EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000011524 (Gene tree)
Gene ID: 540834
Gene Symbol: XRN1
Alias: -
Full Name: Bos taurus 5'-3' exoribonuclease 1 (XRN1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 107716 bases
Position: chr1:126593243-126700958
Accession: NM_001206035
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000015318	XRN_N	PF03159.18	3.1e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000015318	-	5178	-	ENSBTAP00000015318	1703 (aa)	-	E1BMZ8

Gene Model

Click here to download ENSBTAG00000011524's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03008	Ribosome biogenesis in eukaryotes	KEGG
bta03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000011524's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000011524	XRN1	100	91.857	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSBTAG00000011524	XRN1	95	72.868	ENSAPOG00000000622	xrn1	98	72.683	Acanthochromis_polyacanthus
ENSBTAG00000011524	XRN1	100	91.476	ENSAMEG00000012538	XRN1	100	91.476	Ailuropoda_melanoleuca
ENSBTAG00000011524	XRN1	95	72.484	ENSACIG00000001057	xrn1	98	72.439	Amphilophus_citrinellus
ENSBTAG00000011524	XRN1	100	61.133	ENSAOCG00000014097	xrn1	86	83.607	Amphiprion_ocellaris
ENSBTAG00000011524	XRN1	100	61.036	ENSAPEG00000006620	xrn1	100	60.752	Amphiprion_percula
ENSBTAG00000011524	XRN1	95	70.804	ENSATEG00000009752	xrn1	99	70.714	Anabas_testudineus
ENSBTAG00000011524	XRN1	99	75.159	ENSAPLG00000004905	XRN1	100	74.697	Anas_platyrhynchos
ENSBTAG00000011524	XRN1	100	72.051	ENSACAG00000004985	XRN1	100	71.548	Anolis_carolinensis
ENSBTAG00000011524	XRN1	100	91.974	ENSANAG00000029013	XRN1	99	95.057	Aotus_nancymaae
ENSBTAG00000011524	XRN1	100	60.090	ENSACLG00000004806	xrn1	99	60.508	Astatotilapia_calliptera
ENSBTAG00000011524	XRN1	99	60.149	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSBTAG00000011524	XRN1	71	39.422	WBGene00012730	xrn-1	80	38.690	Caenorhabditis_elegans
ENSBTAG00000011524	XRN1	100	91.857	ENSCJAG00000001872	XRN1	100	91.857	Callithrix_jacchus
ENSBTAG00000011524	XRN1	100	93.087	ENSCAFG00000007783	XRN1	100	93.146	Canis_familiaris
ENSBTAG00000011524	XRN1	100	91.743	ENSCAFG00020009120	XRN1	99	98.204	Canis_lupus_dingo
ENSBTAG00000011524	XRN1	99	95.627	ENSCHIG00000019192	XRN1	99	95.627	Capra_hircus
ENSBTAG00000011524	XRN1	100	91.686	ENSTSYG00000002705	XRN1	100	91.686	Carlito_syrichta
ENSBTAG00000011524	XRN1	55	75.456	ENSCAPG00000004604	-	99	75.456	Cavia_aperea
ENSBTAG00000011524	XRN1	100	92.326	ENSCCAG00000034800	XRN1	99	96.108	Cebus_capucinus
ENSBTAG00000011524	XRN1	100	92.209	ENSCATG00000041794	XRN1	100	92.384	Cercocebus_atys
ENSBTAG00000011524	XRN1	100	85.567	ENSCLAG00000001451	XRN1	99	95.246	Chinchilla_lanigera
ENSBTAG00000011524	XRN1	100	92.267	ENSCSAG00000011265	XRN1	100	92.443	Chlorocebus_sabaeus
ENSBTAG00000011524	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSBTAG00000011524	XRN1	70	45.207	ENSCSAVG00000008584	-	98	44.895	Ciona_savignyi
ENSBTAG00000011524	XRN1	100	92.384	ENSCANG00000037495	XRN1	99	96.707	Colobus_angolensis_palliatus
ENSBTAG00000011524	XRN1	100	86.625	ENSCGRG00001019411	Xrn1	99	94.612	Cricetulus_griseus_chok1gshd
ENSBTAG00000011524	XRN1	100	86.625	ENSCGRG00000012464	Xrn1	99	94.612	Cricetulus_griseus_crigri
ENSBTAG00000011524	XRN1	100	55.599	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSBTAG00000011524	XRN1	66	72.487	ENSCVAG00000013089	xrn1	99	72.222	Cyprinodon_variegatus
ENSBTAG00000011524	XRN1	99	62.472	ENSDARG00000091652	xrn1	98	79.747	Danio_rerio
ENSBTAG00000011524	XRN1	100	86.233	ENSDORG00000013833	Xrn1	100	86.233	Dipodomys_ordii
ENSBTAG00000011524	XRN1	75	39.445	FBgn0020261	pcm	72	40.954	Drosophila_melanogaster
ENSBTAG00000011524	XRN1	86	99.099	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSBTAG00000011524	XRN1	100	92.912	ENSEASG00005002687	XRN1	99	96.707	Equus_asinus_asinus
ENSBTAG00000011524	XRN1	100	92.912	ENSECAG00000008301	XRN1	100	93.087	Equus_caballus
ENSBTAG00000011524	XRN1	92	82.893	ENSEEUG00000011323	XRN1	92	82.893	Erinaceus_europaeus
ENSBTAG00000011524	XRN1	100	60.732	ENSELUG00000000169	xrn1	100	61.061	Esox_lucius
ENSBTAG00000011524	XRN1	100	89.696	ENSFCAG00000027589	XRN1	99	96.484	Felis_catus
ENSBTAG00000011524	XRN1	100	73.954	ENSFALG00000007021	XRN1	100	73.508	Ficedula_albicollis
ENSBTAG00000011524	XRN1	100	87.342	ENSFDAG00000020494	XRN1	99	94.295	Fukomys_damarensis
ENSBTAG00000011524	XRN1	84	68.090	ENSGMOG00000006396	xrn1	83	67.504	Gadus_morhua
ENSBTAG00000011524	XRN1	100	74.134	ENSGALG00000002706	XRN1	100	73.687	Gallus_gallus
ENSBTAG00000011524	XRN1	100	59.091	ENSGACG00000014328	xrn1	100	59.541	Gasterosteus_aculeatus
ENSBTAG00000011524	XRN1	95	77.392	ENSGAGG00000017535	XRN1	99	77.033	Gopherus_agassizii
ENSBTAG00000011524	XRN1	100	92.209	ENSGGOG00000008047	XRN1	100	92.209	Gorilla_gorilla
ENSBTAG00000011524	XRN1	100	59.794	ENSHBUG00000005908	xrn1	98	72.541	Haplochromis_burtoni
ENSBTAG00000011524	XRN1	100	88.094	ENSHGLG00000014476	XRN1	99	95.509	Heterocephalus_glaber_female
ENSBTAG00000011524	XRN1	100	88.094	ENSHGLG00100015130	XRN1	99	95.509	Heterocephalus_glaber_male
ENSBTAG00000011524	XRN1	96	71.337	ENSHCOG00000014062	xrn1	99	69.844	Hippocampus_comes
ENSBTAG00000011524	XRN1	99	62.156	ENSIPUG00000015229	xrn1	99	62.178	Ictalurus_punctatus
ENSBTAG00000011524	XRN1	100	89.628	ENSSTOG00000013552	XRN1	99	96.707	Ictidomys_tridecemlineatus
ENSBTAG00000011524	XRN1	98	85.233	ENSJJAG00000010863	Xrn1	99	93.713	Jaculus_jaculus
ENSBTAG00000011524	XRN1	94	61.185	ENSKMAG00000021356	xrn1	94	74.843	Kryptolebias_marmoratus
ENSBTAG00000011524	XRN1	100	59.650	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSBTAG00000011524	XRN1	100	68.754	ENSLACG00000009020	XRN1	100	68.605	Latimeria_chalumnae
ENSBTAG00000011524	XRN1	100	65.235	ENSLOCG00000007944	xrn1	100	64.948	Lepisosteus_oculatus
ENSBTAG00000011524	XRN1	63	94.949	ENSLAFG00000015426	XRN1	100	94.949	Loxodonta_africana
ENSBTAG00000011524	XRN1	100	92.326	ENSMFAG00000032599	XRN1	100	92.501	Macaca_fascicularis
ENSBTAG00000011524	XRN1	100	92.267	ENSMMUG00000014038	XRN1	100	92.443	Macaca_mulatta
ENSBTAG00000011524	XRN1	100	92.091	ENSMNEG00000034217	XRN1	100	92.267	Macaca_nemestrina
ENSBTAG00000011524	XRN1	94	70.741	ENSMAMG00000013219	xrn1	94	77.049	Mastacembelus_armatus
ENSBTAG00000011524	XRN1	100	60.045	ENSMZEG00005015099	xrn1	99	60.407	Maylandia_zebra
ENSBTAG00000011524	XRN1	99	73.860	ENSMGAG00000006333	XRN1	100	73.456	Meleagris_gallopavo
ENSBTAG00000011524	XRN1	100	92.168	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSBTAG00000011524	XRN1	57	93.819	ENSMOCG00000008665	Xrn1	99	93.819	Microtus_ochrogaster
ENSBTAG00000011524	XRN1	100	82.332	ENSMODG00000021236	XRN1	100	82.274	Monodelphis_domestica
ENSBTAG00000011524	XRN1	100	56.973	ENSMALG00000004098	xrn1	100	58.107	Monopterus_albus
ENSBTAG00000011524	XRN1	96	93.365	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSBTAG00000011524	XRN1	100	85.132	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSBTAG00000011524	XRN1	100	85.419	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSBTAG00000011524	XRN1	100	85.189	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSBTAG00000011524	XRN1	100	93.732	ENSMPUG00000012040	XRN1	100	93.907	Mustela_putorius_furo
ENSBTAG00000011524	XRN1	100	88.876	ENSMLUG00000016885	XRN1	100	88.876	Myotis_lucifugus
ENSBTAG00000011524	XRN1	57	94.311	ENSNGAG00000023964	Xrn1	99	90.571	Nannospalax_galili
ENSBTAG00000011524	XRN1	100	92.091	ENSNLEG00000004726	XRN1	100	92.267	Nomascus_leucogenys
ENSBTAG00000011524	XRN1	77	98.969	ENSMEUG00000014473	-	73	99.029	Notamacropus_eugenii
ENSBTAG00000011524	XRN1	79	84.051	ENSOPRG00000007337	-	79	84.051	Ochotona_princeps
ENSBTAG00000011524	XRN1	100	61.013	ENSONIG00000016673	xrn1	99	64.633	Oreochromis_niloticus
ENSBTAG00000011524	XRN1	92	77.448	ENSOANG00000006735	XRN1	100	77.385	Ornithorhynchus_anatinus
ENSBTAG00000011524	XRN1	100	89.450	ENSOCUG00000001861	XRN1	100	89.450	Oryctolagus_cuniculus
ENSBTAG00000011524	XRN1	100	61.786	ENSORLG00000013005	xrn1	100	60.694	Oryzias_latipes
ENSBTAG00000011524	XRN1	100	61.183	ENSORLG00020005559	xrn1	100	61.334	Oryzias_latipes_hni
ENSBTAG00000011524	XRN1	100	61.070	ENSORLG00015022523	xrn1	100	61.243	Oryzias_latipes_hsok
ENSBTAG00000011524	XRN1	95	72.602	ENSOMEG00000015397	xrn1	100	72.705	Oryzias_melastigma
ENSBTAG00000011524	XRN1	100	89.690	ENSOGAG00000000170	XRN1	100	89.690	Otolemur_garnettii
ENSBTAG00000011524	XRN1	99	99.236	ENSOARG00000006343	XRN1	99	99.236	Ovis_aries
ENSBTAG00000011524	XRN1	100	91.974	ENSPPAG00000010180	XRN1	100	91.974	Pan_paniscus
ENSBTAG00000011524	XRN1	100	93.384	ENSPPRG00000007125	XRN1	100	93.560	Panthera_pardus
ENSBTAG00000011524	XRN1	100	93.384	ENSPTIG00000021081	XRN1	100	93.560	Panthera_tigris_altaica
ENSBTAG00000011524	XRN1	100	92.033	ENSPTRG00000015482	XRN1	100	92.033	Pan_troglodytes
ENSBTAG00000011524	XRN1	100	92.326	ENSPANG00000010638	XRN1	100	92.326	Papio_anubis
ENSBTAG00000011524	XRN1	100	75.850	ENSPSIG00000018050	XRN1	100	75.737	Pelodiscus_sinensis
ENSBTAG00000011524	XRN1	57	76.766	ENSPMGG00000002648	xrn1	98	76.777	Periophthalmus_magnuspinnatus
ENSBTAG00000011524	XRN1	57	94.453	ENSPEMG00000020610	Xrn1	99	94.453	Peromyscus_maniculatus_bairdii
ENSBTAG00000011524	XRN1	65	50.211	ENSPMAG00000002975	xrn1	91	77.874	Petromyzon_marinus
ENSBTAG00000011524	XRN1	100	81.505	ENSPCIG00000028735	XRN1	99	89.576	Phascolarctos_cinereus
ENSBTAG00000011524	XRN1	90	64.611	ENSPFOG00000013932	xrn1	99	64.763	Poecilia_formosa
ENSBTAG00000011524	XRN1	90	63.487	ENSPLAG00000021653	xrn1	99	64.150	Poecilia_latipinna
ENSBTAG00000011524	XRN1	88	63.701	ENSPMEG00000003076	xrn1	95	64.508	Poecilia_mexicana
ENSBTAG00000011524	XRN1	100	60.271	ENSPREG00000021147	xrn1	100	61.303	Poecilia_reticulata
ENSBTAG00000011524	XRN1	100	91.916	ENSPPYG00000014172	XRN1	100	91.916	Pongo_abelii
ENSBTAG00000011524	XRN1	90	82.189	ENSPCAG00000005638	XRN1	100	82.189	Procavia_capensis
ENSBTAG00000011524	XRN1	100	92.389	ENSPCOG00000013089	XRN1	99	97.006	Propithecus_coquereli
ENSBTAG00000011524	XRN1	96	91.941	ENSPVAG00000016265	XRN1	96	91.941	Pteropus_vampyrus
ENSBTAG00000011524	XRN1	100	60.319	ENSPNYG00000010570	xrn1	99	60.532	Pundamilia_nyererei
ENSBTAG00000011524	XRN1	99	60.184	ENSPNAG00000023531	xrn1	99	60.115	Pygocentrus_nattereri
ENSBTAG00000011524	XRN1	100	86.165	ENSRNOG00000042951	Xrn1	100	86.165	Rattus_norvegicus
ENSBTAG00000011524	XRN1	100	91.857	ENSRBIG00000041227	XRN1	100	91.974	Rhinopithecus_bieti
ENSBTAG00000011524	XRN1	67	54.768	YGL173C	XRN1	73	54.768	Saccharomyces_cerevisiae
ENSBTAG00000011524	XRN1	100	91.857	ENSSBOG00000029561	XRN1	100	91.857	Saimiri_boliviensis_boliviensis
ENSBTAG00000011524	XRN1	99	81.646	ENSSHAG00000016207	XRN1	100	81.528	Sarcophilus_harrisii
ENSBTAG00000011524	XRN1	100	61.292	ENSSFOG00015024211	xrn1	100	61.200	Scleropages_formosus
ENSBTAG00000011524	XRN1	95	71.890	ENSSMAG00000016534	xrn1	99	71.809	Scophthalmus_maximus
ENSBTAG00000011524	XRN1	90	72.172	ENSSDUG00000010306	xrn1	97	72.172	Seriola_dumerili
ENSBTAG00000011524	XRN1	95	71.736	ENSSLDG00000021543	xrn1	100	71.736	Seriola_lalandi_dorsalis
ENSBTAG00000011524	XRN1	68	84.607	ENSSARG00000007741	-	83	84.607	Sorex_araneus
ENSBTAG00000011524	XRN1	100	76.713	ENSTGUG00000008498	XRN1	100	76.365	Taeniopygia_guttata
ENSBTAG00000011524	XRN1	100	58.300	ENSTRUG00000004895	xrn1	96	76.200	Takifugu_rubripes
ENSBTAG00000011524	XRN1	96	68.392	ENSTNIG00000017615	xrn1	93	68.576	Tetraodon_nigroviridis
ENSBTAG00000011524	XRN1	84	97.844	ENSTBEG00000003256	XRN1	84	97.844	Tupaia_belangeri
ENSBTAG00000011524	XRN1	100	91.432	ENSTTRG00000012914	XRN1	100	91.432	Tursiops_truncatus
ENSBTAG00000011524	XRN1	100	92.681	ENSUAMG00000001608	XRN1	99	98.204	Ursus_americanus
ENSBTAG00000011524	XRN1	100	94.555	ENSUMAG00000013625	XRN1	100	94.731	Ursus_maritimus
ENSBTAG00000011524	XRN1	100	92.082	ENSVPAG00000004690	XRN1	100	92.082	Vicugna_pacos
ENSBTAG00000011524	XRN1	100	94.376	ENSVVUG00000024461	XRN1	99	98.204	Vulpes_vulpes
ENSBTAG00000011524	XRN1	100	69.709	ENSXETG00000000619	xrn1	97	88.441	Xenopus_tropicalis
ENSBTAG00000011524	XRN1	100	60.845	ENSXCOG00000007917	xrn1	100	60.922	Xiphophorus_couchianus
ENSBTAG00000011524	XRN1	93	71.801	ENSXMAG00000018320	xrn1	98	71.964	Xiphophorus_maculatus