG00000009435	SMG5	100	94.094	ENSFCAG00000011783	SMG5	100	92.920	Felis_catus
ENSBTAG00000009435	SMG5	59	82.471	ENSFALG00000001166	-	99	82.580	Ficedula_albicollis
ENSBTAG00000009435	SMG5	98	92.447	ENSFDAG00000017388	SMG5	100	92.346	Fukomys_damarensis
ENSBTAG00000009435	SMG5	97	61.910	ENSFHEG00000013939	smg5	95	68.051	Fundulus_heteroclitus
ENSBTAG00000009435	SMG5	99	61.224	ENSGMOG00000007310	smg5	93	76.364	Gadus_morhua
ENSBTAG00000009435	SMG5	99	78.110	ENSGALG00000029918	-	100	78.000	Gallus_gallus
ENSBTAG00000009435	SMG5	50	51.705	ENSGAFG00000021691	smg5	96	67.093	Gambusia_affinis
ENSBTAG00000009435	SMG5	100	78.748	ENSGAGG00000016131	SMG5	100	78.843	Gopherus_agassizii
ENSBTAG00000009435	SMG5	100	95.866	ENSGGOG00000010932	SMG5	100	95.866	Gorilla_gorilla
ENSBTAG00000009435	SMG5	99	64.947	ENSHBUG00000008654	smg5	99	66.000	Haplochromis_burtoni
ENSBTAG00000009435	SMG5	100	92.436	ENSHGLG00000019152	SMG5	100	92.633	Heterocephalus_glaber_female
ENSBTAG00000009435	SMG5	90	92.662	ENSHGLG00100015948	SMG5	99	92.881	Heterocephalus_glaber_male
ENSBTAG00000009435	SMG5	86	73.839	ENSHCOG00000010229	smg5	84	73.594	Hippocampus_comes
ENSBTAG00000009435	SMG5	99	61.754	ENSIPUG00000006624	Smg5	99	62.094	Ictalurus_punctatus
ENSBTAG00000009435	SMG5	100	94.882	ENSSTOG00000001780	SMG5	100	94.882	Ictidomys_tridecemlineatus
ENSBTAG00000009435	SMG5	100	91.658	ENSJJAG00000022763	Smg5	100	91.266	Jaculus_jaculus
ENSBTAG00000009435	SMG5	50	58.791	ENSKMAG00000014586	smg5	99	61.778	Kryptolebias_marmoratus
ENSBTAG00000009435	SMG5	99	65.830	ENSLBEG00000002145	smg5	99	65.764	Labrus_bergylta
ENSBTAG00000009435	SMG5	100	64.728	ENSLACG00000010521	SMG5	100	64.633	Latimeria_chalumnae
ENSBTAG00000009435	SMG5	96	78.638	ENSLOCG00000008380	smg5	93	78.588	Lepisosteus_oculatus
ENSBTAG00000009435	SMG5	100	93.996	ENSLAFG00000006241	SMG5	100	93.996	Loxodonta_africana
ENSBTAG00000009435	SMG5	100	96.063	ENSMFAG00000045357	SMG5	100	96.063	Macaca_fascicularis
ENSBTAG00000009435	SMG5	100	96.063	ENSMMUG00000000090	SMG5	100	96.063	Macaca_mulatta
ENSBTAG00000009435	SMG5	100	95.965	ENSMNEG00000044425	SMG5	100	95.965	Macaca_nemestrina
ENSBTAG00000009435	SMG5	100	89.804	ENSMLEG00000041192	SMG5	100	89.804	Mandrillus_leucophaeus
ENSBTAG00000009435	SMG5	99	61.820	ENSMAMG00000010683	smg5	58	55.772	Mastacembelus_armatus
ENSBTAG00000009435	SMG5	99	62.892	ENSMZEG00005015815	smg5	99	64.115	Maylandia_zebra
ENSBTAG00000009435	SMG5	63	58.045	ENSMZEG00005016543	smg5	100	59.242	Maylandia_zebra
ENSBTAG00000009435	SMG5	100	90.766	ENSMAUG00000010381	Smg5	100	90.472	Mesocricetus_auratus
ENSBTAG00000009435	SMG5	100	95.669	ENSMICG00000002257	SMG5	100	95.669	Microcebus_murinus
ENSBTAG00000009435	SMG5	100	90.882	ENSMOCG00000016590	Smg5	100	90.588	Microtus_ochrogaster
ENSBTAG00000009435	SMG5	99	58.965	ENSMMOG00000017199	smg5	99	59.569	Mola_mola
ENSBTAG00000009435	SMG5	77	39.108	ENSMODG00000004735	-	86	39.674	Monodelphis_domestica
ENSBTAG00000009435	SMG5	87	89.302	ENSMODG00000016901	SMG5	98	88.288	Monodelphis_domestica
ENSBTAG00000009435	SMG5	97	35.551	ENSMODG00000004511	-	99	35.154	Monodelphis_domestica
ENSBTAG00000009435	SMG5	86	46.409	ENSMODG00000004532	-	83	38.211	Monodelphis_domestica
ENSBTAG00000009435	SMG5	78	37.596	ENSMODG00000010675	-	84	37.736	Monodelphis_domestica
ENSBTAG00000009435	SMG5	99	60.641	ENSMALG00000010375	smg5	55	54.708	Monopterus_albus
ENSBTAG00000009435	SMG5	100	91.650	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSBTAG00000009435	SMG5	100	91.749	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSBTAG00000009435	SMG5	100	91.364	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSBTAG00000009435	SMG5	100	91.552	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSBTAG00000009435	SMG5	94	93.053	ENSMPUG00000004546	SMG5	100	91.789	Mustela_putorius_furo
ENSBTAG00000009435	SMG5	100	93.738	ENSMLUG00000008518	SMG5	100	93.151	Myotis_lucifugus
ENSBTAG00000009435	SMG5	100	92.822	ENSNGAG00000020706	Smg5	100	92.822	Nannospalax_galili
ENSBTAG00000009435	SMG5	98	44.766	ENSNGAG00000012101	-	98	44.797	Nannospalax_galili
ENSBTAG00000009435	SMG5	97	63.363	ENSNBRG00000004332	smg5	98	64.393	Neolamprologus_brichardi
ENSBTAG00000009435	SMG5	100	95.669	ENSNLEG00000012439	SMG5	100	95.669	Nomascus_leucogenys
ENSBTAG00000009435	SMG5	100	87.512	ENSMEUG00000012834	SMG5	100	87.906	Notamacropus_eugenii
ENSBTAG00000009435	SMG5	100	93.701	ENSOPRG00000009152	SMG5	100	93.701	Ochotona_princeps
ENSBTAG00000009435	SMG5	100	94.587	ENSODEG00000012237	SMG5	100	94.587	Octodon_degus
ENSBTAG00000009435	SMG5	98	94.859	ENSOCUG00000012886	SMG5	100	94.859	Oryctolagus_cuniculus
ENSBTAG00000009435	SMG5	89	41.266	ENSOCUG00000023338	-	99	40.546	Oryctolagus_cuniculus
ENSBTAG00000009435	SMG5	99	64.425	ENSORLG00020013127	smg5	99	66.049	Oryzias_latipes_hni
ENSBTAG00000009435	SMG5	99	64.140	ENSORLG00015019014	smg5	99	65.953	Oryzias_latipes_hsok
ENSBTAG00000009435	SMG5	82	60.065	ENSOMEG00000021330	smg5	92	60.493	Oryzias_melastigma
ENSBTAG00000009435	SMG5	100	94.291	ENSOGAG00000004966	SMG5	100	94.291	Otolemur_garnettii
ENSBTAG00000009435	SMG5	99	44.141	ENSOARG00000011963	-	99	43.220	Ovis_aries
ENSBTAG00000009435	SMG5	100	99.213	ENSOARG00000005778	SMG5	100	99.213	Ovis_aries
ENSBTAG00000009435	SMG5	100	95.866	ENSPPAG00000011996	SMG5	100	95.866	Pan_paniscus
ENSBTAG00000009435	SMG5	98	93.952	ENSPPRG00000011901	SMG5	100	92.742	Panthera_pardus
ENSBTAG00000009435	SMG5	99	85.771	ENSPTIG00000007892	SMG5	98	86.134	Panthera_tigris_altaica
ENSBTAG00000009435	SMG5	100	96.063	ENSPTRG00000023925	SMG5	100	96.063	Pan_troglodytes
ENSBTAG00000009435	SMG5	100	96.063	ENSPTRG00000049282	-	100	96.063	Pan_troglodytes
ENSBTAG00000009435	SMG5	100	96.161	ENSPANG00000011201	SMG5	100	96.161	Papio_anubis
ENSBTAG00000009435	SMG5	99	65.625	ENSPKIG00000009402	smg5	99	65.756	Paramormyrops_kingsleyae
ENSBTAG00000009435	SMG5	98	80.238	ENSPSIG00000015198	SMG5	100	80.338	Pelodiscus_sinensis
ENSBTAG00000009435	SMG5	99	61.127	ENSPMGG00000010465	smg5	99	60.718	Periophthalmus_magnuspinnatus
ENSBTAG00000009435	SMG5	56	46.410	ENSPEMG00000010022	-	95	45.189	Peromyscus_maniculatus_bairdii
ENSBTAG00000009435	SMG5	100	91.945	ENSPEMG00000001819	Smg5	100	91.552	Peromyscus_maniculatus_bairdii
ENSBTAG00000009435	SMG5	99	49.807	ENSPMAG00000000410	smg5	100	50.000	Petromyzon_marinus
ENSBTAG00000009435	SMG5	100	89.096	ENSPCIG00000018938	SMG5	100	88.212	Phascolarctos_cinereus
ENSBTAG00000009435	SMG5	50	60.223	ENSPFOG00000010191	smg5	99	62.545	Poecilia_formosa
ENSBTAG00000009435	SMG5	50	60.037	ENSPLAG00000009332	smg5	99	62.097	Poecilia_latipinna
ENSBTAG00000009435	SMG5	99	65.769	ENSPMEG00000014105	smg5	99	66.031	Poecilia_mexicana
ENSBTAG00000009435	SMG5	93	70.115	ENSPREG00000017713	smg5	99	62.007	Poecilia_reticulata
ENSBTAG00000009435	SMG5	100	96.063	ENSPPYG00000000723	SMG5	100	96.063	Pongo_abelii
ENSBTAG00000009435	SMG5	81	85.654	ENSPCAG00000008412	SMG5	88	85.654	Procavia_capensis
ENSBTAG00000009435	SMG5	100	95.571	ENSPCOG00000004741	SMG5	100	95.571	Propithecus_coquereli
ENSBTAG00000009435	SMG5	100	85.531	ENSPVAG00000016748	SMG5	100	85.531	Pteropus_vampyrus
ENSBTAG00000009435	SMG5	99	59.683	ENSPNYG00000013397	smg5	99	60.579	Pundamilia_nyererei
ENSBTAG00000009435	SMG5	100	91.650	ENSRNOG00000019590	Smg5	100	91.159	Rattus_norvegicus
ENSBTAG00000009435	SMG5	100	95.866	ENSRBIG00000027428	SMG5	100	95.866	Rhinopithecus_bieti
ENSBTAG00000009435	SMG5	100	95.768	ENSRROG00000030035	SMG5	100	95.768	Rhinopithecus_roxellana
ENSBTAG00000009435	SMG5	100	95.866	ENSSBOG00000033339	SMG5	100	95.866	Saimiri_boliviensis_boliviensis
ENSBTAG00000009435	SMG5	88	39.633	ENSSHAG00000000561	-	87	40.000	Sarcophilus_harrisii
ENSBTAG00000009435	SMG5	65	39.181	ENSSHAG00000000935	-	82	40.244	Sarcophilus_harrisii
ENSBTAG00000009435	SMG5	99	34.402	ENSSHAG00000009572	-	99	32.919	Sarcophilus_harrisii
ENSBTAG00000009435	SMG5	98	88.589	ENSSHAG00000014163	SMG5	100	87.688	Sarcophilus_harrisii
ENSBTAG00000009435	SMG5	99	66.538	ENSSFOG00015024175	smg5	99	66.343	Scleropages_formosus
ENSBTAG00000009435	SMG5	92	71.628	ENSSMAG00000013059	smg5	99	61.710	Scophthalmus_maximus
ENSBTAG00000009435	SMG5	99	61.253	ENSSDUG00000007122	smg5	55	56.149	Seriola_dumerili
ENSBTAG00000009435	SMG5	99	61.559	ENSSLDG00000011418	smg5	96	61.806	Seriola_lalandi_dorsalis
ENSBTAG00000009435	SMG5	90	81.461	ENSSARG00000012484	SMG5	100	81.461	Sorex_araneus
ENSBTAG00000009435	SMG5	94	77.812	ENSSPUG00000002260	SMG5	100	77.305	Sphenodon_punctatus
ENSBTAG00000009435	SMG5	92	76.389	ENSSPAG00000014266	smg5	99	65.019	Stegastes_partitus
ENSBTAG00000009435	SMG5	100	97.146	ENSSSCG00000006490	-	100	97.146	Sus_scrofa
ENSBTAG00000009435	SMG5	53	35.805	ENSSSCG00000037182	-	85	37.524	Sus_scrofa
ENSBTAG00000009435	SMG5	99	74.778	ENSSSCG00000039308	-	100	74.778	Sus_scrofa
ENSBTAG00000009435	SMG5	99	80.020	ENSTGUG00000003748	-	100	79.785	Taeniopygia_guttata
ENSBTAG00000009435	SMG5	99	64.609	ENSTRUG00000012580	smg5	99	63.900	Takifugu_rubripes
ENSBTAG00000009435	SMG5	99	65.116	ENSTNIG00000010303	smg5	99	64.985	Tetraodon_nigroviridis
ENSBTAG00000009435	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSBTAG00000009435	SMG5	100	92.028	ENSTTRG00000001401	SMG5	100	92.028	Tursiops_truncatus
ENSBTAG00000009435	SMG5	100	93.799	ENSUAMG00000013721	SMG5	100	92.618	Ursus_americanus
ENSBTAG00000009435	SMG5	98	89.347	ENSUMAG00000018041	SMG5	97	88.141	Ursus_maritimus
ENSBTAG00000009435	SMG5	90	95.628	ENSVPAG00000009446	SMG5	93	95.628	Vicugna_pacos
ENSBTAG00000009435	SMG5	100	94.094	ENSVVUG00000005887	SMG5	100	93.110	Vulpes_vulpes
ENSBTAG00000009435	SMG5	77	65.574	ENSXETG00000033791	SMG5	99	65.069	Xenopus_tropicalis
ENSBTAG00000009435	SMG5	61	76.322	ENSXCOG00000004379	smg5	96	68.132	Xiphophorus_couchianus
ENSBTAG00000009435	SMG5	99	65.988	ENSXMAG00000013499	smg5	99	66.025	Xiphophorus_maculatus