EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000011656 (Gene tree)
Gene ID: 534228
Gene Symbol: PRPF6
Alias: -
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 39383 bases
Position: chr13:53832190-53871572
Accession: 33382
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000074220	PRP1_N	PF06424.12	2.2e-57	1	1
ENSBTAP00000015480	PRP1_N	PF06424.12	4.7e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download ENSBTAG00000011656's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000011656's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000011656	PRPF6	100	97.343	ENSG00000101161	PRPF6	100	97.343	Homo_sapiens
ENSBTAG00000011656	PRPF6	100	92.667	ENSAPOG00000010395	prpf6	96	93.092	Acanthochromis_polyacanthus
ENSBTAG00000011656	PRPF6	100	98.089	ENSAMEG00000001916	PRPF6	99	98.089	Ailuropoda_melanoleuca
ENSBTAG00000011656	PRPF6	100	92.561	ENSACIG00000019862	prpf6	96	92.986	Amphilophus_citrinellus
ENSBTAG00000011656	PRPF6	100	92.561	ENSAOCG00000012988	prpf6	96	92.986	Amphiprion_ocellaris
ENSBTAG00000011656	PRPF6	100	86.079	ENSAPEG00000008301	prpf6	100	86.504	Amphiprion_percula
ENSBTAG00000011656	PRPF6	100	92.242	ENSATEG00000005581	prpf6	96	92.667	Anabas_testudineus
ENSBTAG00000011656	PRPF6	100	97.662	ENSACAG00000006464	PRPF6	95	97.662	Anolis_carolinensis
ENSBTAG00000011656	PRPF6	100	97.450	ENSANAG00000012661	PRPF6	100	98.115	Aotus_nancymaae
ENSBTAG00000011656	PRPF6	100	92.242	ENSACLG00000025875	prpf6	96	92.667	Astatotilapia_calliptera
ENSBTAG00000011656	PRPF6	99	92.766	ENSAMXG00000001929	prpf6	96	93.191	Astyanax_mexicanus
ENSBTAG00000011656	PRPF6	100	97.450	ENSCJAG00000010616	PRPF6	100	97.450	Callithrix_jacchus
ENSBTAG00000011656	PRPF6	100	99.150	ENSCAFG00000013165	PRPF6	100	99.150	Canis_familiaris
ENSBTAG00000011656	PRPF6	100	99.150	ENSCAFG00020002050	PRPF6	100	99.150	Canis_lupus_dingo
ENSBTAG00000011656	PRPF6	100	100.000	ENSCHIG00000018187	PRPF6	100	100.000	Capra_hircus
ENSBTAG00000011656	PRPF6	100	98.193	ENSTSYG00000007814	PRPF6	100	98.193	Carlito_syrichta
ENSBTAG00000011656	PRPF6	97	97.056	ENSCAPG00000015077	PRPF6	100	97.056	Cavia_aperea
ENSBTAG00000011656	PRPF6	100	98.406	ENSCPOG00000007518	PRPF6	100	98.406	Cavia_porcellus
ENSBTAG00000011656	PRPF6	100	94.155	ENSCCAG00000024564	PRPF6	100	94.261	Cebus_capucinus
ENSBTAG00000011656	PRPF6	100	97.450	ENSCATG00000037473	PRPF6	100	97.450	Cercocebus_atys
ENSBTAG00000011656	PRPF6	100	95.396	ENSCLAG00000003854	PRPF6	100	95.396	Chinchilla_lanigera
ENSBTAG00000011656	PRPF6	100	92.186	ENSCSAG00000016742	PRPF6	100	92.186	Chlorocebus_sabaeus
ENSBTAG00000011656	PRPF6	85	81.301	ENSCHOG00000003315	-	100	81.301	Choloepus_hoffmanni
ENSBTAG00000011656	PRPF6	100	97.875	ENSCPBG00000013964	PRPF6	96	97.875	Chrysemys_picta_bellii
ENSBTAG00000011656	PRPF6	99	73.890	ENSCING00000008817	-	99	73.890	Ciona_intestinalis
ENSBTAG00000011656	PRPF6	100	97.237	ENSCANG00000038230	PRPF6	100	97.237	Colobus_angolensis_palliatus
ENSBTAG00000011656	PRPF6	100	98.300	ENSCGRG00001022666	Prpf6	100	98.300	Cricetulus_griseus_chok1gshd
ENSBTAG00000011656	PRPF6	100	86.823	ENSCSEG00000018561	prpf6	100	87.248	Cynoglossus_semilaevis
ENSBTAG00000011656	PRPF6	100	92.667	ENSCVAG00000010550	prpf6	96	93.092	Cyprinodon_variegatus
ENSBTAG00000011656	PRPF6	100	92.455	ENSDARG00000091367	prpf6	99	92.880	Danio_rerio
ENSBTAG00000011656	PRPF6	100	98.087	ENSDNOG00000040544	PRPF6	100	98.087	Dasypus_novemcinctus
ENSBTAG00000011656	PRPF6	91	97.547	ENSDORG00000005406	Prpf6	100	97.547	Dipodomys_ordii
ENSBTAG00000011656	PRPF6	99	72.121	FBgn0036828	CG6841	98	72.425	Drosophila_melanogaster
ENSBTAG00000011656	PRPF6	85	95.760	ENSETEG00000004447	PRPF6	85	95.760	Echinops_telfairi
ENSBTAG00000011656	PRPF6	99	87.063	ENSEBUG00000008835	prpf6	99	87.063	Eptatretus_burgeri
ENSBTAG00000011656	PRPF6	100	99.044	ENSEASG00005023115	PRPF6	100	99.044	Equus_asinus_asinus
ENSBTAG00000011656	PRPF6	100	94.793	ENSECAG00000013983	PRPF6	100	94.793	Equus_caballus
ENSBTAG00000011656	PRPF6	90	100.000	ENSEEUG00000000180	PRPF6	82	100.000	Erinaceus_europaeus
ENSBTAG00000011656	PRPF6	100	91.180	ENSELUG00000001945	prpf6	93	91.180	Esox_lucius
ENSBTAG00000011656	PRPF6	100	99.362	ENSFCAG00000001183	PRPF6	100	99.362	Felis_catus
ENSBTAG00000011656	PRPF6	100	97.875	ENSFALG00000010326	-	97	97.875	Ficedula_albicollis
ENSBTAG00000011656	PRPF6	100	90.436	ENSFALG00000006046	-	97	90.436	Ficedula_albicollis
ENSBTAG00000011656	PRPF6	100	96.918	ENSFDAG00000006451	PRPF6	100	98.299	Fukomys_damarensis
ENSBTAG00000011656	PRPF6	100	93.199	ENSFHEG00000000560	prpf6	96	93.199	Fundulus_heteroclitus
ENSBTAG00000011656	PRPF6	100	89.218	ENSGMOG00000015622	prpf6	99	89.218	Gadus_morhua
ENSBTAG00000011656	PRPF6	100	97.662	ENSGALG00000006001	PRPF6	100	97.662	Gallus_gallus
ENSBTAG00000011656	PRPF6	100	87.885	ENSGAFG00000021109	prpf6	96	88.310	Gambusia_affinis
ENSBTAG00000011656	PRPF6	100	91.073	ENSGACG00000002576	prpf6	99	91.073	Gasterosteus_aculeatus
ENSBTAG00000011656	PRPF6	100	97.768	ENSGAGG00000008653	PRPF6	96	97.768	Gopherus_agassizii
ENSBTAG00000011656	PRPF6	100	97.343	ENSGGOG00000016876	PRPF6	100	97.343	Gorilla_gorilla
ENSBTAG00000011656	PRPF6	100	92.242	ENSHBUG00000004496	prpf6	96	92.667	Haplochromis_burtoni
ENSBTAG00000011656	PRPF6	100	98.193	ENSHGLG00000009222	PRPF6	100	98.193	Heterocephalus_glaber_female
ENSBTAG00000011656	PRPF6	97	98.146	ENSHGLG00100016600	PRPF6	100	98.146	Heterocephalus_glaber_male
ENSBTAG00000011656	PRPF6	100	91.073	ENSHCOG00000011513	prpf6	96	91.498	Hippocampus_comes
ENSBTAG00000011656	PRPF6	100	93.305	ENSIPUG00000004912	prpf6	96	93.305	Ictalurus_punctatus
ENSBTAG00000011656	PRPF6	100	95.648	ENSSTOG00000002922	PRPF6	100	95.648	Ictidomys_tridecemlineatus
ENSBTAG00000011656	PRPF6	100	98.406	ENSJJAG00000000836	Prpf6	100	98.406	Jaculus_jaculus
ENSBTAG00000011656	PRPF6	100	92.349	ENSKMAG00000017800	prpf6	96	92.774	Kryptolebias_marmoratus
ENSBTAG00000011656	PRPF6	100	91.817	ENSLBEG00000012582	prpf6	96	91.817	Labrus_bergylta
ENSBTAG00000011656	PRPF6	100	94.580	ENSLOCG00000004827	prpf6	96	93.624	Lepisosteus_oculatus
ENSBTAG00000011656	PRPF6	100	97.343	ENSLAFG00000005272	PRPF6	100	97.343	Loxodonta_africana
ENSBTAG00000011656	PRPF6	100	97.237	ENSMFAG00000037542	PRPF6	100	97.237	Macaca_fascicularis
ENSBTAG00000011656	PRPF6	100	90.764	ENSMMUG00000015558	PRPF6	98	99.307	Macaca_mulatta
ENSBTAG00000011656	PRPF6	100	82.945	ENSMNEG00000045555	PRPF6	100	82.945	Macaca_nemestrina
ENSBTAG00000011656	PRPF6	100	92.349	ENSMAMG00000010718	prpf6	96	92.774	Mastacembelus_armatus
ENSBTAG00000011656	PRPF6	92	92.379	ENSMZEG00005026539	prpf6	98	92.379	Maylandia_zebra
ENSBTAG00000011656	PRPF6	100	91.932	ENSMZEG00005015261	-	99	92.357	Maylandia_zebra
ENSBTAG00000011656	PRPF6	97	97.819	ENSMGAG00000006634	PRPF6	100	97.819	Meleagris_gallopavo
ENSBTAG00000011656	PRPF6	100	98.406	ENSMAUG00000013969	Prpf6	100	98.406	Mesocricetus_auratus
ENSBTAG00000011656	PRPF6	87	97.689	ENSMICG00000017793	PRPF6	99	97.689	Microcebus_murinus
ENSBTAG00000011656	PRPF6	100	98.406	ENSMOCG00000001701	Prpf6	100	98.406	Microtus_ochrogaster
ENSBTAG00000011656	PRPF6	100	91.711	ENSMMOG00000020419	prpf6	100	92.136	Mola_mola
ENSBTAG00000011656	PRPF6	99	98.890	ENSMODG00000017051	PRPF6	99	98.890	Monodelphis_domestica
ENSBTAG00000011656	PRPF6	99	92.481	ENSMALG00000000089	prpf6	100	92.481	Monopterus_albus
ENSBTAG00000011656	PRPF6	100	91.711	MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	Mus_caroli
ENSBTAG00000011656	PRPF6	100	98.406	ENSMUSG00000002455	Prpf6	100	98.406	Mus_musculus
ENSBTAG00000011656	PRPF6	100	98.406	MGP_PahariEiJ_G0026262	Prpf6	100	98.406	Mus_pahari
ENSBTAG00000011656	PRPF6	100	98.406	MGP_SPRETEiJ_G0025741	Prpf6	100	98.406	Mus_spretus
ENSBTAG00000011656	PRPF6	92	98.927	ENSMPUG00000008673	PRPF6	99	98.927	Mustela_putorius_furo
ENSBTAG00000011656	PRPF6	100	98.512	ENSNGAG00000003365	Prpf6	100	98.512	Nannospalax_galili
ENSBTAG00000011656	PRPF6	100	92.349	ENSNBRG00000015025	prpf6	96	92.774	Neolamprologus_brichardi
ENSBTAG00000011656	PRPF6	100	97.237	ENSNLEG00000010208	PRPF6	100	97.237	Nomascus_leucogenys
ENSBTAG00000011656	PRPF6	100	88.153	ENSMEUG00000009824	-	90	88.340	Notamacropus_eugenii
ENSBTAG00000011656	PRPF6	100	92.561	ENSODEG00000004841	PRPF6	100	92.561	Octodon_degus
ENSBTAG00000011656	PRPF6	100	92.242	ENSONIG00000017406	prpf6	96	92.667	Oreochromis_niloticus
ENSBTAG00000011656	PRPF6	100	98.193	ENSOANG00000004920	PRPF6	100	98.193	Ornithorhynchus_anatinus
ENSBTAG00000011656	PRPF6	99	96.674	ENSOCUG00000014151	PRPF6	100	96.674	Oryctolagus_cuniculus
ENSBTAG00000011656	PRPF6	100	92.030	ENSORLG00000009592	prpf6	96	92.030	Oryzias_latipes
ENSBTAG00000011656	PRPF6	100	92.136	ENSORLG00020001458	prpf6	96	92.136	Oryzias_latipes_hni
ENSBTAG00000011656	PRPF6	100	92.136	ENSORLG00015018762	prpf6	96	92.136	Oryzias_latipes_hsok
ENSBTAG00000011656	PRPF6	100	91.817	ENSOMEG00000012174	prpf6	96	92.242	Oryzias_melastigma
ENSBTAG00000011656	PRPF6	100	90.340	ENSOGAG00000007573	PRPF6	100	90.340	Otolemur_garnettii
ENSBTAG00000011656	PRPF6	100	99.575	ENSOARG00000008776	PRPF6	99	99.575	Ovis_aries
ENSBTAG00000011656	PRPF6	100	97.343	ENSPPAG00000008686	PRPF6	100	97.343	Pan_paniscus
ENSBTAG00000011656	PRPF6	100	99.469	ENSPPRG00000008497	PRPF6	100	99.469	Panthera_pardus
ENSBTAG00000011656	PRPF6	97	99.455	ENSPTIG00000011184	PRPF6	97	99.455	Panthera_tigris_altaica
ENSBTAG00000011656	PRPF6	100	97.343	ENSPTRG00000013765	PRPF6	100	97.343	Pan_troglodytes
ENSBTAG00000011656	PRPF6	100	96.918	ENSPANG00000024135	PRPF6	100	96.918	Papio_anubis
ENSBTAG00000011656	PRPF6	100	93.730	ENSPKIG00000005627	prpf6	99	94.155	Paramormyrops_kingsleyae
ENSBTAG00000011656	PRPF6	94	97.959	ENSPSIG00000007717	PRPF6	100	97.959	Pelodiscus_sinensis
ENSBTAG00000011656	PRPF6	100	90.021	ENSPMGG00000008925	prpf6	96	90.234	Periophthalmus_magnuspinnatus
ENSBTAG00000011656	PRPF6	100	98.300	ENSPEMG00000016036	Prpf6	100	98.300	Peromyscus_maniculatus_bairdii
ENSBTAG00000011656	PRPF6	99	88.417	ENSPMAG00000006144	prpf6	99	88.417	Petromyzon_marinus
ENSBTAG00000011656	PRPF6	100	98.300	ENSPCIG00000017909	PRPF6	100	98.300	Phascolarctos_cinereus
ENSBTAG00000011656	PRPF6	100	92.774	ENSPFOG00000006431	prpf6	96	93.199	Poecilia_formosa
ENSBTAG00000011656	PRPF6	100	92.667	ENSPLAG00000005974	prpf6	96	93.092	Poecilia_latipinna
ENSBTAG00000011656	PRPF6	100	92.880	ENSPMEG00000009977	prpf6	96	93.305	Poecilia_mexicana
ENSBTAG00000011656	PRPF6	100	92.774	ENSPREG00000017993	prpf6	92	93.199	Poecilia_reticulata
ENSBTAG00000011656	PRPF6	100	96.812	ENSPPYG00000011256	PRPF6	100	96.812	Pongo_abelii
ENSBTAG00000011656	PRPF6	95	99.673	ENSPCAG00000006536	PRPF6	88	99.673	Procavia_capensis
ENSBTAG00000011656	PRPF6	100	97.662	ENSPCOG00000016881	PRPF6	100	97.662	Propithecus_coquereli
ENSBTAG00000011656	PRPF6	100	92.667	ENSPVAG00000014316	PRPF6	100	92.667	Pteropus_vampyrus
ENSBTAG00000011656	PRPF6	100	75.902	ENSPNYG00000001939	prpf6	96	81.190	Pundamilia_nyererei
ENSBTAG00000011656	PRPF6	100	92.986	ENSPNAG00000015606	prpf6	96	93.411	Pygocentrus_nattereri
ENSBTAG00000011656	PRPF6	100	98.300	ENSRNOG00000051498	Prpf6	100	98.300	Rattus_norvegicus
ENSBTAG00000011656	PRPF6	100	97.237	ENSRBIG00000043613	PRPF6	100	97.237	Rhinopithecus_bieti
ENSBTAG00000011656	PRPF6	100	94.074	ENSRROG00000040969	PRPF6	98	97.924	Rhinopithecus_roxellana
ENSBTAG00000011656	PRPF6	91	93.426	ENSSBOG00000020632	PRPF6	93	93.426	Saimiri_boliviensis_boliviensis
ENSBTAG00000011656	PRPF6	100	98.300	ENSSHAG00000016810	PRPF6	100	98.300	Sarcophilus_harrisii
ENSBTAG00000011656	PRPF6	99	94.307	ENSSFOG00015020859	prpf6	100	94.737	Scleropages_formosus
ENSBTAG00000011656	PRPF6	100	91.605	ENSSMAG00000008112	prpf6	96	91.605	Scophthalmus_maximus
ENSBTAG00000011656	PRPF6	100	92.242	ENSSDUG00000016142	prpf6	96	92.667	Seriola_dumerili
ENSBTAG00000011656	PRPF6	100	92.242	ENSSLDG00000025283	prpf6	100	89.267	Seriola_lalandi_dorsalis
ENSBTAG00000011656	PRPF6	94	96.259	ENSSPUG00000018260	PRPF6	100	96.259	Sphenodon_punctatus
ENSBTAG00000011656	PRPF6	100	92.242	ENSSPAG00000015850	prpf6	96	92.667	Stegastes_partitus
ENSBTAG00000011656	PRPF6	100	99.256	ENSSSCG00000029119	PRPF6	100	99.206	Sus_scrofa
ENSBTAG00000011656	PRPF6	100	97.981	ENSTGUG00000007221	PRPF6	99	97.981	Taeniopygia_guttata
ENSBTAG00000011656	PRPF6	100	91.711	ENSTRUG00000002920	prpf6	96	92.136	Takifugu_rubripes
ENSBTAG00000011656	PRPF6	100	85.412	ENSTNIG00000017873	prpf6	100	85.835	Tetraodon_nigroviridis
ENSBTAG00000011656	PRPF6	89	98.343	ENSTBEG00000005348	PRPF6	85	98.343	Tupaia_belangeri
ENSBTAG00000011656	PRPF6	100	98.937	ENSTTRG00000013068	PRPF6	100	98.937	Tursiops_truncatus
ENSBTAG00000011656	PRPF6	98	97.500	ENSUMAG00000021631	PRPF6	98	97.500	Ursus_maritimus
ENSBTAG00000011656	PRPF6	100	99.150	ENSVVUG00000014948	PRPF6	100	99.150	Vulpes_vulpes
ENSBTAG00000011656	PRPF6	100	95.218	ENSXETG00000012054	prpf6	97	95.643	Xenopus_tropicalis
ENSBTAG00000011656	PRPF6	100	92.880	ENSXCOG00000008082	prpf6	96	93.305	Xiphophorus_couchianus
ENSBTAG00000011656	PRPF6	100	92.880	ENSXMAG00000015581	prpf6	96	93.305	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0016607	nuclear speck	-	ISS	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component