EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000009969 (Gene tree)
Gene ID: 504506
Gene Symbol: RNPS1
Alias: -
Full Name: Bos taurus RNA binding protein with serine rich domain 1 (RNPS1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 9118 bases
Position: chr25:1778570-1787687
Accession: NM_001101841
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000073960	RRM_1	PF00076.22	7.6e-18	1	1
ENSBTAP00000013151	RRM_1	PF00076.22	8.4e-18	1	1
ENSBTAP00000067106	RRM_1	PF00076.22	8.4e-18	1	1
ENSBTAP00000061322	RRM_1	PF00076.22	1.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000078713	-	1971	-	ENSBTAP00000067106	305 (aa)	XP_005224445	M5FJW8
ENSBTAT00000070150	-	1876	-	ENSBTAP00000061322	367 (aa)	-	-
ENSBTAT00000013151	-	1915	XM_005224389	ENSBTAP00000013151	305 (aa)	XP_005224445	A6QR16
ENSBTAT00000068914	-	1783	XM_005224391	ENSBTAP00000073960	282 (aa)	XP_005224448	UPI000383E464

Gene Model

Click here to download ENSBTAG00000009969's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000009969's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000009969	RNPS1	100	99.344	ENSG00000205937	RNPS1	100	100.000	Homo_sapiens
ENSBTAG00000009969	RNPS1	71	67.742	ENSAPOG00000014649	-	76	69.124	Acanthochromis_polyacanthus
ENSBTAG00000009969	RNPS1	100	99.344	ENSAMEG00000017861	RNPS1	100	99.344	Ailuropoda_melanoleuca
ENSBTAG00000009969	RNPS1	76	67.907	ENSACIG00000014367	-	76	66.512	Amphilophus_citrinellus
ENSBTAG00000009969	RNPS1	86	70.370	ENSAOCG00000002404	RNPS1	85	70.782	Amphiprion_ocellaris
ENSBTAG00000009969	RNPS1	86	70.248	ENSAPEG00000006497	RNPS1	84	69.636	Amphiprion_percula
ENSBTAG00000009969	RNPS1	86	72.016	ENSATEG00000024267	RNPS1	85	72.541	Anabas_testudineus
ENSBTAG00000009969	RNPS1	81	63.710	ENSAPLG00000006231	RNPS1	59	92.661	Anas_platyrhynchos
ENSBTAG00000009969	RNPS1	76	90.987	ENSACAG00000004088	RNPS1	94	90.987	Anolis_carolinensis
ENSBTAG00000009969	RNPS1	85	89.540	ENSANAG00000029802	-	90	92.887	Aotus_nancymaae
ENSBTAG00000009969	RNPS1	100	99.016	ENSANAG00000028802	RNPS1	100	99.016	Aotus_nancymaae
ENSBTAG00000009969	RNPS1	77	62.844	ENSACLG00000021537	-	87	67.220	Astatotilapia_calliptera
ENSBTAG00000009969	RNPS1	77	75.688	ENSAMXG00000006330	-	81	65.686	Astyanax_mexicanus
ENSBTAG00000009969	RNPS1	100	99.344	ENSCJAG00000014969	RNPS1	100	99.344	Callithrix_jacchus
ENSBTAG00000009969	RNPS1	100	99.344	ENSCAFG00000019397	RNPS1	100	99.344	Canis_familiaris
ENSBTAG00000009969	RNPS1	100	99.344	ENSCAFG00020026159	RNPS1	100	99.344	Canis_lupus_dingo
ENSBTAG00000009969	RNPS1	72	99.510	ENSCHIG00000014621	-	69	99.507	Capra_hircus
ENSBTAG00000009969	RNPS1	79	95.455	ENSTSYG00000031848	-	98	95.417	Carlito_syrichta
ENSBTAG00000009969	RNPS1	100	99.344	ENSTSYG00000001629	RNPS1	100	99.344	Carlito_syrichta
ENSBTAG00000009969	RNPS1	100	99.016	ENSCAPG00000007731	RNPS1	100	99.016	Cavia_aperea
ENSBTAG00000009969	RNPS1	100	99.016	ENSCPOG00000002066	RNPS1	100	99.016	Cavia_porcellus
ENSBTAG00000009969	RNPS1	100	99.016	ENSCCAG00000034480	RNPS1	100	99.016	Cebus_capucinus
ENSBTAG00000009969	RNPS1	95	89.691	ENSCATG00000042361	-	80	94.167	Cercocebus_atys
ENSBTAG00000009969	RNPS1	100	99.344	ENSCATG00000013756	RNPS1	100	99.344	Cercocebus_atys
ENSBTAG00000009969	RNPS1	100	99.016	ENSCLAG00000015546	RNPS1	100	99.016	Chinchilla_lanigera
ENSBTAG00000009969	RNPS1	97	96.703	ENSCSAG00000005219	-	74	98.649	Chlorocebus_sabaeus
ENSBTAG00000009969	RNPS1	100	97.705	ENSCHOG00000004866	RNPS1	100	97.705	Choloepus_hoffmanni
ENSBTAG00000009969	RNPS1	79	63.750	ENSCPBG00000000214	RNPS1	73	64.055	Chrysemys_picta_bellii
ENSBTAG00000009969	RNPS1	72	85.577	ENSCANG00000030189	-	79	70.192	Colobus_angolensis_palliatus
ENSBTAG00000009969	RNPS1	100	99.344	ENSCANG00000041307	RNPS1	100	99.344	Colobus_angolensis_palliatus
ENSBTAG00000009969	RNPS1	100	99.344	ENSCGRG00001020431	Rnps1	100	99.344	Cricetulus_griseus_chok1gshd
ENSBTAG00000009969	RNPS1	100	98.689	ENSCGRG00000014021	Rnps1	80	100.000	Cricetulus_griseus_crigri
ENSBTAG00000009969	RNPS1	77	70.183	ENSCSEG00000000402	RNPS1	77	67.364	Cynoglossus_semilaevis
ENSBTAG00000009969	RNPS1	86	69.835	ENSCSEG00000015997	RNPS1	84	69.959	Cynoglossus_semilaevis
ENSBTAG00000009969	RNPS1	77	70.968	ENSCVAG00000010868	RNPS1	75	64.815	Cyprinodon_variegatus
ENSBTAG00000009969	RNPS1	86	63.374	ENSDARG00000100188	RNPS1	86	69.262	Danio_rerio
ENSBTAG00000009969	RNPS1	86	63.374	ENSDARG00000116743	rnps1	86	69.262	Danio_rerio
ENSBTAG00000009969	RNPS1	70	73.469	ENSDNOG00000038751	-	99	72.727	Dasypus_novemcinctus
ENSBTAG00000009969	RNPS1	100	99.344	ENSDNOG00000016081	RNPS1	100	99.344	Dasypus_novemcinctus
ENSBTAG00000009969	RNPS1	100	98.689	ENSDORG00000001755	Rnps1	100	98.689	Dipodomys_ordii
ENSBTAG00000009969	RNPS1	100	99.344	ENSEASG00005004862	RNPS1	100	99.344	Equus_asinus_asinus
ENSBTAG00000009969	RNPS1	81	93.548	ENSECAG00000023288	RNPS1	83	98.268	Equus_caballus
ENSBTAG00000009969	RNPS1	100	80.328	ENSEEUG00000005933	RNPS1	100	80.328	Erinaceus_europaeus
ENSBTAG00000009969	RNPS1	100	99.016	ENSFCAG00000007690	RNPS1	100	99.016	Felis_catus
ENSBTAG00000009969	RNPS1	79	95.089	ENSFALG00000004868	RNPS1	79	95.111	Ficedula_albicollis
ENSBTAG00000009969	RNPS1	100	98.689	ENSFDAG00000003386	RNPS1	100	98.689	Fukomys_damarensis
ENSBTAG00000009969	RNPS1	77	70.833	ENSFHEG00000011705	RNPS1	75	71.429	Fundulus_heteroclitus
ENSBTAG00000009969	RNPS1	80	95.111	ENSGALG00000009288	RNPS1	79	95.111	Gallus_gallus
ENSBTAG00000009969	RNPS1	86	68.033	ENSGACG00000005641	-	85	68.033	Gasterosteus_aculeatus
ENSBTAG00000009969	RNPS1	81	92.742	ENSGAGG00000010452	RNPS1	81	92.742	Gopherus_agassizii
ENSBTAG00000009969	RNPS1	100	99.344	ENSGGOG00000014275	RNPS1	100	99.344	Gorilla_gorilla
ENSBTAG00000009969	RNPS1	73	98.068	ENSGGOG00000026421	-	79	98.068	Gorilla_gorilla
ENSBTAG00000009969	RNPS1	77	62.844	ENSHBUG00000017337	-	76	71.429	Haplochromis_burtoni
ENSBTAG00000009969	RNPS1	100	99.344	ENSHGLG00000013957	RNPS1	100	99.344	Heterocephalus_glaber_female
ENSBTAG00000009969	RNPS1	79	95.982	ENSHGLG00000006292	-	97	95.142	Heterocephalus_glaber_female
ENSBTAG00000009969	RNPS1	73	92.683	ENSHGLG00100011610	-	84	92.683	Heterocephalus_glaber_male
ENSBTAG00000009969	RNPS1	92	93.846	ENSHGLG00100015267	-	80	95.495	Heterocephalus_glaber_male
ENSBTAG00000009969	RNPS1	80	83.265	ENSHGLG00100017879	-	80	70.248	Heterocephalus_glaber_male
ENSBTAG00000009969	RNPS1	100	99.344	ENSHGLG00100003539	RNPS1	100	99.344	Heterocephalus_glaber_male
ENSBTAG00000009969	RNPS1	77	79.167	ENSSTOG00000013200	RNPS1	100	87.869	Ictidomys_tridecemlineatus
ENSBTAG00000009969	RNPS1	82	81.275	ENSJJAG00000019234	-	62	78.539	Jaculus_jaculus
ENSBTAG00000009969	RNPS1	100	99.016	ENSJJAG00000015576	-	100	99.016	Jaculus_jaculus
ENSBTAG00000009969	RNPS1	86	71.721	ENSKMAG00000009135	RNPS1	85	67.213	Kryptolebias_marmoratus
ENSBTAG00000009969	RNPS1	77	88.018	ENSLACG00000007112	RNPS1	76	88.018	Latimeria_chalumnae
ENSBTAG00000009969	RNPS1	77	67.431	ENSLOCG00000001758	RNPS1	76	84.793	Lepisosteus_oculatus
ENSBTAG00000009969	RNPS1	82	89.641	ENSMFAG00000044121	-	75	82.432	Macaca_fascicularis
ENSBTAG00000009969	RNPS1	100	99.344	ENSMFAG00000042142	RNPS1	100	99.344	Macaca_fascicularis
ENSBTAG00000009969	RNPS1	88	94.403	ENSMMUG00000041726	-	84	95.021	Macaca_mulatta
ENSBTAG00000009969	RNPS1	72	100.000	ENSMMUG00000019238	-	79	100.000	Macaca_mulatta
ENSBTAG00000009969	RNPS1	88	94.776	ENSMNEG00000024827	-	84	95.417	Macaca_nemestrina
ENSBTAG00000009969	RNPS1	100	99.344	ENSMLEG00000036928	RNPS1	100	99.344	Mandrillus_leucophaeus
ENSBTAG00000009969	RNPS1	73	93.237	ENSMLEG00000040232	-	81	93.237	Mandrillus_leucophaeus
ENSBTAG00000009969	RNPS1	77	69.907	ENSMAMG00000021609	-	76	70.507	Mastacembelus_armatus
ENSBTAG00000009969	RNPS1	86	74.486	ENSMAMG00000021148	-	89	68.182	Mastacembelus_armatus
ENSBTAG00000009969	RNPS1	71	62.844	ENSMZEG00005006256	-	76	71.429	Maylandia_zebra
ENSBTAG00000009969	RNPS1	78	94.977	ENSMGAG00000010042	RNPS1	98	94.492	Meleagris_gallopavo
ENSBTAG00000009969	RNPS1	100	99.016	ENSMICG00000031543	RNPS1	100	99.016	Microcebus_murinus
ENSBTAG00000009969	RNPS1	100	99.344	ENSMOCG00000003429	Rnps1	100	99.344	Microtus_ochrogaster
ENSBTAG00000009969	RNPS1	76	66.512	ENSMMOG00000010863	RNPS1	75	65.116	Mola_mola
ENSBTAG00000009969	RNPS1	80	80.894	ENSMODG00000015891	RNPS1	80	82.927	Monodelphis_domestica
ENSBTAG00000009969	RNPS1	100	99.344	ENSMUSG00000034681	Rnps1	100	99.344	Mus_musculus
ENSBTAG00000009969	RNPS1	100	99.291	MGP_PahariEiJ_G0023498	Rnps1	100	99.291	Mus_pahari
ENSBTAG00000009969	RNPS1	100	99.344	MGP_SPRETEiJ_G0022092	Rnps1	100	99.344	Mus_spretus
ENSBTAG00000009969	RNPS1	100	99.344	ENSMLUG00000016808	RNPS1	100	99.344	Myotis_lucifugus
ENSBTAG00000009969	RNPS1	100	99.291	ENSNGAG00000023702	Rnps1	100	99.291	Nannospalax_galili
ENSBTAG00000009969	RNPS1	76	67.907	ENSNBRG00000023437	RNPS1	75	66.512	Neolamprologus_brichardi
ENSBTAG00000009969	RNPS1	77	63.014	ENSNBRG00000014540	-	83	67.672	Neolamprologus_brichardi
ENSBTAG00000009969	RNPS1	89	97.794	ENSNLEG00000009243	RNPS1	100	97.794	Nomascus_leucogenys
ENSBTAG00000009969	RNPS1	80	97.551	ENSMEUG00000008882	RNPS1	80	97.551	Notamacropus_eugenii
ENSBTAG00000009969	RNPS1	100	96.066	ENSOPRG00000016422	RNPS1	100	96.066	Ochotona_princeps
ENSBTAG00000009969	RNPS1	58	64.024	ENSODEG00000002513	-	66	62.376	Octodon_degus
ENSBTAG00000009969	RNPS1	57	65.625	ENSODEG00000017258	-	77	64.516	Octodon_degus
ENSBTAG00000009969	RNPS1	71	61.927	ENSONIG00000019627	-	76	70.968	Oreochromis_niloticus
ENSBTAG00000009969	RNPS1	77	69.266	ENSORLG00015011183	RNPS1	68	70.588	Oryzias_latipes_hsok
ENSBTAG00000009969	RNPS1	95	99.310	ENSOARG00000018056	-	81	99.310	Ovis_aries
ENSBTAG00000009969	RNPS1	89	94.444	ENSPPAG00000011845	RNPS1	91	93.416	Pan_paniscus
ENSBTAG00000009969	RNPS1	79	94.215	ENSPPAG00000037836	-	99	94.215	Pan_paniscus
ENSBTAG00000009969	RNPS1	100	99.016	ENSPPRG00000011255	RNPS1	100	99.016	Panthera_pardus
ENSBTAG00000009969	RNPS1	57	100.000	ENSPTIG00000015643	RNPS1	75	100.000	Panthera_tigris_altaica
ENSBTAG00000009969	RNPS1	100	99.016	ENSPTRG00000031310	RNPS1	100	99.016	Pan_troglodytes
ENSBTAG00000009969	RNPS1	78	93.724	ENSPTRG00000046326	-	91	93.724	Pan_troglodytes
ENSBTAG00000009969	RNPS1	100	99.344	ENSPANG00000015748	RNPS1	100	99.344	Papio_anubis
ENSBTAG00000009969	RNPS1	73	72.947	ENSPANG00000033576	-	75	74.129	Papio_anubis
ENSBTAG00000009969	RNPS1	77	81.279	ENSPKIG00000023465	RNPS1	76	81.193	Paramormyrops_kingsleyae
ENSBTAG00000009969	RNPS1	81	92.339	ENSPSIG00000006048	RNPS1	81	92.339	Pelodiscus_sinensis
ENSBTAG00000009969	RNPS1	100	99.344	ENSPEMG00000012797	Rnps1	100	99.344	Peromyscus_maniculatus_bairdii
ENSBTAG00000009969	RNPS1	55	87.218	ENSPCIG00000016114	-	71	98.113	Phascolarctos_cinereus
ENSBTAG00000009969	RNPS1	100	97.518	ENSPCIG00000025012	RNPS1	100	97.518	Phascolarctos_cinereus
ENSBTAG00000009969	RNPS1	77	67.742	ENSPFOG00000009978	RNPS1	75	63.889	Poecilia_formosa
ENSBTAG00000009969	RNPS1	77	67.742	ENSPLAG00000009343	RNPS1	75	63.889	Poecilia_latipinna
ENSBTAG00000009969	RNPS1	77	67.742	ENSPMEG00000008552	RNPS1	75	63.889	Poecilia_mexicana
ENSBTAG00000009969	RNPS1	77	67.742	ENSPREG00000001843	RNPS1	75	63.889	Poecilia_reticulata
ENSBTAG00000009969	RNPS1	100	97.049	ENSPCAG00000004514	RNPS1	100	97.049	Procavia_capensis
ENSBTAG00000009969	RNPS1	100	99.016	ENSPCOG00000005478	RNPS1	100	99.016	Propithecus_coquereli
ENSBTAG00000009969	RNPS1	100	99.016	ENSPVAG00000005105	RNPS1	100	99.016	Pteropus_vampyrus
ENSBTAG00000009969	RNPS1	77	76.606	ENSPNAG00000025479	RNPS1	75	69.444	Pygocentrus_nattereri
ENSBTAG00000009969	RNPS1	100	99.016	ENSRNOG00000008703	Rnps1	100	99.016	Rattus_norvegicus
ENSBTAG00000009969	RNPS1	99	98.577	ENSRBIG00000038965	-	99	98.577	Rhinopithecus_bieti
ENSBTAG00000009969	RNPS1	89	99.632	ENSRROG00000041252	RNPS1	97	96.639	Rhinopithecus_roxellana
ENSBTAG00000009969	RNPS1	100	99.344	ENSSBOG00000027927	RNPS1	100	99.344	Saimiri_boliviensis_boliviensis
ENSBTAG00000009969	RNPS1	100	97.377	ENSSHAG00000016951	RNPS1	100	97.377	Sarcophilus_harrisii
ENSBTAG00000009969	RNPS1	77	76.852	ENSSFOG00015019341	-	77	63.551	Scleropages_formosus
ENSBTAG00000009969	RNPS1	77	73.973	ENSSFOG00015022746	RNPS1	79	67.281	Scleropages_formosus
ENSBTAG00000009969	RNPS1	86	70.782	ENSSDUG00000011453	RNPS1	85	71.311	Seriola_dumerili
ENSBTAG00000009969	RNPS1	78	65.833	ENSSDUG00000006433	-	77	66.807	Seriola_dumerili
ENSBTAG00000009969	RNPS1	83	65.236	ENSSLDG00000021341	RNPS1	76	67.647	Seriola_lalandi_dorsalis
ENSBTAG00000009969	RNPS1	79	97.107	ENSSARG00000001577	RNPS1	86	97.107	Sorex_araneus
ENSBTAG00000009969	RNPS1	87	93.233	ENSSPUG00000016588	RNPS1	87	93.233	Sphenodon_punctatus
ENSBTAG00000009969	RNPS1	100	99.016	ENSSSCG00000008048	RNPS1	100	99.016	Sus_scrofa
ENSBTAG00000009969	RNPS1	79	94.643	ENSTGUG00000003237	RNPS1	79	94.667	Taeniopygia_guttata
ENSBTAG00000009969	RNPS1	86	71.721	ENSTRUG00000008602	RNPS1	85	71.721	Takifugu_rubripes
ENSBTAG00000009969	RNPS1	86	72.016	ENSTNIG00000009753	RNPS1	85	71.951	Tetraodon_nigroviridis
ENSBTAG00000009969	RNPS1	89	99.632	ENSTBEG00000009098	RNPS1	100	99.632	Tupaia_belangeri
ENSBTAG00000009969	RNPS1	100	99.344	ENSTTRG00000008220	RNPS1	100	99.344	Tursiops_truncatus
ENSBTAG00000009969	RNPS1	90	99.634	ENSUAMG00000004462	RNPS1	100	99.634	Ursus_americanus
ENSBTAG00000009969	RNPS1	100	99.344	ENSUMAG00000022327	RNPS1	100	99.344	Ursus_maritimus
ENSBTAG00000009969	RNPS1	100	99.344	ENSVVUG00000009244	RNPS1	100	99.344	Vulpes_vulpes
ENSBTAG00000009969	RNPS1	81	72.174	ENSXETG00000024439	rnps1	70	76.389	Xenopus_tropicalis
ENSBTAG00000009969	RNPS1	86	67.623	ENSXMAG00000004827	RNPS1	85	64.198	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0016607	nuclear speck	-	IEA	Component
GO:0043065	positive regulation of apoptotic process	-	ISS	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISS	Process
GO:0061574	ASAP complex	-	ISS	Component