EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000009663 (Gene tree)
Gene ID: 533297
Gene Symbol: YBX3
Alias: -
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 25169 bases
Position: chr5:98853392-98878560
Accession: 37018
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000063490	CSD	PF00313.22	1.2e-26	1	1
ENSBTAP00000058871	CSD	PF00313.22	1.4e-26	1	1
ENSBTAP00000012735	CSD	PF00313.22	1.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000012735	-	1119	-	ENSBTAP00000012735	372 (aa)	-	A5D7Q4
ENSBTAT00000082669	-	1517	-	ENSBTAP00000058871	474 (aa)	-	-
ENSBTAT00000074030	-	1416	-	ENSBTAP00000063490	455 (aa)	XP_010803791	UPI000572E7AD

Gene Model

Click here to download ENSBTAG00000009663's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000009663's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000009663	YBX3	76	49.020	ENSBTAG00000017368	YBX1	89	56.604

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000009663	YBX3	100	77.003	ENSG00000060138	YBX3	89	100.000	Homo_sapiens
ENSBTAG00000009663	YBX3	92	84.857	ENSAMEG00000009393	YBX3	90	92.163	Ailuropoda_melanoleuca
ENSBTAG00000009663	YBX3	75	65.854	ENSAPLG00000003147	YBX3	100	65.965	Anas_platyrhynchos
ENSBTAG00000009663	YBX3	83	83.699	ENSANAG00000024492	-	100	88.608	Aotus_nancymaae
ENSBTAG00000009663	YBX3	66	87.342	ENSCJAG00000033824	-	87	86.301	Callithrix_jacchus
ENSBTAG00000009663	YBX3	88	81.471	ENSCJAG00000021660	-	100	82.429	Callithrix_jacchus
ENSBTAG00000009663	YBX3	76	90.559	ENSCAFG00000013401	YBX3	85	93.985	Canis_familiaris
ENSBTAG00000009663	YBX3	87	92.857	ENSCAFG00020006412	YBX3	100	85.526	Canis_lupus_dingo
ENSBTAG00000009663	YBX3	100	96.543	ENSCHIG00000010863	YBX3	100	98.936	Capra_hircus
ENSBTAG00000009663	YBX3	76	89.199	ENSTSYG00000004204	-	88	91.638	Carlito_syrichta
ENSBTAG00000009663	YBX3	90	54.386	ENSTSYG00000035821	-	97	75.000	Carlito_syrichta
ENSBTAG00000009663	YBX3	76	86.364	ENSCAPG00000015039	YBX3	93	89.510	Cavia_aperea
ENSBTAG00000009663	YBX3	77	87.329	ENSCPOG00000011329	YBX3	94	88.013	Cavia_porcellus
ENSBTAG00000009663	YBX3	88	81.471	ENSCCAG00000016469	YBX3	100	82.687	Cebus_capucinus
ENSBTAG00000009663	YBX3	100	76.227	ENSCATG00000034411	YBX3	100	81.137	Cercocebus_atys
ENSBTAG00000009663	YBX3	76	87.413	ENSCLAG00000016030	YBX3	94	90.559	Chinchilla_lanigera
ENSBTAG00000009663	YBX3	100	76.744	ENSCSAG00000008744	YBX3	100	81.654	Chlorocebus_sabaeus
ENSBTAG00000009663	YBX3	69	72.903	ENSCHOG00000011988	YBX3	57	92.593	Choloepus_hoffmanni
ENSBTAG00000009663	YBX3	90	72.189	ENSCPBG00000014147	YBX3	88	77.143	Chrysemys_picta_bellii
ENSBTAG00000009663	YBX3	78	86.441	ENSCANG00000036801	YBX3	100	88.254	Colobus_angolensis_palliatus
ENSBTAG00000009663	YBX3	83	87.540	ENSCGRG00001016148	Ybx3	100	83.947	Cricetulus_griseus_chok1gshd
ENSBTAG00000009663	YBX3	76	87.629	ENSCGRG00000004563	Ybx3	98	89.691	Cricetulus_griseus_crigri
ENSBTAG00000009663	YBX3	75	88.732	ENSDORG00000009103	Ybx3	81	91.608	Dipodomys_ordii
ENSBTAG00000009663	YBX3	75	79.021	ENSETEG00000002557	YBX3	99	80.282	Echinops_telfairi
ENSBTAG00000009663	YBX3	84	86.984	ENSEASG00005014726	YBX3	97	94.340	Equus_asinus_asinus
ENSBTAG00000009663	YBX3	84	90.476	ENSECAG00000013777	YBX3	100	86.316	Equus_caballus
ENSBTAG00000009663	YBX3	75	85.563	ENSEEUG00000010415	YBX3	100	89.085	Erinaceus_europaeus
ENSBTAG00000009663	YBX3	88	84.911	ENSFCAG00000027748	YBX3	100	84.935	Felis_catus
ENSBTAG00000009663	YBX3	75	62.718	ENSFALG00000003661	YBX3	100	63.448	Ficedula_albicollis
ENSBTAG00000009663	YBX3	76	83.566	ENSFDAG00000021192	YBX3	92	86.713	Fukomys_damarensis
ENSBTAG00000009663	YBX3	83	69.369	ENSGALG00000031890	YBX3	94	56.091	Gallus_gallus
ENSBTAG00000009663	YBX3	90	70.710	ENSGAGG00000017780	YBX3	94	71.307	Gopherus_agassizii
ENSBTAG00000009663	YBX3	100	77.003	ENSGGOG00000001352	YBX3	100	81.912	Gorilla_gorilla
ENSBTAG00000009663	YBX3	72	77.007	ENSHGLG00000015495	-	88	75.503	Heterocephalus_glaber_female
ENSBTAG00000009663	YBX3	80	74.183	ENSHGLG00000014798	-	92	76.752	Heterocephalus_glaber_female
ENSBTAG00000009663	YBX3	63	91.071	ENSHGLG00100003589	YBX3	87	63.986	Heterocephalus_glaber_male
ENSBTAG00000009663	YBX3	90	80.938	ENSSTOG00000032577	-	97	82.029	Ictidomys_tridecemlineatus
ENSBTAG00000009663	YBX3	76	82.168	ENSSTOG00000002108	-	96	80.064	Ictidomys_tridecemlineatus
ENSBTAG00000009663	YBX3	78	64.865	ENSJJAG00000014239	Ybx3	100	82.292	Jaculus_jaculus
ENSBTAG00000009663	YBX3	100	79.843	ENSLAFG00000017247	YBX3	100	85.714	Loxodonta_africana
ENSBTAG00000009663	YBX3	100	78.329	ENSMFAG00000039369	YBX3	100	81.395	Macaca_fascicularis
ENSBTAG00000009663	YBX3	85	82.769	ENSMMUG00000022469	YBX3	99	87.850	Macaca_mulatta
ENSBTAG00000009663	YBX3	100	78.068	ENSMNEG00000045109	YBX3	100	81.137	Macaca_nemestrina
ENSBTAG00000009663	YBX3	89	77.976	ENSMLEG00000033618	YBX3	81	90.210	Mandrillus_leucophaeus
ENSBTAG00000009663	YBX3	69	73.649	ENSMGAG00000014224	YBX3	100	66.202	Meleagris_gallopavo
ENSBTAG00000009663	YBX3	85	87.267	ENSMAUG00000012185	Ybx3	98	89.905	Mesocricetus_auratus
ENSBTAG00000009663	YBX3	86	78.652	ENSMICG00000031459	-	98	78.571	Microcebus_murinus
ENSBTAG00000009663	YBX3	77	90.411	ENSMICG00000038002	-	100	84.935	Microcebus_murinus
ENSBTAG00000009663	YBX3	80	88.079	ENSMOCG00000016291	Ybx3	100	90.554	Microtus_ochrogaster
ENSBTAG00000009663	YBX3	76	80.488	ENSMODG00000018248	YBX3	91	83.624	Monodelphis_domestica
ENSBTAG00000009663	YBX3	83	87.220	MGP_CAROLIEiJ_G0028947	Ybx3	100	83.421	Mus_caroli
ENSBTAG00000009663	YBX3	83	86.901	ENSMUSG00000030189	Ybx3	100	83.158	Mus_musculus
ENSBTAG00000009663	YBX3	83	87.540	MGP_PahariEiJ_G0022709	Ybx3	100	83.684	Mus_pahari
ENSBTAG00000009663	YBX3	83	87.220	MGP_SPRETEiJ_G0029994	Ybx3	100	83.421	Mus_spretus
ENSBTAG00000009663	YBX3	88	70.809	ENSMPUG00000011810	YBX3	100	71.756	Mustela_putorius_furo
ENSBTAG00000009663	YBX3	68	90.000	ENSMLUG00000007476	YBX3	100	89.179	Myotis_lucifugus
ENSBTAG00000009663	YBX3	78	81.081	ENSNGAG00000000710	Ybx3	100	62.658	Nannospalax_galili
ENSBTAG00000009663	YBX3	84	80.997	ENSNLEG00000034844	YBX3	99	81.818	Nomascus_leucogenys
ENSBTAG00000009663	YBX3	84	80.878	ENSODEG00000017957	YBX3	94	84.953	Octodon_degus
ENSBTAG00000009663	YBX3	78	84.014	ENSOCUG00000001889	YBX3	88	86.469	Oryctolagus_cuniculus
ENSBTAG00000009663	YBX3	100	79.337	ENSOGAG00000013245	YBX3	100	82.143	Otolemur_garnettii
ENSBTAG00000009663	YBX3	78	85.522	ENSOARG00000020919	YBX3	100	88.552	Ovis_aries
ENSBTAG00000009663	YBX3	77	86.689	ENSPPAG00000039068	YBX3	100	79.319	Pan_paniscus
ENSBTAG00000009663	YBX3	88	85.207	ENSPPRG00000005859	YBX3	100	85.195	Panthera_pardus
ENSBTAG00000009663	YBX3	75	91.166	ENSPTIG00000005322	YBX3	81	94.035	Panthera_tigris_altaica
ENSBTAG00000009663	YBX3	100	77.261	ENSPTRG00000004681	YBX3	100	82.171	Pan_troglodytes
ENSBTAG00000009663	YBX3	100	76.227	ENSPANG00000010280	YBX3	100	81.137	Papio_anubis
ENSBTAG00000009663	YBX3	56	90.385	ENSPSIG00000009247	YBX3	90	100.000	Pelodiscus_sinensis
ENSBTAG00000009663	YBX3	84	87.147	ENSPEMG00000012132	-	99	89.905	Peromyscus_maniculatus_bairdii
ENSBTAG00000009663	YBX3	68	87.387	ENSPEMG00000010391	-	91	68.051	Peromyscus_maniculatus_bairdii
ENSBTAG00000009663	YBX3	68	78.125	ENSPCIG00000029949	YBX3	100	79.457	Phascolarctos_cinereus
ENSBTAG00000009663	YBX3	100	76.744	ENSPPYG00000004279	YBX3	100	81.395	Pongo_abelii
ENSBTAG00000009663	YBX3	68	85.000	ENSPCAG00000001397	YBX3	98	83.946	Procavia_capensis
ENSBTAG00000009663	YBX3	83	74.051	ENSPVAG00000006740	YBX3	77	84.000	Pteropus_vampyrus
ENSBTAG00000009663	YBX3	83	88.179	ENSRNOG00000005480	Ybx3	100	84.211	Rattus_norvegicus
ENSBTAG00000009663	YBX3	100	77.519	ENSRBIG00000039208	YBX3	100	81.137	Rhinopithecus_bieti
ENSBTAG00000009663	YBX3	100	77.778	ENSRROG00000029638	YBX3	100	81.137	Rhinopithecus_roxellana
ENSBTAG00000009663	YBX3	92	76.923	ENSSBOG00000030573	YBX3	99	79.646	Saimiri_boliviensis_boliviensis
ENSBTAG00000009663	YBX3	75	75.945	ENSSHAG00000003262	YBX3	98	79.381	Sarcophilus_harrisii
ENSBTAG00000009663	YBX3	88	84.751	ENSSSCG00000000633	YBX3	100	87.113	Sus_scrofa
ENSBTAG00000009663	YBX3	75	64.912	ENSTGUG00000012047	YBX3	100	67.368	Taeniopygia_guttata
ENSBTAG00000009663	YBX3	100	76.316	ENSTBEG00000012570	YBX3	87	86.751	Tupaia_belangeri
ENSBTAG00000009663	YBX3	68	82.692	ENSTTRG00000008045	YBX3	100	86.842	Tursiops_truncatus
ENSBTAG00000009663	YBX3	73	91.941	ENSUAMG00000016662	YBX3	100	91.941	Ursus_americanus
ENSBTAG00000009663	YBX3	75	91.166	ENSUMAG00000016118	YBX3	94	94.035	Ursus_maritimus
ENSBTAG00000009663	YBX3	75	62.847	ENSVPAG00000000876	YBX3	100	66.784	Vicugna_pacos
ENSBTAG00000009663	YBX3	73	92.279	ENSVVUG00000004956	YBX3	100	92.279	Vulpes_vulpes
ENSBTAG00000009663	YBX3	55	84.158	ENSXETG00000016239	ybx3	96	56.962	Xenopus_tropicalis