EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000012135 (Gene tree)
Gene ID: 515517
Gene Symbol: LARP1B
Alias: -
Full Name: La ribonucleoprotein domain family member 1B
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 138358 bases
Position: chr17:29525417-29663774
Accession: 30791
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000064747	La	PF05383.17	1.2e-21	1	1
ENSBTAP00000071642	La	PF05383.17	2.3e-21	1	1
ENSBTAP00000016102	La	PF05383.17	2.6e-21	1	1
ENSBTAP00000073235	La	PF05383.17	2.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000016102	-	4768	-	ENSBTAP00000016102	1114 (aa)	XP_010812067	F1N0C8
ENSBTAT00000074990	-	2913	-	ENSBTAP00000064747	525 (aa)	-	UPI0007605D5F
ENSBTAT00000082319	-	4471	-	ENSBTAP00000073235	1015 (aa)	XP_024833349	UPI000D535463
ENSBTAT00000081773	-	3625	-	ENSBTAP00000071642	743 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000012135's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000012135's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000012135	LARP1B	97	53.148	ENSBTAG00000008443	LARP1	89	57.271

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000012135	LARP1B	98	89.442	ENSG00000138709	LARP1B	100	92.000	Homo_sapiens
ENSBTAG00000012135	LARP1B	95	52.030	ENSAPOG00000020101	larp1b	87	57.551	Acanthochromis_polyacanthus
ENSBTAG00000012135	LARP1B	98	90.838	ENSAMEG00000002748	LARP1B	99	91.470	Ailuropoda_melanoleuca
ENSBTAG00000012135	LARP1B	99	47.359	ENSACIG00000023890	larp1b	86	54.717	Amphilophus_citrinellus
ENSBTAG00000012135	LARP1B	95	49.904	ENSAOCG00000014268	larp1b	85	57.837	Amphiprion_ocellaris
ENSBTAG00000012135	LARP1B	95	53.148	ENSAPEG00000004126	larp1b	87	58.035	Amphiprion_percula
ENSBTAG00000012135	LARP1B	99	49.546	ENSATEG00000017849	larp1b	87	56.413	Anabas_testudineus
ENSBTAG00000012135	LARP1B	97	64.353	ENSAPLG00000010129	LARP1B	100	68.811	Anas_platyrhynchos
ENSBTAG00000012135	LARP1B	98	73.694	ENSACAG00000011338	LARP1B	93	75.275	Anolis_carolinensis
ENSBTAG00000012135	LARP1B	98	79.377	ENSANAG00000034618	LARP1B	90	84.536	Aotus_nancymaae
ENSBTAG00000012135	LARP1B	95	51.119	ENSACLG00000011948	larp1b	87	55.979	Astatotilapia_calliptera
ENSBTAG00000012135	LARP1B	89	50.292	ENSAMXG00000006805	larp1b	87	51.789	Astyanax_mexicanus
ENSBTAG00000012135	LARP1B	99	87.692	ENSCJAG00000003338	LARP1B	98	91.515	Callithrix_jacchus
ENSBTAG00000012135	LARP1B	98	91.813	ENSCAFG00000003831	LARP1B	100	92.500	Canis_familiaris
ENSBTAG00000012135	LARP1B	98	91.813	ENSCAFG00020018899	LARP1B	98	93.636	Canis_lupus_dingo
ENSBTAG00000012135	LARP1B	100	96.584	ENSCHIG00000023144	LARP1B	100	96.584	Capra_hircus
ENSBTAG00000012135	LARP1B	63	84.848	ENSTSYG00000002037	-	96	82.456	Carlito_syrichta
ENSBTAG00000012135	LARP1B	99	88.269	ENSCCAG00000021948	LARP1B	98	92.121	Cebus_capucinus
ENSBTAG00000012135	LARP1B	99	85.962	ENSCATG00000013541	LARP1B	100	88.197	Cercocebus_atys
ENSBTAG00000012135	LARP1B	63	86.364	ENSCLAG00000006448	-	98	86.364	Chinchilla_lanigera
ENSBTAG00000012135	LARP1B	98	88.155	ENSCSAG00000003582	LARP1B	100	89.216	Chlorocebus_sabaeus
ENSBTAG00000012135	LARP1B	98	80.312	ENSCHOG00000005354	LARP1B	100	81.679	Choloepus_hoffmanni
ENSBTAG00000012135	LARP1B	98	74.081	ENSCPBG00000017480	LARP1B	93	75.510	Chrysemys_picta_bellii
ENSBTAG00000012135	LARP1B	99	79.615	ENSCANG00000026958	LARP1B	100	84.148	Colobus_angolensis_palliatus
ENSBTAG00000012135	LARP1B	63	88.485	ENSCGRG00001004660	-	98	88.485	Cricetulus_griseus_chok1gshd
ENSBTAG00000012135	LARP1B	63	88.182	ENSCGRG00000001914	-	98	88.182	Cricetulus_griseus_crigri
ENSBTAG00000012135	LARP1B	95	45.208	ENSCSEG00000013519	larp1b	88	54.582	Cynoglossus_semilaevis
ENSBTAG00000012135	LARP1B	95	51.750	ENSCVAG00000005046	larp1b	87	56.237	Cyprinodon_variegatus
ENSBTAG00000012135	LARP1B	95	48.113	ENSDARG00000061169	larp1b	83	54.898	Danio_rerio
ENSBTAG00000012135	LARP1B	98	87.938	ENSDNOG00000018765	-	100	87.891	Dasypus_novemcinctus
ENSBTAG00000012135	LARP1B	78	87.197	ENSETEG00000012497	LARP1B	89	83.333	Echinops_telfairi
ENSBTAG00000012135	LARP1B	98	42.561	ENSEBUG00000003668	larp1b	90	51.757	Eptatretus_burgeri
ENSBTAG00000012135	LARP1B	98	91.228	ENSEASG00005018106	LARP1B	98	93.939	Equus_asinus_asinus
ENSBTAG00000012135	LARP1B	99	90.909	ENSECAG00000001088	LARP1B	100	89.148	Equus_caballus
ENSBTAG00000012135	LARP1B	77	48.255	ENSELUG00000023774	larp1b	86	45.310	Esox_lucius
ENSBTAG00000012135	LARP1B	99	90.211	ENSFCAG00000014650	-	98	92.424	Felis_catus
ENSBTAG00000012135	LARP1B	96	68.566	ENSFALG00000008098	LARP1B	100	68.196	Ficedula_albicollis
ENSBTAG00000012135	LARP1B	95	50.181	ENSFHEG00000010264	larp1b	84	55.332	Fundulus_heteroclitus
ENSBTAG00000012135	LARP1B	81	58.654	ENSGMOG00000005207	larp1b	81	55.007	Gadus_morhua
ENSBTAG00000012135	LARP1B	97	68.738	ENSGALG00000010207	LARP1B	92	68.443	Gallus_gallus
ENSBTAG00000012135	LARP1B	79	61.138	ENSGAFG00000012012	larp1b	98	58.830	Gambusia_affinis
ENSBTAG00000012135	LARP1B	98	48.000	ENSGACG00000004609	larp1b	85	56.536	Gasterosteus_aculeatus
ENSBTAG00000012135	LARP1B	98	75.097	ENSGAGG00000017209	LARP1B	92	75.560	Gopherus_agassizii
ENSBTAG00000012135	LARP1B	99	87.692	ENSGGOG00000015900	LARP1B	100	89.083	Gorilla_gorilla
ENSBTAG00000012135	LARP1B	95	51.311	ENSHBUG00000009730	larp1b	86	56.095	Haplochromis_burtoni
ENSBTAG00000012135	LARP1B	63	72.508	ENSHGLG00000013922	-	97	72.508	Heterocephalus_glaber_female
ENSBTAG00000012135	LARP1B	63	84.132	ENSHGLG00000006728	-	98	84.431	Heterocephalus_glaber_female
ENSBTAG00000012135	LARP1B	63	84.848	ENSHGLG00100014041	-	98	82.558	Heterocephalus_glaber_male
ENSBTAG00000012135	LARP1B	63	72.508	ENSHGLG00100016491	-	97	72.508	Heterocephalus_glaber_male
ENSBTAG00000012135	LARP1B	67	61.472	ENSHCOG00000000918	larp1b	96	62.193	Hippocampus_comes
ENSBTAG00000012135	LARP1B	86	53.649	ENSIPUG00000012138	larp1b	83	55.337	Ictalurus_punctatus
ENSBTAG00000012135	LARP1B	63	88.822	ENSSTOG00000008596	-	98	88.822	Ictidomys_tridecemlineatus
ENSBTAG00000012135	LARP1B	60	74.441	ENSSTOG00000034510	-	84	74.441	Ictidomys_tridecemlineatus
ENSBTAG00000012135	LARP1B	63	80.909	ENSSTOG00000021917	-	94	80.909	Ictidomys_tridecemlineatus
ENSBTAG00000012135	LARP1B	51	68.635	ENSSTOG00000033183	-	84	83.249	Ictidomys_tridecemlineatus
ENSBTAG00000012135	LARP1B	63	85.714	ENSJJAG00000022360	Larp1b	98	85.714	Jaculus_jaculus
ENSBTAG00000012135	LARP1B	95	48.231	ENSKMAG00000011589	larp1b	89	55.315	Kryptolebias_marmoratus
ENSBTAG00000012135	LARP1B	95	50.558	ENSLBEG00000005655	larp1b	85	57.656	Labrus_bergylta
ENSBTAG00000012135	LARP1B	98	69.186	ENSLACG00000015247	LARP1B	100	68.274	Latimeria_chalumnae
ENSBTAG00000012135	LARP1B	98	55.877	ENSLOCG00000010684	larp1b	94	67.086	Lepisosteus_oculatus
ENSBTAG00000012135	LARP1B	63	92.424	ENSLAFG00000008473	-	98	92.424	Loxodonta_africana
ENSBTAG00000012135	LARP1B	99	88.269	ENSMFAG00000002218	LARP1B	100	89.727	Macaca_fascicularis
ENSBTAG00000012135	LARP1B	99	88.269	ENSMMUG00000021347	LARP1B	100	89.727	Macaca_mulatta
ENSBTAG00000012135	LARP1B	83	87.603	ENSMNEG00000030406	LARP1B	100	87.603	Macaca_nemestrina
ENSBTAG00000012135	LARP1B	98	80.897	ENSMLEG00000009306	LARP1B	100	85.683	Mandrillus_leucophaeus
ENSBTAG00000012135	LARP1B	99	49.117	ENSMAMG00000000081	larp1b	87	56.816	Mastacembelus_armatus
ENSBTAG00000012135	LARP1B	82	53.982	ENSMZEG00005002545	larp1b	98	60.076	Maylandia_zebra
ENSBTAG00000012135	LARP1B	98	55.335	ENSMGAG00000004809	LARP1B	99	63.676	Meleagris_gallopavo
ENSBTAG00000012135	LARP1B	63	87.576	ENSMAUG00000007879	-	98	87.576	Mesocricetus_auratus
ENSBTAG00000012135	LARP1B	97	70.000	ENSMICG00000028052	-	99	70.020	Microcebus_murinus
ENSBTAG00000012135	LARP1B	63	76.807	ENSMICG00000037883	-	90	76.807	Microcebus_murinus
ENSBTAG00000012135	LARP1B	99	90.577	ENSMICG00000036111	LARP1B	100	92.928	Microcebus_murinus
ENSBTAG00000012135	LARP1B	51	87.132	ENSMOCG00000001490	Larp1b	93	91.051	Microtus_ochrogaster
ENSBTAG00000012135	LARP1B	98	84.466	ENSMODG00000012300	LARP1B	97	78.320	Monodelphis_domestica
ENSBTAG00000012135	LARP1B	99	49.023	ENSMALG00000003638	larp1b	87	56.553	Monopterus_albus
ENSBTAG00000012135	LARP1B	67	85.227	MGP_CAROLIEiJ_G0024962	Larp1b	98	87.576	Mus_caroli
ENSBTAG00000012135	LARP1B	64	87.278	ENSMUSG00000025762	Larp1b	98	88.182	Mus_musculus
ENSBTAG00000012135	LARP1B	63	87.576	MGP_PahariEiJ_G0026403	Larp1b	98	87.576	Mus_pahari
ENSBTAG00000012135	LARP1B	64	87.278	MGP_SPRETEiJ_G0025897	Larp1b	98	88.182	Mus_spretus
ENSBTAG00000012135	LARP1B	100	92.562	ENSMPUG00000017365	LARP1B	90	92.562	Mustela_putorius_furo
ENSBTAG00000012135	LARP1B	98	79.336	ENSMLUG00000010229	LARP1B	100	84.881	Myotis_lucifugus
ENSBTAG00000012135	LARP1B	82	52.920	ENSNBRG00000023846	larp1b	79	56.466	Neolamprologus_brichardi
ENSBTAG00000012135	LARP1B	99	87.885	ENSNLEG00000013819	LARP1B	98	91.212	Nomascus_leucogenys
ENSBTAG00000012135	LARP1B	71	87.234	ENSMEUG00000010308	LARP1B	82	87.234	Notamacropus_eugenii
ENSBTAG00000012135	LARP1B	98	67.184	ENSOPRG00000005478	LARP1B	92	75.740	Ochotona_princeps
ENSBTAG00000012135	LARP1B	63	85.758	ENSODEG00000001292	-	98	85.758	Octodon_degus
ENSBTAG00000012135	LARP1B	95	50.741	ENSONIG00000012386	larp1b	99	55.934	Oreochromis_niloticus
ENSBTAG00000012135	LARP1B	98	89.084	ENSOCUG00000013330	LARP1B	100	88.587	Oryctolagus_cuniculus
ENSBTAG00000012135	LARP1B	95	51.595	ENSORLG00000017954	larp1b	89	54.636	Oryzias_latipes
ENSBTAG00000012135	LARP1B	95	51.595	ENSORLG00020013081	larp1b	89	54.536	Oryzias_latipes_hni
ENSBTAG00000012135	LARP1B	95	52.434	ENSORLG00015009580	larp1b	89	54.781	Oryzias_latipes_hsok
ENSBTAG00000012135	LARP1B	95	50.000	ENSOMEG00000004210	larp1b	86	55.464	Oryzias_melastigma
ENSBTAG00000012135	LARP1B	98	87.329	ENSOGAG00000005771	LARP1B	100	89.027	Otolemur_garnettii
ENSBTAG00000012135	LARP1B	98	97.076	ENSOARG00000015300	LARP1B	100	95.847	Ovis_aries
ENSBTAG00000012135	LARP1B	99	87.500	ENSPPAG00000030439	LARP1B	100	89.192	Pan_paniscus
ENSBTAG00000012135	LARP1B	99	90.595	ENSPPRG00000002743	-	100	90.595	Panthera_pardus
ENSBTAG00000012135	LARP1B	99	90.595	ENSPTIG00000011225	LARP1B	100	90.595	Panthera_tigris_altaica
ENSBTAG00000012135	LARP1B	99	87.308	ENSPTRG00000016437	LARP1B	100	88.974	Pan_troglodytes
ENSBTAG00000012135	LARP1B	99	88.077	ENSPANG00000012488	LARP1B	100	89.617	Papio_anubis
ENSBTAG00000012135	LARP1B	92	45.635	ENSPKIG00000014360	larp1b	96	50.682	Paramormyrops_kingsleyae
ENSBTAG00000012135	LARP1B	98	75.097	ENSPSIG00000012885	LARP1B	99	77.131	Pelodiscus_sinensis
ENSBTAG00000012135	LARP1B	70	61.699	ENSPMGG00000007207	larp1b	91	59.949	Periophthalmus_magnuspinnatus
ENSBTAG00000012135	LARP1B	98	43.038	ENSPMAG00000002700	larp1b	99	52.972	Petromyzon_marinus
ENSBTAG00000012135	LARP1B	98	83.689	ENSPCIG00000026516	LARP1B	100	86.225	Phascolarctos_cinereus
ENSBTAG00000012135	LARP1B	95	50.980	ENSPFOG00000019519	larp1b	87	56.526	Poecilia_formosa
ENSBTAG00000012135	LARP1B	95	53.084	ENSPFOG00000022837	-	85	49.585	Poecilia_formosa
ENSBTAG00000012135	LARP1B	95	52.710	ENSPLAG00000007115	larp1b	87	57.732	Poecilia_latipinna
ENSBTAG00000012135	LARP1B	95	52.345	ENSPMEG00000001224	larp1b	86	57.492	Poecilia_mexicana
ENSBTAG00000012135	LARP1B	51	54.225	ENSPREG00000005955	-	89	54.930	Poecilia_reticulata
ENSBTAG00000012135	LARP1B	98	84.990	ENSPCAG00000007546	LARP1B	100	84.951	Procavia_capensis
ENSBTAG00000012135	LARP1B	99	90.000	ENSPCOG00000021874	LARP1B	99	95.205	Propithecus_coquereli
ENSBTAG00000012135	LARP1B	98	85.770	ENSPVAG00000005373	LARP1B	100	85.635	Pteropus_vampyrus
ENSBTAG00000012135	LARP1B	68	63.324	ENSPNYG00000017357	larp1b	98	59.798	Pundamilia_nyererei
ENSBTAG00000012135	LARP1B	95	50.000	ENSPNAG00000008823	larp1b	83	57.519	Pygocentrus_nattereri
ENSBTAG00000012135	LARP1B	63	89.394	ENSRNOG00000038366	Larp1b	98	89.394	Rattus_norvegicus
ENSBTAG00000012135	LARP1B	99	86.538	ENSRBIG00000039982	-	98	89.091	Rhinopithecus_bieti
ENSBTAG00000012135	LARP1B	63	82.424	ENSRBIG00000038568	-	90	82.424	Rhinopithecus_bieti
ENSBTAG00000012135	LARP1B	63	73.939	ENSRROG00000038525	-	94	73.939	Rhinopithecus_roxellana
ENSBTAG00000012135	LARP1B	99	88.269	ENSRROG00000030771	LARP1B	100	89.617	Rhinopithecus_roxellana
ENSBTAG00000012135	LARP1B	98	85.243	ENSSHAG00000014474	LARP1B	99	84.731	Sarcophilus_harrisii
ENSBTAG00000012135	LARP1B	95	50.093	ENSSMAG00000006347	larp1b	95	55.739	Scophthalmus_maximus
ENSBTAG00000012135	LARP1B	95	50.936	ENSSDUG00000004182	larp1b	84	58.191	Seriola_dumerili
ENSBTAG00000012135	LARP1B	75	61.777	ENSSLDG00000014613	larp1b	82	60.724	Seriola_lalandi_dorsalis
ENSBTAG00000012135	LARP1B	98	73.694	ENSSPUG00000011837	LARP1B	99	69.283	Sphenodon_punctatus
ENSBTAG00000012135	LARP1B	99	48.818	ENSSPAG00000017772	larp1b	88	57.157	Stegastes_partitus
ENSBTAG00000012135	LARP1B	100	90.161	ENSSSCG00000034280	LARP1B	99	93.814	Sus_scrofa
ENSBTAG00000012135	LARP1B	82	72.944	ENSTGUG00000002098	-	99	65.993	Taeniopygia_guttata
ENSBTAG00000012135	LARP1B	96	51.141	ENSTRUG00000005612	larp1b	85	56.484	Takifugu_rubripes
ENSBTAG00000012135	LARP1B	96	46.737	ENSTNIG00000012398	larp1b	99	53.931	Tetraodon_nigroviridis
ENSBTAG00000012135	LARP1B	75	87.736	ENSTBEG00000004177	LARP1B	88	87.736	Tupaia_belangeri
ENSBTAG00000012135	LARP1B	98	81.518	ENSTTRG00000012984	LARP1B	100	82.642	Tursiops_truncatus
ENSBTAG00000012135	LARP1B	63	81.818	ENSUAMG00000016938	-	98	80.967	Ursus_americanus
ENSBTAG00000012135	LARP1B	98	90.643	ENSUMAG00000007373	LARP1B	100	91.630	Ursus_maritimus
ENSBTAG00000012135	LARP1B	98	80.507	ENSVPAG00000007223	LARP1B	100	79.428	Vicugna_pacos
ENSBTAG00000012135	LARP1B	98	91.618	ENSVVUG00000011307	LARP1B	100	92.391	Vulpes_vulpes
ENSBTAG00000012135	LARP1B	97	54.633	ENSXETG00000022512	larp1b	94	57.895	Xenopus_tropicalis
ENSBTAG00000012135	LARP1B	64	61.782	ENSXCOG00000004435	larp1b	73	59.605	Xiphophorus_couchianus
ENSBTAG00000012135	LARP1B	95	51.852	ENSXMAG00000008150	larp1b	86	55.816	Xiphophorus_maculatus