EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000012596 (Gene tree)
Gene ID: 511306
Gene Symbol: POP1
Alias: -
Full Name: Bos taurus POP1 homolog%2C ribonuclease P/MRP subunit (POP1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 28844 bases
Position: chr14:66086238-66115081
Accession: NM_001193215
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000016721	POP1	PF06978.11	2.7e-38	1	2
ENSBTAP00000016721	POP1	PF06978.11	2.7e-38	2	2
ENSBTAP00000016721	POPLD	PF08170.12	2.8e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000016721	-	3208	XM_005215620	ENSBTAP00000016721	1015 (aa)	XP_005215677	E1BF14

Gene Model

Click here to download ENSBTAG00000012596's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03008	Ribosome biogenesis in eukaryotes	KEGG
bta03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000012596's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000012596	POP1	100	80.762	ENSG00000104356	POP1	100	87.978	Homo_sapiens
ENSBTAG00000012596	POP1	100	48.329	ENSAPOG00000008198	pop1	100	48.152	Acanthochromis_polyacanthus
ENSBTAG00000012596	POP1	100	79.863	ENSAMEG00000000556	POP1	100	79.863	Ailuropoda_melanoleuca
ENSBTAG00000012596	POP1	100	47.495	ENSACIG00000004169	POP1	100	47.348	Amphilophus_citrinellus
ENSBTAG00000012596	POP1	100	48.236	ENSAOCG00000010991	pop1	100	48.618	Amphiprion_ocellaris
ENSBTAG00000012596	POP1	94	46.566	ENSAPEG00000007607	pop1	99	47.475	Amphiprion_percula
ENSBTAG00000012596	POP1	100	47.538	ENSATEG00000024814	POP1	100	47.727	Anabas_testudineus
ENSBTAG00000012596	POP1	92	60.934	ENSAPLG00000014418	POP1	100	60.568	Anas_platyrhynchos
ENSBTAG00000012596	POP1	99	55.382	ENSACAG00000016083	POP1	100	54.928	Anolis_carolinensis
ENSBTAG00000012596	POP1	88	86.607	ENSANAG00000026360	POP1	99	86.607	Aotus_nancymaae
ENSBTAG00000012596	POP1	100	47.760	ENSACLG00000010951	pop1	100	48.436	Astatotilapia_calliptera
ENSBTAG00000012596	POP1	100	46.419	ENSAMXG00000014483	POP1	100	44.651	Astyanax_mexicanus
ENSBTAG00000012596	POP1	100	79.277	ENSCJAG00000015567	POP1	100	79.374	Callithrix_jacchus
ENSBTAG00000012596	POP1	100	79.548	ENSCAFG00000000469	POP1	100	78.663	Canis_familiaris
ENSBTAG00000012596	POP1	100	80.236	ENSCAFG00020026765	POP1	100	80.236	Canis_lupus_dingo
ENSBTAG00000012596	POP1	100	96.063	ENSCHIG00000017066	POP1	100	96.063	Capra_hircus
ENSBTAG00000012596	POP1	100	78.711	ENSTSYG00000003097	POP1	100	78.711	Carlito_syrichta
ENSBTAG00000012596	POP1	100	73.761	ENSCAPG00000007251	POP1	100	73.761	Cavia_aperea
ENSBTAG00000012596	POP1	100	76.465	ENSCPOG00000002901	POP1	100	76.465	Cavia_porcellus
ENSBTAG00000012596	POP1	100	79.179	ENSCCAG00000018939	POP1	94	87.018	Cebus_capucinus
ENSBTAG00000012596	POP1	100	80.859	ENSCATG00000040916	POP1	100	80.859	Cercocebus_atys
ENSBTAG00000012596	POP1	100	77.344	ENSCLAG00000007208	POP1	97	77.344	Chinchilla_lanigera
ENSBTAG00000012596	POP1	90	80.694	ENSCSAG00000012340	POP1	99	80.694	Chlorocebus_sabaeus
ENSBTAG00000012596	POP1	95	74.615	ENSCHOG00000011432	POP1	99	74.615	Choloepus_hoffmanni
ENSBTAG00000012596	POP1	100	64.447	ENSCPBG00000006373	POP1	100	64.447	Chrysemys_picta_bellii
ENSBTAG00000012596	POP1	82	39.689	ENSCING00000008323	-	77	37.456	Ciona_intestinalis
ENSBTAG00000012596	POP1	100	80.859	ENSCANG00000001647	POP1	100	80.859	Colobus_angolensis_palliatus
ENSBTAG00000012596	POP1	100	73.242	ENSCGRG00001017308	Pop1	100	73.145	Cricetulus_griseus_chok1gshd
ENSBTAG00000012596	POP1	100	68.066	ENSCGRG00000010824	Pop1	100	67.969	Cricetulus_griseus_crigri
ENSBTAG00000012596	POP1	100	45.747	ENSCSEG00000008737	POP1	100	46.125	Cynoglossus_semilaevis
ENSBTAG00000012596	POP1	100	48.031	ENSCVAG00000022248	pop1	100	48.092	Cyprinodon_variegatus
ENSBTAG00000012596	POP1	100	73.979	ENSDNOG00000019974	POP1	100	73.979	Dasypus_novemcinctus
ENSBTAG00000012596	POP1	100	69.110	ENSDORG00000015384	Pop1	100	68.616	Dipodomys_ordii
ENSBTAG00000012596	POP1	61	34.340	FBgn0026702	l(1)G0045	69	34.231	Drosophila_melanogaster
ENSBTAG00000012596	POP1	89	69.825	ENSETEG00000007839	POP1	88	69.825	Echinops_telfairi
ENSBTAG00000012596	POP1	100	82.006	ENSEASG00005003189	POP1	98	82.006	Equus_asinus_asinus
ENSBTAG00000012596	POP1	100	81.711	ENSECAG00000024236	POP1	100	81.711	Equus_caballus
ENSBTAG00000012596	POP1	67	83.333	ENSEEUG00000003050	-	70	83.333	Erinaceus_europaeus
ENSBTAG00000012596	POP1	100	48.230	ENSELUG00000003526	pop1	100	49.038	Esox_lucius
ENSBTAG00000012596	POP1	100	81.514	ENSFCAG00000002168	POP1	100	81.514	Felis_catus
ENSBTAG00000012596	POP1	100	57.659	ENSFALG00000005711	POP1	100	57.854	Ficedula_albicollis
ENSBTAG00000012596	POP1	100	77.148	ENSFDAG00000017068	POP1	100	77.148	Fukomys_damarensis
ENSBTAG00000012596	POP1	93	51.507	ENSFHEG00000019518	pop1	100	47.368	Fundulus_heteroclitus
ENSBTAG00000012596	POP1	92	46.687	ENSGMOG00000000659	POP1	91	52.615	Gadus_morhua
ENSBTAG00000012596	POP1	100	48.549	ENSGAFG00000019770	POP1	100	48.839	Gambusia_affinis
ENSBTAG00000012596	POP1	100	46.935	ENSGACG00000003499	pop1	100	46.743	Gasterosteus_aculeatus
ENSBTAG00000012596	POP1	100	63.707	ENSGAGG00000011737	POP1	98	63.707	Gopherus_agassizii
ENSBTAG00000012596	POP1	100	80.566	ENSGGOG00000003176	POP1	100	80.566	Gorilla_gorilla
ENSBTAG00000012596	POP1	100	48.482	ENSHBUG00000021583	pop1	100	48.531	Haplochromis_burtoni
ENSBTAG00000012596	POP1	100	77.246	ENSHGLG00000006029	POP1	100	77.246	Heterocephalus_glaber_female
ENSBTAG00000012596	POP1	100	77.246	ENSHGLG00100016879	POP1	100	77.246	Heterocephalus_glaber_male
ENSBTAG00000012596	POP1	90	50.267	ENSHCOG00000013888	pop1	87	56.160	Hippocampus_comes
ENSBTAG00000012596	POP1	100	46.448	ENSIPUG00000018336	pop1	91	63.415	Ictalurus_punctatus
ENSBTAG00000012596	POP1	100	78.027	ENSSTOG00000011455	POP1	97	78.027	Ictidomys_tridecemlineatus
ENSBTAG00000012596	POP1	100	72.933	ENSJJAG00000013325	Pop1	100	72.468	Jaculus_jaculus
ENSBTAG00000012596	POP1	100	47.843	ENSKMAG00000001346	POP1	100	47.747	Kryptolebias_marmoratus
ENSBTAG00000012596	POP1	81	54.844	ENSLBEG00000024457	POP1	89	54.386	Labrus_bergylta
ENSBTAG00000012596	POP1	93	55.903	ENSLACG00000012498	POP1	100	55.791	Latimeria_chalumnae
ENSBTAG00000012596	POP1	100	51.205	ENSLOCG00000009817	POP1	100	51.022	Lepisosteus_oculatus
ENSBTAG00000012596	POP1	100	79.357	ENSLAFG00000010770	POP1	100	79.357	Loxodonta_africana
ENSBTAG00000012596	POP1	100	80.859	ENSMFAG00000000347	POP1	100	80.859	Macaca_fascicularis
ENSBTAG00000012596	POP1	100	80.664	ENSMNEG00000036870	POP1	100	80.664	Macaca_nemestrina
ENSBTAG00000012596	POP1	100	80.762	ENSMLEG00000034986	POP1	100	80.762	Mandrillus_leucophaeus
ENSBTAG00000012596	POP1	100	47.143	ENSMAMG00000004040	pop1	100	47.764	Mastacembelus_armatus
ENSBTAG00000012596	POP1	100	48.387	ENSMZEG00005025448	pop1	100	48.436	Maylandia_zebra
ENSBTAG00000012596	POP1	100	55.325	ENSMGAG00000012167	POP1	100	56.026	Meleagris_gallopavo
ENSBTAG00000012596	POP1	100	72.870	ENSMAUG00000017537	Pop1	100	72.380	Mesocricetus_auratus
ENSBTAG00000012596	POP1	100	79.668	ENSMICG00000004361	POP1	100	79.668	Microcebus_murinus
ENSBTAG00000012596	POP1	100	72.211	ENSMOCG00000006356	Pop1	100	72.168	Microtus_ochrogaster
ENSBTAG00000012596	POP1	100	44.714	ENSMMOG00000018242	pop1	95	47.238	Mola_mola
ENSBTAG00000012596	POP1	100	67.602	ENSMODG00000006561	POP1	100	67.345	Monodelphis_domestica
ENSBTAG00000012596	POP1	100	48.418	ENSMALG00000012621	POP1	100	48.418	Monopterus_albus
ENSBTAG00000012596	POP1	100	72.923	MGP_CAROLIEiJ_G0019726	Pop1	100	72.923	Mus_caroli
ENSBTAG00000012596	POP1	100	72.923	ENSMUSG00000022325	Pop1	100	72.923	Mus_musculus
ENSBTAG00000012596	POP1	100	73.412	MGP_PahariEiJ_G0019735	Pop1	100	73.216	Mus_pahari
ENSBTAG00000012596	POP1	100	72.825	MGP_SPRETEiJ_G0020622	Pop1	100	72.825	Mus_spretus
ENSBTAG00000012596	POP1	100	79.922	ENSMPUG00000015250	POP1	100	79.922	Mustela_putorius_furo
ENSBTAG00000012596	POP1	100	78.214	ENSMLUG00000010204	POP1	100	77.527	Myotis_lucifugus
ENSBTAG00000012596	POP1	100	76.442	ENSNGAG00000001582	Pop1	100	76.442	Nannospalax_galili
ENSBTAG00000012596	POP1	89	48.884	ENSNBRG00000002356	pop1	94	49.153	Neolamprologus_brichardi
ENSBTAG00000012596	POP1	100	80.273	ENSNLEG00000002541	POP1	100	80.273	Nomascus_leucogenys
ENSBTAG00000012596	POP1	94	59.485	ENSMEUG00000003118	POP1	98	59.053	Notamacropus_eugenii
ENSBTAG00000012596	POP1	100	74.316	ENSOPRG00000007667	POP1	100	73.926	Ochotona_princeps
ENSBTAG00000012596	POP1	100	75.828	ENSODEG00000003984	POP1	100	75.828	Octodon_degus
ENSBTAG00000012596	POP1	100	49.146	ENSONIG00000016445	pop1	100	48.910	Oreochromis_niloticus
ENSBTAG00000012596	POP1	59	70.552	ENSOANG00000001278	-	94	70.552	Ornithorhynchus_anatinus
ENSBTAG00000012596	POP1	100	77.745	ENSOCUG00000017400	POP1	100	77.648	Oryctolagus_cuniculus
ENSBTAG00000012596	POP1	92	49.738	ENSORLG00000002839	pop1	100	47.646	Oryzias_latipes
ENSBTAG00000012596	POP1	90	48.729	ENSORLG00020022450	POP1	96	49.049	Oryzias_latipes_hni
ENSBTAG00000012596	POP1	100	47.923	ENSORLG00015012746	POP1	100	47.839	Oryzias_latipes_hsok
ENSBTAG00000012596	POP1	100	48.145	ENSOMEG00000006915	pop1	99	47.559	Oryzias_melastigma
ENSBTAG00000012596	POP1	100	77.832	ENSOGAG00000001466	POP1	100	77.832	Otolemur_garnettii
ENSBTAG00000012596	POP1	100	80.762	ENSPPAG00000018410	POP1	100	80.859	Pan_paniscus
ENSBTAG00000012596	POP1	100	81.139	ENSPPRG00000005002	POP1	100	81.139	Panthera_pardus
ENSBTAG00000012596	POP1	100	81.532	ENSPTIG00000016527	POP1	100	81.532	Panthera_tigris_altaica
ENSBTAG00000012596	POP1	100	80.762	ENSPTRG00000020458	POP1	100	80.859	Pan_troglodytes
ENSBTAG00000012596	POP1	100	80.566	ENSPANG00000009704	POP1	100	80.566	Papio_anubis
ENSBTAG00000012596	POP1	100	49.806	ENSPKIG00000016325	POP1	95	53.589	Paramormyrops_kingsleyae
ENSBTAG00000012596	POP1	100	62.891	ENSPSIG00000012343	POP1	100	62.415	Pelodiscus_sinensis
ENSBTAG00000012596	POP1	90	49.892	ENSPMGG00000022253	POP1	95	48.835	Periophthalmus_magnuspinnatus
ENSBTAG00000012596	POP1	99	72.302	ENSPEMG00000023633	Pop1	100	72.302	Peromyscus_maniculatus_bairdii
ENSBTAG00000012596	POP1	90	43.677	ENSPMAG00000003209	POP1	100	43.492	Petromyzon_marinus
ENSBTAG00000012596	POP1	100	66.731	ENSPCIG00000012216	POP1	100	66.731	Phascolarctos_cinereus
ENSBTAG00000012596	POP1	100	48.412	ENSPFOG00000012490	POP1	100	48.276	Poecilia_formosa
ENSBTAG00000012596	POP1	100	48.219	ENSPLAG00000004646	POP1	100	48.084	Poecilia_latipinna
ENSBTAG00000012596	POP1	100	48.940	ENSPMEG00000019592	POP1	100	48.322	Poecilia_mexicana
ENSBTAG00000012596	POP1	100	49.565	ENSPREG00000020951	POP1	100	49.372	Poecilia_reticulata
ENSBTAG00000012596	POP1	100	80.762	ENSPPYG00000018777	POP1	100	80.762	Pongo_abelii
ENSBTAG00000012596	POP1	100	72.683	ENSPCAG00000016662	POP1	100	72.000	Procavia_capensis
ENSBTAG00000012596	POP1	100	80.352	ENSPCOG00000019420	POP1	100	80.352	Propithecus_coquereli
ENSBTAG00000012596	POP1	100	81.238	ENSPVAG00000014468	POP1	100	81.238	Pteropus_vampyrus
ENSBTAG00000012596	POP1	89	49.946	ENSPNYG00000004476	pop1	95	49.840	Pundamilia_nyererei
ENSBTAG00000012596	POP1	100	44.496	ENSPNAG00000000265	pop1	91	69.512	Pygocentrus_nattereri
ENSBTAG00000012596	POP1	100	73.607	ENSRNOG00000005243	Pop1	100	73.607	Rattus_norvegicus
ENSBTAG00000012596	POP1	100	80.762	ENSRBIG00000007996	POP1	100	80.762	Rhinopithecus_bieti
ENSBTAG00000012596	POP1	100	80.859	ENSRROG00000012334	POP1	100	80.859	Rhinopithecus_roxellana
ENSBTAG00000012596	POP1	99	80.040	ENSSBOG00000020830	POP1	100	79.249	Saimiri_boliviensis_boliviensis
ENSBTAG00000012596	POP1	100	66.538	ENSSHAG00000000296	POP1	100	66.250	Sarcophilus_harrisii
ENSBTAG00000012596	POP1	100	49.421	ENSSFOG00015007429	pop1	99	49.228	Scleropages_formosus
ENSBTAG00000012596	POP1	86	53.625	ENSSMAG00000010467	POP1	99	48.610	Scophthalmus_maximus
ENSBTAG00000012596	POP1	100	47.363	ENSSDUG00000007817	POP1	100	47.363	Seriola_dumerili
ENSBTAG00000012596	POP1	100	47.170	ENSSLDG00000012565	POP1	100	47.358	Seriola_lalandi_dorsalis
ENSBTAG00000012596	POP1	100	58.732	ENSSPUG00000003550	-	100	57.703	Sphenodon_punctatus
ENSBTAG00000012596	POP1	90	50.758	ENSSPAG00000014955	pop1	94	50.000	Stegastes_partitus
ENSBTAG00000012596	POP1	100	84.154	ENSSSCG00000006078	POP1	100	84.154	Sus_scrofa
ENSBTAG00000012596	POP1	92	54.739	ENSTGUG00000012011	-	100	54.739	Taeniopygia_guttata
ENSBTAG00000012596	POP1	91	48.778	ENSTRUG00000010856	pop1	94	48.353	Takifugu_rubripes
ENSBTAG00000012596	POP1	95	74.898	ENSTBEG00000014214	POP1	99	74.898	Tupaia_belangeri
ENSBTAG00000012596	POP1	100	84.154	ENSTTRG00000016071	POP1	100	84.154	Tursiops_truncatus
ENSBTAG00000012596	POP1	99	78.308	ENSUAMG00000017309	POP1	100	78.308	Ursus_americanus
ENSBTAG00000012596	POP1	100	80.214	ENSUMAG00000016952	POP1	100	87.854	Ursus_maritimus
ENSBTAG00000012596	POP1	82	90.842	ENSVPAG00000008278	POP1	81	90.842	Vicugna_pacos
ENSBTAG00000012596	POP1	100	80.334	ENSVVUG00000010994	POP1	100	80.334	Vulpes_vulpes
ENSBTAG00000012596	POP1	100	44.573	ENSXCOG00000017043	POP1	100	44.359	Xiphophorus_couchianus
ENSBTAG00000012596	POP1	100	48.552	ENSXMAG00000002472	POP1	100	48.359	Xiphophorus_maculatus