EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000011070 (Gene tree)
Gene ID: 525106
Gene Symbol: RTCB
Alias: -
Full Name: Bos taurus RNA 2'%2C3'-cyclic phosphate and 5'-OH ligase (RTCB)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 21379 bases
Position: chr5:71017594-71038972
Accession: NM_001015631
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000014699	RtcB	PF01139.17	8.6e-146	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000014699	-	2563	-	ENSBTAP00000014699	505 (aa)	-	Q5E9T9

Gene Model

Click here to download ENSBTAG00000011070's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000011070's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000011070	RTCB	100	99.604	ENSG00000100220	RTCB	100	99.604	Homo_sapiens
ENSBTAG00000011070	RTCB	100	94.851	ENSAPOG00000006040	rtcb	100	94.851	Acanthochromis_polyacanthus
ENSBTAG00000011070	RTCB	100	99.406	ENSAMEG00000016152	RTCB	100	99.406	Ailuropoda_melanoleuca
ENSBTAG00000011070	RTCB	100	90.693	ENSACIG00000009083	rtcb	100	90.693	Amphilophus_citrinellus
ENSBTAG00000011070	RTCB	100	95.050	ENSAOCG00000005662	rtcb	100	95.435	Amphiprion_ocellaris
ENSBTAG00000011070	RTCB	96	89.938	ENSAPEG00000024653	rtcb	100	89.938	Amphiprion_percula
ENSBTAG00000011070	RTCB	100	95.050	ENSAPEG00000024701	rtcb	100	95.050	Amphiprion_percula
ENSBTAG00000011070	RTCB	100	94.653	ENSATEG00000000618	rtcb	100	94.653	Anabas_testudineus
ENSBTAG00000011070	RTCB	100	93.834	ENSACAG00000014817	RTCB	100	93.834	Anolis_carolinensis
ENSBTAG00000011070	RTCB	72	97.222	ENSANAG00000023724	-	100	62.648	Aotus_nancymaae
ENSBTAG00000011070	RTCB	100	83.564	ENSANAG00000018191	-	91	83.564	Aotus_nancymaae
ENSBTAG00000011070	RTCB	100	93.663	ENSACLG00000008367	rtcb	100	94.130	Astatotilapia_calliptera
ENSBTAG00000011070	RTCB	100	94.653	ENSAMXG00000042320	rtcb	100	94.653	Astyanax_mexicanus
ENSBTAG00000011070	RTCB	100	73.267	WBGene00008877	rtcb-1	100	73.267	Caenorhabditis_elegans
ENSBTAG00000011070	RTCB	100	99.208	ENSCJAG00000006128	RTCB	100	99.208	Callithrix_jacchus
ENSBTAG00000011070	RTCB	100	99.406	ENSCAFG00000001785	RTCB	100	99.406	Canis_familiaris
ENSBTAG00000011070	RTCB	100	95.050	ENSCAFG00000010789	-	100	95.050	Canis_familiaris
ENSBTAG00000011070	RTCB	100	99.406	ENSCAFG00020004890	-	100	99.406	Canis_lupus_dingo
ENSBTAG00000011070	RTCB	87	95.682	ENSCAFG00020018953	-	99	95.682	Canis_lupus_dingo
ENSBTAG00000011070	RTCB	100	99.802	ENSCHIG00000027009	-	100	99.802	Capra_hircus
ENSBTAG00000011070	RTCB	100	99.010	ENSTSYG00000012320	RTCB	100	99.010	Carlito_syrichta
ENSBTAG00000011070	RTCB	94	98.952	ENSCAPG00000011647	RTCB	96	98.952	Cavia_aperea
ENSBTAG00000011070	RTCB	100	99.208	ENSCCAG00000000618	RTCB	100	99.208	Cebus_capucinus
ENSBTAG00000011070	RTCB	100	99.604	ENSCATG00000033424	RTCB	100	99.604	Cercocebus_atys
ENSBTAG00000011070	RTCB	100	99.406	ENSCLAG00000007997	RTCB	100	99.406	Chinchilla_lanigera
ENSBTAG00000011070	RTCB	100	99.406	ENSCSAG00000008351	RTCB	100	99.406	Chlorocebus_sabaeus
ENSBTAG00000011070	RTCB	100	84.752	ENSCHOG00000009123	RTCB	100	84.752	Choloepus_hoffmanni
ENSBTAG00000011070	RTCB	100	96.634	ENSCPBG00000023184	RTCB	100	96.634	Chrysemys_picta_bellii
ENSBTAG00000011070	RTCB	100	81.782	ENSCING00000003830	-	100	81.782	Ciona_intestinalis
ENSBTAG00000011070	RTCB	100	82.178	ENSCSAVG00000008124	-	99	82.178	Ciona_savignyi
ENSBTAG00000011070	RTCB	100	95.842	ENSCANG00000001891	RTCB	100	95.842	Colobus_angolensis_palliatus
ENSBTAG00000011070	RTCB	100	99.010	ENSCGRG00001011173	Rtcb	100	99.010	Cricetulus_griseus_chok1gshd
ENSBTAG00000011070	RTCB	99	94.036	ENSCGRG00000009587	-	99	94.036	Cricetulus_griseus_crigri
ENSBTAG00000011070	RTCB	100	94.257	ENSCSEG00000003986	rtcb	100	94.257	Cynoglossus_semilaevis
ENSBTAG00000011070	RTCB	82	93.269	ENSCVAG00000000569	rtcb	95	93.269	Cyprinodon_variegatus
ENSBTAG00000011070	RTCB	100	94.059	ENSDARG00000101047	rtcb	100	94.059	Danio_rerio
ENSBTAG00000011070	RTCB	80	96.314	ENSDNOG00000012425	RTCB	99	96.314	Dasypus_novemcinctus
ENSBTAG00000011070	RTCB	100	98.614	ENSDORG00000010855	Rtcb	100	98.614	Dipodomys_ordii
ENSBTAG00000011070	RTCB	99	85.686	FBgn0032781	RtcB	99	85.686	Drosophila_melanogaster
ENSBTAG00000011070	RTCB	100	92.673	ENSETEG00000001988	RTCB	100	92.673	Echinops_telfairi
ENSBTAG00000011070	RTCB	100	85.743	ENSEBUG00000014235	rtcb	100	85.743	Eptatretus_burgeri
ENSBTAG00000011070	RTCB	100	99.406	ENSEASG00005019059	RTCB	100	99.406	Equus_asinus_asinus
ENSBTAG00000011070	RTCB	100	99.406	ENSECAG00000023998	RTCB	100	99.406	Equus_caballus
ENSBTAG00000011070	RTCB	89	90.157	ENSEEUG00000006251	RTCB	100	90.157	Erinaceus_europaeus
ENSBTAG00000011070	RTCB	100	82.798	ENSELUG00000009275	rtcb	100	82.798	Esox_lucius
ENSBTAG00000011070	RTCB	100	99.604	ENSFCAG00000026480	RTCB	100	99.604	Felis_catus
ENSBTAG00000011070	RTCB	100	97.624	ENSFALG00000013334	RTCB	100	97.624	Ficedula_albicollis
ENSBTAG00000011070	RTCB	100	99.406	ENSFDAG00000018150	RTCB	100	99.406	Fukomys_damarensis
ENSBTAG00000011070	RTCB	100	94.653	ENSFHEG00000009595	rtcb	100	94.653	Fundulus_heteroclitus
ENSBTAG00000011070	RTCB	100	91.881	ENSGMOG00000018882	rtcb	100	91.881	Gadus_morhua
ENSBTAG00000011070	RTCB	100	97.426	ENSGALG00000012611	RTCB	100	97.426	Gallus_gallus
ENSBTAG00000011070	RTCB	100	95.050	ENSGAFG00000004198	rtcb	100	95.050	Gambusia_affinis
ENSBTAG00000011070	RTCB	100	93.663	ENSGACG00000000586	rtcb	100	93.663	Gasterosteus_aculeatus
ENSBTAG00000011070	RTCB	93	95.745	ENSGAGG00000019133	RTCB	98	95.745	Gopherus_agassizii
ENSBTAG00000011070	RTCB	100	99.604	ENSGGOG00000011402	RTCB	100	99.604	Gorilla_gorilla
ENSBTAG00000011070	RTCB	100	93.663	ENSHBUG00000020571	rtcb	100	93.663	Haplochromis_burtoni
ENSBTAG00000011070	RTCB	93	70.339	ENSHGLG00000001066	-	99	70.339	Heterocephalus_glaber_female
ENSBTAG00000011070	RTCB	100	99.406	ENSHGLG00000004492	RTCB	100	99.406	Heterocephalus_glaber_female
ENSBTAG00000011070	RTCB	100	99.406	ENSHGLG00100008965	RTCB	100	99.406	Heterocephalus_glaber_male
ENSBTAG00000011070	RTCB	100	91.519	ENSHCOG00000006450	rtcb	100	91.519	Hippocampus_comes
ENSBTAG00000011070	RTCB	100	94.851	ENSIPUG00000015443	rtcb	100	94.851	Ictalurus_punctatus
ENSBTAG00000011070	RTCB	100	99.208	ENSSTOG00000003878	RTCB	100	99.208	Ictidomys_tridecemlineatus
ENSBTAG00000011070	RTCB	100	99.010	ENSJJAG00000010667	Rtcb	100	99.010	Jaculus_jaculus
ENSBTAG00000011070	RTCB	100	94.455	ENSKMAG00000013178	rtcb	100	94.455	Kryptolebias_marmoratus
ENSBTAG00000011070	RTCB	100	93.465	ENSLBEG00000000214	rtcb	100	93.465	Labrus_bergylta
ENSBTAG00000011070	RTCB	100	94.455	ENSLBEG00000010566	RTCB	100	94.455	Labrus_bergylta
ENSBTAG00000011070	RTCB	100	95.644	ENSLACG00000013033	RTCB	100	95.644	Latimeria_chalumnae
ENSBTAG00000011070	RTCB	100	94.851	ENSLOCG00000016515	rtcb	99	94.851	Lepisosteus_oculatus
ENSBTAG00000011070	RTCB	100	98.416	ENSLAFG00000002082	RTCB	100	98.416	Loxodonta_africana
ENSBTAG00000011070	RTCB	100	99.406	ENSMFAG00000034419	RTCB	100	99.406	Macaca_fascicularis
ENSBTAG00000011070	RTCB	100	99.406	ENSMMUG00000006720	RTCB	100	99.406	Macaca_mulatta
ENSBTAG00000011070	RTCB	100	99.406	ENSMNEG00000040669	RTCB	100	99.406	Macaca_nemestrina
ENSBTAG00000011070	RTCB	100	99.604	ENSMLEG00000040505	RTCB	100	99.604	Mandrillus_leucophaeus
ENSBTAG00000011070	RTCB	100	94.851	ENSMAMG00000020676	rtcb	100	94.851	Mastacembelus_armatus
ENSBTAG00000011070	RTCB	100	93.663	ENSMZEG00005018942	rtcb	100	93.663	Maylandia_zebra
ENSBTAG00000011070	RTCB	100	97.041	ENSMGAG00000012805	RTCB	100	97.041	Meleagris_gallopavo
ENSBTAG00000011070	RTCB	60	100.000	ENSMAUG00000008301	Rtcb	100	100.000	Mesocricetus_auratus
ENSBTAG00000011070	RTCB	100	79.802	ENSMICG00000036677	-	100	79.802	Microcebus_murinus
ENSBTAG00000011070	RTCB	100	99.406	ENSMICG00000013303	-	100	99.406	Microcebus_murinus
ENSBTAG00000011070	RTCB	100	99.010	ENSMOCG00000002440	Rtcb	100	99.010	Microtus_ochrogaster
ENSBTAG00000011070	RTCB	100	94.851	ENSMMOG00000005987	rtcb	100	94.851	Mola_mola
ENSBTAG00000011070	RTCB	100	98.416	ENSMODG00000001414	RTCB	100	98.416	Monodelphis_domestica
ENSBTAG00000011070	RTCB	100	94.653	ENSMALG00000007603	rtcb	100	94.653	Monopterus_albus
ENSBTAG00000011070	RTCB	100	99.010	MGP_CAROLIEiJ_G0015689	Rtcb	100	99.010	Mus_caroli
ENSBTAG00000011070	RTCB	100	99.010	ENSMUSG00000001783	Rtcb	100	99.010	Mus_musculus
ENSBTAG00000011070	RTCB	100	99.010	MGP_PahariEiJ_G0031396	Rtcb	100	99.010	Mus_pahari
ENSBTAG00000011070	RTCB	100	99.010	MGP_SPRETEiJ_G0016507	Rtcb	100	99.010	Mus_spretus
ENSBTAG00000011070	RTCB	100	99.406	ENSMPUG00000012285	RTCB	100	99.406	Mustela_putorius_furo
ENSBTAG00000011070	RTCB	100	96.647	ENSMLUG00000007803	RTCB	100	96.647	Myotis_lucifugus
ENSBTAG00000011070	RTCB	75	100.000	ENSNGAG00000005093	Rtcb	100	100.000	Nannospalax_galili
ENSBTAG00000011070	RTCB	100	93.663	ENSNBRG00000017202	rtcb	100	93.663	Neolamprologus_brichardi
ENSBTAG00000011070	RTCB	100	99.604	ENSNLEG00000004960	RTCB	100	99.604	Nomascus_leucogenys
ENSBTAG00000011070	RTCB	100	73.069	ENSMEUG00000007809	-	100	73.069	Notamacropus_eugenii
ENSBTAG00000011070	RTCB	73	100.000	ENSOPRG00000003488	RTCB	79	100.000	Ochotona_princeps
ENSBTAG00000011070	RTCB	82	100.000	ENSODEG00000013033	-	100	100.000	Octodon_degus
ENSBTAG00000011070	RTCB	100	65.941	ENSODEG00000005042	-	100	65.941	Octodon_degus
ENSBTAG00000011070	RTCB	100	94.257	ENSONIG00000007474	rtcb	100	94.257	Oreochromis_niloticus
ENSBTAG00000011070	RTCB	100	98.416	ENSOANG00000005524	RTCB	100	98.416	Ornithorhynchus_anatinus
ENSBTAG00000011070	RTCB	93	99.149	ENSOCUG00000008270	RTCB	96	99.149	Oryctolagus_cuniculus
ENSBTAG00000011070	RTCB	100	94.059	ENSORLG00000020093	rtcb	100	94.059	Oryzias_latipes
ENSBTAG00000011070	RTCB	100	94.059	ENSORLG00020003706	rtcb	100	94.059	Oryzias_latipes_hni
ENSBTAG00000011070	RTCB	100	94.257	ENSORLG00015002968	rtcb	100	94.257	Oryzias_latipes_hsok
ENSBTAG00000011070	RTCB	100	93.861	ENSOMEG00000021278	rtcb	100	93.861	Oryzias_melastigma
ENSBTAG00000011070	RTCB	100	98.812	ENSOGAG00000001425	RTCB	100	98.812	Otolemur_garnettii
ENSBTAG00000011070	RTCB	100	99.802	ENSOARG00000018008	RTCB	100	99.802	Ovis_aries
ENSBTAG00000011070	RTCB	100	99.604	ENSPPAG00000028667	RTCB	100	99.604	Pan_paniscus
ENSBTAG00000011070	RTCB	100	99.604	ENSPPRG00000004038	RTCB	100	99.604	Panthera_pardus
ENSBTAG00000011070	RTCB	94	96.211	ENSPTIG00000020499	RTCB	97	96.211	Panthera_tigris_altaica
ENSBTAG00000011070	RTCB	100	99.604	ENSPTRG00000014287	RTCB	100	99.604	Pan_troglodytes
ENSBTAG00000011070	RTCB	100	99.406	ENSPANG00000016035	RTCB	100	99.406	Papio_anubis
ENSBTAG00000011070	RTCB	100	93.267	ENSPKIG00000001881	rtcb	100	93.267	Paramormyrops_kingsleyae
ENSBTAG00000011070	RTCB	91	98.043	ENSPSIG00000011690	RTCB	100	98.043	Pelodiscus_sinensis
ENSBTAG00000011070	RTCB	100	95.050	ENSPMGG00000016672	rtcb	100	95.050	Periophthalmus_magnuspinnatus
ENSBTAG00000011070	RTCB	100	99.010	ENSPEMG00000019548	Rtcb	100	99.010	Peromyscus_maniculatus_bairdii
ENSBTAG00000011070	RTCB	100	91.683	ENSPMAG00000005657	rtcb	100	91.683	Petromyzon_marinus
ENSBTAG00000011070	RTCB	100	98.812	ENSPCIG00000009467	RTCB	100	98.812	Phascolarctos_cinereus
ENSBTAG00000011070	RTCB	100	95.446	ENSPFOG00000003058	rtcb	100	95.446	Poecilia_formosa
ENSBTAG00000011070	RTCB	100	95.248	ENSPLAG00000017663	rtcb	100	95.248	Poecilia_latipinna
ENSBTAG00000011070	RTCB	100	95.446	ENSPMEG00000006227	rtcb	100	95.446	Poecilia_mexicana
ENSBTAG00000011070	RTCB	100	95.050	ENSPREG00000018467	rtcb	100	95.050	Poecilia_reticulata
ENSBTAG00000011070	RTCB	100	99.604	ENSPPYG00000011752	RTCB	100	99.604	Pongo_abelii
ENSBTAG00000011070	RTCB	93	80.932	ENSPCAG00000013641	RTCB	100	80.932	Procavia_capensis
ENSBTAG00000011070	RTCB	100	99.604	ENSPCOG00000017243	RTCB	100	99.604	Propithecus_coquereli
ENSBTAG00000011070	RTCB	93	98.511	ENSPVAG00000002380	RTCB	100	98.511	Pteropus_vampyrus
ENSBTAG00000011070	RTCB	100	93.663	ENSPNYG00000022760	rtcb	100	93.663	Pundamilia_nyererei
ENSBTAG00000011070	RTCB	100	95.248	ENSPNAG00000009209	rtcb	100	95.248	Pygocentrus_nattereri
ENSBTAG00000011070	RTCB	100	99.010	ENSRNOG00000004813	Rtcb	100	99.010	Rattus_norvegicus
ENSBTAG00000011070	RTCB	100	90.711	ENSRBIG00000042090	RTCB	100	90.711	Rhinopithecus_bieti
ENSBTAG00000011070	RTCB	100	94.455	ENSSBOG00000020085	-	100	94.455	Saimiri_boliviensis_boliviensis
ENSBTAG00000011070	RTCB	94	99.578	ENSSHAG00000016277	RTCB	100	99.578	Sarcophilus_harrisii
ENSBTAG00000011070	RTCB	100	93.861	ENSSFOG00015011572	RTCB	100	93.861	Scleropages_formosus
ENSBTAG00000011070	RTCB	100	92.871	ENSSFOG00015000763	rtcb	100	92.871	Scleropages_formosus
ENSBTAG00000011070	RTCB	100	90.693	ENSSMAG00000005096	rtcb	100	90.693	Scophthalmus_maximus
ENSBTAG00000011070	RTCB	100	94.059	ENSSDUG00000012605	rtcb	100	94.059	Seriola_dumerili
ENSBTAG00000011070	RTCB	100	94.257	ENSSLDG00000019458	rtcb	100	94.257	Seriola_lalandi_dorsalis
ENSBTAG00000011070	RTCB	66	100.000	ENSSARG00000004799	-	70	100.000	Sorex_araneus
ENSBTAG00000011070	RTCB	100	96.238	ENSSPUG00000012814	RTCB	100	96.238	Sphenodon_punctatus
ENSBTAG00000011070	RTCB	100	95.050	ENSSPAG00000004623	rtcb	100	95.050	Stegastes_partitus
ENSBTAG00000011070	RTCB	100	99.604	ENSSSCG00000000158	RTCB	100	99.604	Sus_scrofa
ENSBTAG00000011070	RTCB	100	97.624	ENSTGUG00000010947	RTCB	99	97.624	Taeniopygia_guttata
ENSBTAG00000011070	RTCB	91	95.435	ENSTRUG00000009880	rtcb	100	95.435	Takifugu_rubripes
ENSBTAG00000011070	RTCB	100	93.267	ENSTNIG00000002484	rtcb	100	93.267	Tetraodon_nigroviridis
ENSBTAG00000011070	RTCB	100	85.941	ENSTBEG00000004418	RTCB	100	85.941	Tupaia_belangeri
ENSBTAG00000011070	RTCB	93	98.511	ENSTTRG00000006417	RTCB	100	98.511	Tursiops_truncatus
ENSBTAG00000011070	RTCB	100	99.406	ENSUAMG00000022792	RTCB	100	99.406	Ursus_americanus
ENSBTAG00000011070	RTCB	100	99.406	ENSUMAG00000017225	RTCB	100	99.406	Ursus_maritimus
ENSBTAG00000011070	RTCB	100	99.406	ENSVPAG00000005375	RTCB	100	99.406	Vicugna_pacos
ENSBTAG00000011070	RTCB	100	99.406	ENSVVUG00000023408	RTCB	100	99.754	Vulpes_vulpes
ENSBTAG00000011070	RTCB	100	94.653	ENSXETG00000011523	rtcb	100	94.653	Xenopus_tropicalis
ENSBTAG00000011070	RTCB	100	95.050	ENSXMAG00000002855	rtcb	100	95.050	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001701	in utero embryonic development	-	IEA	Process
GO:0001890	placenta development	-	IEA	Process
GO:0003972	RNA ligase (ATP) activity	-	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005635	nuclear envelope	-	IEA	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0005789	endoplasmic reticulum membrane	-	IEA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISS	Process
GO:0017166	vinculin binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0072669	tRNA-splicing ligase complex	-	ISS	Component