EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000010692 (Gene tree)
Gene ID: 404098
Gene Symbol: SND1
Alias: -
Full Name: Bos taurus staphylococcal nuclease and tudor domain containing 1 (SND1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 422351 bases
Position: chr4:91873756-92296106
Accession: NM_205784
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000068156	TUDOR	PF00567.24	7.8e-28	1	1
ENSBTAP00000014154	TUDOR	PF00567.24	8.2e-28	1	1
ENSBTAP00000014154	SNase	PF00565.17	9.2e-70	1	5
ENSBTAP00000014154	SNase	PF00565.17	9.2e-70	2	5
ENSBTAP00000014154	SNase	PF00565.17	9.2e-70	3	5
ENSBTAP00000014154	SNase	PF00565.17	9.2e-70	4	5
ENSBTAP00000014154	SNase	PF00565.17	9.2e-70	5	5
ENSBTAP00000068156	SNase	PF00565.17	3.8e-68	1	5
ENSBTAP00000068156	SNase	PF00565.17	3.8e-68	2	5
ENSBTAP00000068156	SNase	PF00565.17	3.8e-68	3	5
ENSBTAP00000068156	SNase	PF00565.17	3.8e-68	4	5
ENSBTAP00000068156	SNase	PF00565.17	3.8e-68	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000067068	-	2622	-	ENSBTAP00000068156	873 (aa)	-	-
ENSBTAT00000014154	-	3666	-	ENSBTAP00000014154	910 (aa)	-	Q863B3

Gene Model

Click here to download ENSBTAG00000010692's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000010692's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000010692	SND1	100	98.681	ENSG00000197157	SND1	100	98.681	Homo_sapiens
ENSBTAG00000010692	SND1	100	83.991	ENSAPOG00000017599	snd1	99	84.872	Acanthochromis_polyacanthus
ENSBTAG00000010692	SND1	100	98.355	ENSAMEG00000004664	SND1	94	98.355	Ailuropoda_melanoleuca
ENSBTAG00000010692	SND1	98	82.307	ENSACIG00000003551	snd1	99	82.183	Amphilophus_citrinellus
ENSBTAG00000010692	SND1	100	83.772	ENSAOCG00000014166	snd1	99	84.650	Amphiprion_ocellaris
ENSBTAG00000010692	SND1	100	83.772	ENSAPEG00000007067	snd1	99	84.650	Amphiprion_percula
ENSBTAG00000010692	SND1	98	83.128	ENSATEG00000018475	snd1	88	84.379	Anabas_testudineus
ENSBTAG00000010692	SND1	100	98.901	ENSANAG00000034463	SND1	100	98.901	Aotus_nancymaae
ENSBTAG00000010692	SND1	99	83.297	ENSACLG00000022897	snd1	99	84.298	Astatotilapia_calliptera
ENSBTAG00000010692	SND1	99	84.268	ENSAMXG00000016318	snd1	98	84.855	Astyanax_mexicanus
ENSBTAG00000010692	SND1	98	46.711	WBGene00006626	tsn-1	98	46.981	Caenorhabditis_elegans
ENSBTAG00000010692	SND1	100	98.681	ENSCJAG00000017668	SND1	100	98.681	Callithrix_jacchus
ENSBTAG00000010692	SND1	100	98.791	ENSCAFG00000001700	SND1	100	98.791	Canis_familiaris
ENSBTAG00000010692	SND1	100	98.791	ENSCAFG00020021639	SND1	100	98.791	Canis_lupus_dingo
ENSBTAG00000010692	SND1	100	99.560	ENSCHIG00000023390	SND1	100	99.560	Capra_hircus
ENSBTAG00000010692	SND1	73	98.592	ENSTSYG00000004979	SND1	96	98.592	Carlito_syrichta
ENSBTAG00000010692	SND1	99	85.222	ENSCAPG00000010677	SND1	98	85.268	Cavia_aperea
ENSBTAG00000010692	SND1	100	98.571	ENSCPOG00000006251	SND1	100	98.571	Cavia_porcellus
ENSBTAG00000010692	SND1	100	99.011	ENSCCAG00000036847	SND1	100	99.011	Cebus_capucinus
ENSBTAG00000010692	SND1	100	98.901	ENSCATG00000035214	SND1	100	98.901	Cercocebus_atys
ENSBTAG00000010692	SND1	100	98.242	ENSCLAG00000011796	SND1	100	98.242	Chinchilla_lanigera
ENSBTAG00000010692	SND1	100	98.901	ENSCSAG00000010182	SND1	100	98.901	Chlorocebus_sabaeus
ENSBTAG00000010692	SND1	78	91.176	ENSCHOG00000002218	SND1	86	91.176	Choloepus_hoffmanni
ENSBTAG00000010692	SND1	100	91.868	ENSCPBG00000018094	SND1	98	92.825	Chrysemys_picta_bellii
ENSBTAG00000010692	SND1	98	57.364	ENSCING00000000524	-	98	57.364	Ciona_intestinalis
ENSBTAG00000010692	SND1	99	57.866	ENSCSAVG00000008807	-	99	58.011	Ciona_savignyi
ENSBTAG00000010692	SND1	100	98.901	ENSCANG00000035119	SND1	100	98.901	Colobus_angolensis_palliatus
ENSBTAG00000010692	SND1	100	97.363	ENSCGRG00001022514	Snd1	100	97.363	Cricetulus_griseus_chok1gshd
ENSBTAG00000010692	SND1	97	97.398	ENSCGRG00000012277	Snd1	99	97.398	Cricetulus_griseus_crigri
ENSBTAG00000010692	SND1	98	84.564	ENSCSEG00000008661	snd1	98	84.564	Cynoglossus_semilaevis
ENSBTAG00000010692	SND1	100	84.211	ENSCVAG00000010316	snd1	100	83.908	Cyprinodon_variegatus
ENSBTAG00000010692	SND1	100	84.447	ENSDARG00000006766	snd1	97	87.590	Danio_rerio
ENSBTAG00000010692	SND1	97	95.716	ENSDNOG00000006795	SND1	100	95.716	Dasypus_novemcinctus
ENSBTAG00000010692	SND1	100	98.571	ENSDORG00000000336	Snd1	100	98.571	Dipodomys_ordii
ENSBTAG00000010692	SND1	98	50.378	FBgn0035121	Tudor-SN	98	50.378	Drosophila_melanogaster
ENSBTAG00000010692	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSBTAG00000010692	SND1	57	66.142	ENSEBUG00000014201	-	83	77.222	Eptatretus_burgeri
ENSBTAG00000010692	SND1	100	97.192	ENSEASG00005008513	SND1	100	97.192	Equus_asinus_asinus
ENSBTAG00000010692	SND1	100	98.791	ENSECAG00000011451	SND1	100	98.791	Equus_caballus
ENSBTAG00000010692	SND1	100	86.703	ENSEEUG00000014737	SND1	100	86.703	Erinaceus_europaeus
ENSBTAG00000010692	SND1	99	82.237	ENSELUG00000001805	snd1	95	83.166	Esox_lucius
ENSBTAG00000010692	SND1	100	98.791	ENSFCAG00000008289	SND1	100	98.791	Felis_catus
ENSBTAG00000010692	SND1	100	98.352	ENSFDAG00000015881	SND1	100	98.352	Fukomys_damarensis
ENSBTAG00000010692	SND1	99	82.309	ENSFHEG00000004093	snd1	97	84.866	Fundulus_heteroclitus
ENSBTAG00000010692	SND1	64	74.294	ENSGMOG00000018932	snd1	64	74.294	Gadus_morhua
ENSBTAG00000010692	SND1	100	84.430	ENSGAFG00000008421	snd1	99	85.344	Gambusia_affinis
ENSBTAG00000010692	SND1	100	54.072	ENSGACG00000019793	snd1	98	54.535	Gasterosteus_aculeatus
ENSBTAG00000010692	SND1	100	98.901	ENSGGOG00000009614	SND1	100	98.901	Gorilla_gorilla
ENSBTAG00000010692	SND1	99	83.811	ENSHBUG00000019135	snd1	99	84.298	Haplochromis_burtoni
ENSBTAG00000010692	SND1	100	98.242	ENSHGLG00000003618	SND1	100	98.242	Heterocephalus_glaber_female
ENSBTAG00000010692	SND1	99	97.790	ENSHGLG00100012449	SND1	100	97.790	Heterocephalus_glaber_male
ENSBTAG00000010692	SND1	100	82.895	ENSHCOG00000005266	snd1	98	84.116	Hippocampus_comes
ENSBTAG00000010692	SND1	100	82.713	ENSIPUG00000013279	snd1	98	83.648	Ictalurus_punctatus
ENSBTAG00000010692	SND1	100	98.571	ENSSTOG00000002140	SND1	100	98.571	Ictidomys_tridecemlineatus
ENSBTAG00000010692	SND1	100	98.901	ENSJJAG00000009561	Snd1	100	98.901	Jaculus_jaculus
ENSBTAG00000010692	SND1	100	83.991	ENSKMAG00000016997	snd1	98	85.011	Kryptolebias_marmoratus
ENSBTAG00000010692	SND1	100	85.235	ENSLBEG00000013563	snd1	99	83.648	Labrus_bergylta
ENSBTAG00000010692	SND1	99	85.336	ENSLOCG00000015537	snd1	98	85.336	Lepisosteus_oculatus
ENSBTAG00000010692	SND1	100	98.022	ENSLAFG00000009696	SND1	100	98.022	Loxodonta_africana
ENSBTAG00000010692	SND1	100	98.901	ENSMFAG00000038114	SND1	100	98.901	Macaca_fascicularis
ENSBTAG00000010692	SND1	100	98.901	ENSMMUG00000015432	SND1	100	98.901	Macaca_mulatta
ENSBTAG00000010692	SND1	100	98.901	ENSMNEG00000039808	SND1	100	98.901	Macaca_nemestrina
ENSBTAG00000010692	SND1	100	98.791	ENSMLEG00000029040	SND1	100	98.791	Mandrillus_leucophaeus
ENSBTAG00000010692	SND1	99	83.903	ENSMAMG00000011739	snd1	98	84.598	Mastacembelus_armatus
ENSBTAG00000010692	SND1	99	83.297	ENSMZEG00005005681	snd1	99	84.298	Maylandia_zebra
ENSBTAG00000010692	SND1	100	98.681	ENSMICG00000000097	SND1	100	98.681	Microcebus_murinus
ENSBTAG00000010692	SND1	100	98.132	ENSMOCG00000005040	Snd1	100	98.132	Microtus_ochrogaster
ENSBTAG00000010692	SND1	100	83.553	ENSMMOG00000001795	snd1	99	84.427	Mola_mola
ENSBTAG00000010692	SND1	99	95.987	ENSMODG00000015182	SND1	99	95.987	Monodelphis_domestica
ENSBTAG00000010692	SND1	100	83.443	ENSMALG00000012071	snd1	98	84.263	Monopterus_albus
ENSBTAG00000010692	SND1	100	97.802	MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	Mus_caroli
ENSBTAG00000010692	SND1	100	97.582	ENSMUSG00000001424	Snd1	100	97.582	Mus_musculus
ENSBTAG00000010692	SND1	100	97.802	MGP_PahariEiJ_G0021917	Snd1	100	97.976	Mus_pahari
ENSBTAG00000010692	SND1	100	97.802	MGP_SPRETEiJ_G0029159	Snd1	100	97.802	Mus_spretus
ENSBTAG00000010692	SND1	100	98.352	ENSMPUG00000006545	SND1	100	98.352	Mustela_putorius_furo
ENSBTAG00000010692	SND1	97	97.095	ENSMLUG00000017130	SND1	99	97.095	Myotis_lucifugus
ENSBTAG00000010692	SND1	100	98.132	ENSNGAG00000011186	Snd1	100	98.132	Nannospalax_galili
ENSBTAG00000010692	SND1	99	83.187	ENSNBRG00000006681	snd1	99	84.187	Neolamprologus_brichardi
ENSBTAG00000010692	SND1	100	98.791	ENSNLEG00000012263	SND1	100	98.870	Nomascus_leucogenys
ENSBTAG00000010692	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSBTAG00000010692	SND1	100	98.352	ENSODEG00000011502	SND1	100	98.352	Octodon_degus
ENSBTAG00000010692	SND1	99	83.187	ENSONIG00000011481	snd1	96	84.187	Oreochromis_niloticus
ENSBTAG00000010692	SND1	98	94.369	ENSOANG00000000817	SND1	99	93.757	Ornithorhynchus_anatinus
ENSBTAG00000010692	SND1	100	97.363	ENSOCUG00000001620	SND1	100	97.363	Oryctolagus_cuniculus
ENSBTAG00000010692	SND1	98	84.022	ENSORLG00000015201	snd1	98	84.022	Oryzias_latipes
ENSBTAG00000010692	SND1	98	84.134	ENSORLG00020013991	snd1	98	84.134	Oryzias_latipes_hni
ENSBTAG00000010692	SND1	98	84.134	ENSORLG00015012436	snd1	98	84.134	Oryzias_latipes_hsok
ENSBTAG00000010692	SND1	100	83.224	ENSOMEG00000006406	snd1	98	84.452	Oryzias_melastigma
ENSBTAG00000010692	SND1	100	98.355	ENSOGAG00000013356	SND1	94	98.355	Otolemur_garnettii
ENSBTAG00000010692	SND1	97	96.723	ENSOARG00000002149	SND1	100	96.723	Ovis_aries
ENSBTAG00000010692	SND1	100	98.791	ENSPPAG00000042947	SND1	100	98.791	Pan_paniscus
ENSBTAG00000010692	SND1	100	98.791	ENSPPRG00000004494	SND1	100	98.791	Panthera_pardus
ENSBTAG00000010692	SND1	100	98.681	ENSPTIG00000014214	SND1	100	98.681	Panthera_tigris_altaica
ENSBTAG00000010692	SND1	100	98.791	ENSPTRG00000023911	SND1	100	98.791	Pan_troglodytes
ENSBTAG00000010692	SND1	97	98.869	ENSPANG00000011997	SND1	99	98.869	Papio_anubis
ENSBTAG00000010692	SND1	99	81.698	ENSPKIG00000023494	snd1	98	82.020	Paramormyrops_kingsleyae
ENSBTAG00000010692	SND1	92	83.114	ENSPMGG00000003629	snd1	100	83.114	Periophthalmus_magnuspinnatus
ENSBTAG00000010692	SND1	100	98.242	ENSPEMG00000010240	Snd1	100	98.242	Peromyscus_maniculatus_bairdii
ENSBTAG00000010692	SND1	97	73.785	ENSPMAG00000007915	-	99	73.785	Petromyzon_marinus
ENSBTAG00000010692	SND1	100	96.264	ENSPCIG00000011561	SND1	100	96.264	Phascolarctos_cinereus
ENSBTAG00000010692	SND1	100	83.882	ENSPFOG00000001557	snd1	99	84.761	Poecilia_formosa
ENSBTAG00000010692	SND1	100	83.882	ENSPLAG00000018459	snd1	96	84.761	Poecilia_latipinna
ENSBTAG00000010692	SND1	100	84.320	ENSPMEG00000006803	snd1	99	85.206	Poecilia_mexicana
ENSBTAG00000010692	SND1	100	84.211	ENSPREG00000002189	snd1	99	85.095	Poecilia_reticulata
ENSBTAG00000010692	SND1	93	98.635	ENSPPYG00000017972	SND1	100	98.635	Pongo_abelii
ENSBTAG00000010692	SND1	100	86.374	ENSPCAG00000011305	SND1	99	86.288	Procavia_capensis
ENSBTAG00000010692	SND1	100	98.681	ENSPCOG00000026791	SND1	100	98.681	Propithecus_coquereli
ENSBTAG00000010692	SND1	100	96.703	ENSPVAG00000013945	SND1	100	96.703	Pteropus_vampyrus
ENSBTAG00000010692	SND1	99	83.297	ENSPNYG00000000932	snd1	99	84.298	Pundamilia_nyererei
ENSBTAG00000010692	SND1	100	83.479	ENSPNAG00000001206	snd1	98	84.444	Pygocentrus_nattereri
ENSBTAG00000010692	SND1	99	97.467	ENSRNOG00000031173	Snd1	99	97.467	Rattus_norvegicus
ENSBTAG00000010692	SND1	73	98.684	ENSRBIG00000027782	-	93	98.859	Rhinopithecus_bieti
ENSBTAG00000010692	SND1	100	98.901	ENSRROG00000033020	SND1	100	98.901	Rhinopithecus_roxellana
ENSBTAG00000010692	SND1	100	98.901	ENSSBOG00000032461	SND1	100	98.901	Saimiri_boliviensis_boliviensis
ENSBTAG00000010692	SND1	98	92.905	ENSSHAG00000015359	SND1	100	92.905	Sarcophilus_harrisii
ENSBTAG00000010692	SND1	100	82.372	ENSSFOG00015001103	snd1	98	83.463	Scleropages_formosus
ENSBTAG00000010692	SND1	98	83.893	ENSSMAG00000001932	snd1	93	83.630	Scophthalmus_maximus
ENSBTAG00000010692	SND1	100	83.772	ENSSDUG00000002699	snd1	92	84.650	Seriola_dumerili
ENSBTAG00000010692	SND1	100	76.535	ENSSLDG00000001950	snd1	98	77.308	Seriola_lalandi_dorsalis
ENSBTAG00000010692	SND1	86	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSBTAG00000010692	SND1	73	87.652	ENSSPUG00000017586	SND1	96	87.652	Sphenodon_punctatus
ENSBTAG00000010692	SND1	76	84.772	ENSSPAG00000021398	snd1	96	86.911	Stegastes_partitus
ENSBTAG00000010692	SND1	100	98.681	ENSSSCG00000016590	SND1	100	98.681	Sus_scrofa
ENSBTAG00000010692	SND1	99	83.755	ENSTRUG00000014067	snd1	98	83.781	Takifugu_rubripes
ENSBTAG00000010692	SND1	100	83.443	ENSTNIG00000011019	snd1	98	84.452	Tetraodon_nigroviridis
ENSBTAG00000010692	SND1	93	92.689	ENSTBEG00000003999	SND1	100	92.689	Tupaia_belangeri
ENSBTAG00000010692	SND1	100	93.846	ENSTTRG00000006059	SND1	100	93.846	Tursiops_truncatus
ENSBTAG00000010692	SND1	71	89.351	ENSUAMG00000002820	-	86	89.247	Ursus_americanus
ENSBTAG00000010692	SND1	91	98.859	ENSUAMG00000005604	-	93	98.859	Ursus_americanus
ENSBTAG00000010692	SND1	100	98.571	ENSUMAG00000005960	SND1	100	98.571	Ursus_maritimus
ENSBTAG00000010692	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSBTAG00000010692	SND1	100	98.571	ENSVVUG00000007226	SND1	100	98.571	Vulpes_vulpes
ENSBTAG00000010692	SND1	97	84.633	ENSXETG00000023043	snd1	100	84.554	Xenopus_tropicalis
ENSBTAG00000010692	SND1	92	81.710	ENSXCOG00000013629	snd1	99	81.710	Xiphophorus_couchianus
ENSBTAG00000010692	SND1	100	84.430	ENSXMAG00000011469	snd1	99	85.317	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004521	endoribonuclease activity	-	IEA	Function
GO:0005829	cytosol	-	IEA	Component
GO:0010564	regulation of cell cycle process	-	IEA	Process
GO:0010587	miRNA catabolic process	-	IEA	Process
GO:0016442	RISC complex	-	IEA	Component
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0042470	melanosome	-	IEA	Component
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process
GO:0097433	dense body	-	IEA	Component
GO:1905172	RISC complex binding	-	IEA	Function