EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000010602 (Gene tree)
Gene ID: 508728
Gene Symbol: DDX56
Alias: -
Full Name: Bos taurus DEAD-box helicase 56 (DDX56)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 9358 bases
Position: chr4:76865589-76874946
Accession: NM_001034329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000014014	ResIII	PF04851.15	2.8e-09	1	1
ENSBTAP00000014014	DEAD	PF00270.29	8.6e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000014014	-	2308	-	ENSBTAP00000014014	546 (aa)	-	Q3SZ40

Gene Model

Click here to download ENSBTAG00000010602's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000010602's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000010602	DDX56	68	47.541	ENSBTAG00000009906	DDX1	54	47.541
ENSBTAG00000010602	DDX56	72	30.597	ENSBTAG00000000811	DDX49	75	30.597
ENSBTAG00000010602	DDX56	70	30.155	ENSBTAG00000027319	-	51	30.155
ENSBTAG00000010602	DDX56	73	31.204	ENSBTAG00000010313	DDX52	63	30.806
ENSBTAG00000010602	DDX56	74	33.415	ENSBTAG00000019608	DDX47	80	33.415
ENSBTAG00000010602	DDX56	70	30.155	ENSBTAG00000015077	-	52	30.155

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000010602	DDX56	100	93.053	ENSG00000136271	DDX56	100	95.467	Homo_sapiens
ENSBTAG00000010602	DDX56	99	64.158	ENSAPOG00000017113	ddx56	99	64.337	Acanthochromis_polyacanthus
ENSBTAG00000010602	DDX56	100	91.575	ENSAMEG00000017711	DDX56	100	91.392	Ailuropoda_melanoleuca
ENSBTAG00000010602	DDX56	92	60.511	ENSACIG00000013747	ddx56	98	66.484	Amphilophus_citrinellus
ENSBTAG00000010602	DDX56	88	67.146	ENSAOCG00000015447	-	87	67.146	Amphiprion_ocellaris
ENSBTAG00000010602	DDX56	97	63.822	ENSAOCG00000018059	ddx56	93	67.400	Amphiprion_ocellaris
ENSBTAG00000010602	DDX56	99	63.978	ENSAPEG00000007267	ddx56	99	63.799	Amphiprion_percula
ENSBTAG00000010602	DDX56	97	65.455	ENSATEG00000005279	ddx56	98	65.636	Anabas_testudineus
ENSBTAG00000010602	DDX56	99	64.273	ENSACLG00000020113	ddx56	99	64.632	Astatotilapia_calliptera
ENSBTAG00000010602	DDX56	98	60.503	ENSAMXG00000019357	ddx56	99	61.221	Astyanax_mexicanus
ENSBTAG00000010602	DDX56	97	41.355	WBGene00016073	C24H12.4	81	42.639	Caenorhabditis_elegans
ENSBTAG00000010602	DDX56	100	91.773	ENSCJAG00000012233	DDX56	100	91.773	Callithrix_jacchus
ENSBTAG00000010602	DDX56	82	90.583	ENSCAFG00000029295	DDX56	100	90.359	Canis_familiaris
ENSBTAG00000010602	DDX56	100	86.654	ENSCAFG00020019695	DDX56	100	85.949	Canis_lupus_dingo
ENSBTAG00000010602	DDX56	100	98.901	ENSCHIG00000014261	DDX56	100	98.901	Capra_hircus
ENSBTAG00000010602	DDX56	100	92.687	ENSTSYG00000008048	DDX56	100	93.236	Carlito_syrichta
ENSBTAG00000010602	DDX56	86	90.275	ENSCAPG00000006286	DDX56	100	89.852	Cavia_aperea
ENSBTAG00000010602	DDX56	100	90.859	ENSCPOG00000003359	DDX56	100	90.494	Cavia_porcellus
ENSBTAG00000010602	DDX56	100	91.225	ENSCCAG00000025303	DDX56	100	91.773	Cebus_capucinus
ENSBTAG00000010602	DDX56	100	93.040	ENSCATG00000039389	DDX56	100	93.040	Cercocebus_atys
ENSBTAG00000010602	DDX56	100	92.308	ENSCLAG00000007666	DDX56	100	92.308	Chinchilla_lanigera
ENSBTAG00000010602	DDX56	100	93.236	ENSCSAG00000015636	DDX56	100	93.236	Chlorocebus_sabaeus
ENSBTAG00000010602	DDX56	97	69.301	ENSCPBG00000024556	DDX56	97	69.174	Chrysemys_picta_bellii
ENSBTAG00000010602	DDX56	91	56.746	ENSCING00000005185	-	97	56.693	Ciona_intestinalis
ENSBTAG00000010602	DDX56	91	54.851	ENSCSAVG00000011266	-	99	54.851	Ciona_savignyi
ENSBTAG00000010602	DDX56	100	92.870	ENSCANG00000028187	DDX56	100	92.870	Colobus_angolensis_palliatus
ENSBTAG00000010602	DDX56	100	90.476	ENSCGRG00001019019	Ddx56	100	90.476	Cricetulus_griseus_chok1gshd
ENSBTAG00000010602	DDX56	100	90.476	ENSCGRG00000011870	Ddx56	100	90.476	Cricetulus_griseus_crigri
ENSBTAG00000010602	DDX56	98	64.464	ENSCSEG00000008368	ddx56	99	63.830	Cynoglossus_semilaevis
ENSBTAG00000010602	DDX56	98	65.209	ENSCVAG00000006499	ddx56	98	64.973	Cyprinodon_variegatus
ENSBTAG00000010602	DDX56	98	64.079	ENSDARG00000020913	ddx56	99	65.162	Danio_rerio
ENSBTAG00000010602	DDX56	86	88.559	ENSDNOG00000036526	DDX56	99	88.559	Dasypus_novemcinctus
ENSBTAG00000010602	DDX56	95	48.375	FBgn0001565	Hlc	89	49.407	Drosophila_melanogaster
ENSBTAG00000010602	DDX56	87	61.474	ENSETEG00000019559	-	100	60.632	Echinops_telfairi
ENSBTAG00000010602	DDX56	83	79.803	ENSETEG00000002969	-	83	79.803	Echinops_telfairi
ENSBTAG00000010602	DDX56	98	59.165	ENSEBUG00000009986	ddx56	99	59.710	Eptatretus_burgeri
ENSBTAG00000010602	DDX56	100	94.689	ENSEASG00005017795	DDX56	100	94.689	Equus_asinus_asinus
ENSBTAG00000010602	DDX56	100	94.505	ENSECAG00000019897	DDX56	100	94.505	Equus_caballus
ENSBTAG00000010602	DDX56	86	91.102	ENSEEUG00000004849	DDX56	100	91.102	Erinaceus_europaeus
ENSBTAG00000010602	DDX56	97	66.360	ENSELUG00000004150	ddx56	97	66.728	Esox_lucius
ENSBTAG00000010602	DDX56	99	92.294	ENSFCAG00000010261	DDX56	99	92.110	Felis_catus
ENSBTAG00000010602	DDX56	100	91.209	ENSFDAG00000007128	DDX56	100	91.209	Fukomys_damarensis
ENSBTAG00000010602	DDX56	98	65.065	ENSFHEG00000018008	ddx56	95	68.876	Fundulus_heteroclitus
ENSBTAG00000010602	DDX56	97	62.384	ENSGAFG00000006906	ddx56	97	62.570	Gambusia_affinis
ENSBTAG00000010602	DDX56	94	70.986	ENSGAGG00000006789	DDX56	89	72.600	Gopherus_agassizii
ENSBTAG00000010602	DDX56	100	93.053	ENSGGOG00000012031	DDX56	100	93.053	Gorilla_gorilla
ENSBTAG00000010602	DDX56	92	62.745	ENSHBUG00000015246	ddx56	92	63.035	Haplochromis_burtoni
ENSBTAG00000010602	DDX56	100	91.941	ENSHGLG00000017271	DDX56	100	91.941	Heterocephalus_glaber_female
ENSBTAG00000010602	DDX56	100	91.941	ENSHGLG00100015731	DDX56	100	91.941	Heterocephalus_glaber_male
ENSBTAG00000010602	DDX56	97	65.193	ENSHCOG00000001685	ddx56	97	64.825	Hippocampus_comes
ENSBTAG00000010602	DDX56	97	63.406	ENSIPUG00000006602	ddx56	96	63.043	Ictalurus_punctatus
ENSBTAG00000010602	DDX56	100	91.209	ENSSTOG00000000464	DDX56	100	91.209	Ictidomys_tridecemlineatus
ENSBTAG00000010602	DDX56	99	90.037	ENSJJAG00000014269	Ddx56	100	90.037	Jaculus_jaculus
ENSBTAG00000010602	DDX56	99	64.222	ENSKMAG00000016611	ddx56	99	64.222	Kryptolebias_marmoratus
ENSBTAG00000010602	DDX56	98	64.673	ENSLBEG00000026281	ddx56	98	64.728	Labrus_bergylta
ENSBTAG00000010602	DDX56	98	66.606	ENSLACG00000015551	DDX56	97	66.787	Latimeria_chalumnae
ENSBTAG00000010602	DDX56	99	63.523	ENSLOCG00000015185	ddx56	99	63.879	Lepisosteus_oculatus
ENSBTAG00000010602	DDX56	99	92.393	ENSLAFG00000018206	DDX56	99	92.208	Loxodonta_africana
ENSBTAG00000010602	DDX56	100	92.857	ENSMFAG00000041001	DDX56	100	92.857	Macaca_fascicularis
ENSBTAG00000010602	DDX56	100	93.040	ENSMMUG00000002645	DDX56	100	93.040	Macaca_mulatta
ENSBTAG00000010602	DDX56	100	93.040	ENSMNEG00000028492	DDX56	100	93.040	Macaca_nemestrina
ENSBTAG00000010602	DDX56	100	93.407	ENSMLEG00000043591	DDX56	100	93.407	Mandrillus_leucophaeus
ENSBTAG00000010602	DDX56	98	64.376	ENSMAMG00000007776	ddx56	98	64.919	Mastacembelus_armatus
ENSBTAG00000010602	DDX56	99	64.273	ENSMZEG00005009813	ddx56	99	64.632	Maylandia_zebra
ENSBTAG00000010602	DDX56	100	93.236	ENSMICG00000005550	DDX56	100	92.870	Microcebus_murinus
ENSBTAG00000010602	DDX56	100	90.476	ENSMOCG00000016782	Ddx56	100	90.476	Microtus_ochrogaster
ENSBTAG00000010602	DDX56	95	65.720	ENSMMOG00000009654	ddx56	94	69.000	Mola_mola
ENSBTAG00000010602	DDX56	100	75.774	ENSMODG00000016137	DDX56	99	75.410	Monodelphis_domestica
ENSBTAG00000010602	DDX56	68	64.879	ENSMALG00000016910	ddx56	99	64.879	Monopterus_albus
ENSBTAG00000010602	DDX56	100	89.560	MGP_CAROLIEiJ_G0016069	Ddx56	100	89.560	Mus_caroli
ENSBTAG00000010602	DDX56	100	89.560	ENSMUSG00000004393	Ddx56	100	89.560	Mus_musculus
ENSBTAG00000010602	DDX56	100	90.293	MGP_PahariEiJ_G0016822	Ddx56	100	90.293	Mus_pahari
ENSBTAG00000010602	DDX56	100	89.560	MGP_SPRETEiJ_G0016911	Ddx56	100	89.560	Mus_spretus
ENSBTAG00000010602	DDX56	100	90.476	ENSMPUG00000018196	DDX56	88	90.293	Mustela_putorius_furo
ENSBTAG00000010602	DDX56	100	92.491	ENSMLUG00000003509	DDX56	100	92.308	Myotis_lucifugus
ENSBTAG00000010602	DDX56	100	90.842	ENSNGAG00000018785	Ddx56	100	90.842	Nannospalax_galili
ENSBTAG00000010602	DDX56	92	65.209	ENSNBRG00000002656	ddx56	92	64.892	Neolamprologus_brichardi
ENSBTAG00000010602	DDX56	100	93.053	ENSNLEG00000003816	DDX56	100	93.053	Nomascus_leucogenys
ENSBTAG00000010602	DDX56	91	76.815	ENSMEUG00000006788	DDX56	100	76.815	Notamacropus_eugenii
ENSBTAG00000010602	DDX56	100	88.848	ENSOPRG00000000292	-	100	88.483	Ochotona_princeps
ENSBTAG00000010602	DDX56	69	95.200	ENSODEG00000014807	DDX56	100	95.200	Octodon_degus
ENSBTAG00000010602	DDX56	99	66.481	ENSONIG00000011509	ddx56	99	66.481	Oreochromis_niloticus
ENSBTAG00000010602	DDX56	74	70.864	ENSOANG00000015987	-	95	70.864	Ornithorhynchus_anatinus
ENSBTAG00000010602	DDX56	97	69.288	ENSOANG00000006320	-	100	66.488	Ornithorhynchus_anatinus
ENSBTAG00000010602	DDX56	100	88.665	ENSOCUG00000022918	DDX56	100	89.397	Oryctolagus_cuniculus
ENSBTAG00000010602	DDX56	99	65.771	ENSORLG00000001434	ddx56	99	65.412	Oryzias_latipes
ENSBTAG00000010602	DDX56	99	65.766	ENSORLG00020015718	ddx56	96	65.405	Oryzias_latipes_hni
ENSBTAG00000010602	DDX56	97	66.606	ENSORLG00015003004	ddx56	94	66.241	Oryzias_latipes_hsok
ENSBTAG00000010602	DDX56	99	65.771	ENSOMEG00000022072	ddx56	99	65.591	Oryzias_melastigma
ENSBTAG00000010602	DDX56	100	91.956	ENSOGAG00000009981	DDX56	100	91.956	Otolemur_garnettii
ENSBTAG00000010602	DDX56	100	99.267	ENSOARG00000015240	DDX56	100	99.267	Ovis_aries
ENSBTAG00000010602	DDX56	100	74.135	ENSPPAG00000031263	-	100	73.953	Pan_paniscus
ENSBTAG00000010602	DDX56	100	88.849	ENSPPAG00000029147	DDX56	100	88.849	Pan_paniscus
ENSBTAG00000010602	DDX56	99	90.476	ENSPPRG00000014594	DDX56	99	91.026	Panthera_pardus
ENSBTAG00000010602	DDX56	86	90.234	ENSPTIG00000019500	DDX56	92	90.021	Panthera_tigris_altaica
ENSBTAG00000010602	DDX56	100	92.687	ENSPTRG00000019147	DDX56	100	92.687	Pan_troglodytes
ENSBTAG00000010602	DDX56	94	76.448	ENSPTRG00000052765	-	100	76.255	Pan_troglodytes
ENSBTAG00000010602	DDX56	100	93.040	ENSPANG00000002446	DDX56	100	93.040	Papio_anubis
ENSBTAG00000010602	DDX56	99	64.324	ENSPKIG00000018998	ddx56	98	63.604	Paramormyrops_kingsleyae
ENSBTAG00000010602	DDX56	93	67.052	ENSPMGG00000017421	ddx56	95	67.383	Periophthalmus_magnuspinnatus
ENSBTAG00000010602	DDX56	100	84.335	ENSPCIG00000009336	DDX56	99	83.971	Phascolarctos_cinereus
ENSBTAG00000010602	DDX56	97	65.018	ENSPFOG00000018658	ddx56	97	64.899	Poecilia_formosa
ENSBTAG00000010602	DDX56	97	65.018	ENSPLAG00000019208	ddx56	97	64.899	Poecilia_latipinna
ENSBTAG00000010602	DDX56	97	65.018	ENSPMEG00000001775	ddx56	97	64.899	Poecilia_mexicana
ENSBTAG00000010602	DDX56	97	64.925	ENSPREG00000015142	ddx56	97	64.652	Poecilia_reticulata
ENSBTAG00000010602	DDX56	100	93.419	ENSPPYG00000017591	DDX56	100	93.419	Pongo_abelii
ENSBTAG00000010602	DDX56	96	90.323	ENSPCAG00000011499	DDX56	100	89.943	Procavia_capensis
ENSBTAG00000010602	DDX56	100	93.236	ENSPCOG00000024864	DDX56	100	92.870	Propithecus_coquereli
ENSBTAG00000010602	DDX56	88	93.488	ENSPVAG00000000791	DDX56	88	93.488	Pteropus_vampyrus
ENSBTAG00000010602	DDX56	99	64.452	ENSPNYG00000019212	ddx56	99	64.811	Pundamilia_nyererei
ENSBTAG00000010602	DDX56	98	63.755	ENSPNAG00000025446	ddx56	99	63.941	Pygocentrus_nattereri
ENSBTAG00000010602	DDX56	100	91.209	ENSRNOG00000004670	Ddx56	100	91.209	Rattus_norvegicus
ENSBTAG00000010602	DDX56	100	93.236	ENSRBIG00000030140	DDX56	100	93.236	Rhinopithecus_bieti
ENSBTAG00000010602	DDX56	100	92.870	ENSRROG00000044428	DDX56	100	92.870	Rhinopithecus_roxellana
ENSBTAG00000010602	DDX56	97	42.096	YLR276C	-	91	43.094	Saccharomyces_cerevisiae
ENSBTAG00000010602	DDX56	100	91.408	ENSSBOG00000034339	DDX56	100	91.408	Saimiri_boliviensis_boliviensis
ENSBTAG00000010602	DDX56	86	83.298	ENSSHAG00000016615	DDX56	99	82.875	Sarcophilus_harrisii
ENSBTAG00000010602	DDX56	98	65.636	ENSSFOG00015012795	ddx56	98	65.091	Scleropages_formosus
ENSBTAG00000010602	DDX56	97	65.217	ENSSMAG00000011280	ddx56	98	65.399	Scophthalmus_maximus
ENSBTAG00000010602	DDX56	99	63.864	ENSSDUG00000023597	ddx56	99	64.758	Seriola_dumerili
ENSBTAG00000010602	DDX56	99	63.864	ENSSLDG00000018369	ddx56	99	64.758	Seriola_lalandi_dorsalis
ENSBTAG00000010602	DDX56	75	89.971	ENSSARG00000014363	DDX56	79	87.812	Sorex_araneus
ENSBTAG00000010602	DDX56	99	69.399	ENSSPUG00000000784	DDX56	96	69.035	Sphenodon_punctatus
ENSBTAG00000010602	DDX56	92	67.906	ENSSPAG00000009392	ddx56	95	67.961	Stegastes_partitus
ENSBTAG00000010602	DDX56	100	94.891	ENSSSCG00000016745	DDX56	100	94.891	Sus_scrofa
ENSBTAG00000010602	DDX56	99	64.641	ENSTRUG00000018623	ddx56	99	64.641	Takifugu_rubripes
ENSBTAG00000010602	DDX56	99	61.770	ENSTNIG00000013593	ddx56	91	65.891	Tetraodon_nigroviridis
ENSBTAG00000010602	DDX56	100	91.209	ENSTBEG00000007119	DDX56	100	91.209	Tupaia_belangeri
ENSBTAG00000010602	DDX56	86	95.975	ENSTTRG00000010552	DDX56	100	95.975	Tursiops_truncatus
ENSBTAG00000010602	DDX56	100	92.125	ENSUAMG00000014194	DDX56	100	91.941	Ursus_americanus
ENSBTAG00000010602	DDX56	100	92.125	ENSUMAG00000009666	DDX56	100	91.941	Ursus_maritimus
ENSBTAG00000010602	DDX56	100	90.476	ENSVVUG00000011905	DDX56	100	90.293	Vulpes_vulpes
ENSBTAG00000010602	DDX56	98	66.243	ENSXETG00000019000	ddx56	99	66.788	Xenopus_tropicalis
ENSBTAG00000010602	DDX56	97	64.218	ENSXCOG00000017413	ddx56	97	64.218	Xiphophorus_couchianus
ENSBTAG00000010602	DDX56	97	64.954	ENSXMAG00000018749	ddx56	97	64.404	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005730	nucleolus	-	IEA	Component
GO:0006364	rRNA processing	-	IEA	Process