EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000012699 (Gene tree)
Gene ID: 506018
Gene Symbol: EXOSC1
Alias: -
Full Name: Bos taurus exosome component 1 (EXOSC1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 6633 bases
Position: chr26:18657377-18664009
Accession: NM_001015529
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000016879	EXOSC1	PF10447.9	7e-15	1	1
ENSBTAP00000016879	ECR1_N	PF14382.6	7e-09	1	1
ENSBTAP00000066143	ECR1_N	PF14382.6	7.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000081396	-	582	-	ENSBTAP00000066143	193 (aa)	-	-
ENSBTAT00000016879	-	885	-	ENSBTAP00000016879	195 (aa)	-	Q5E9E9

Gene Model

Click here to download ENSBTAG00000012699's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000012699's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000012699	EXOSC1	100	96.923	ENSG00000171311	EXOSC1	100	96.923	Homo_sapiens
ENSBTAG00000012699	EXOSC1	98	80.628	ENSAPOG00000007822	exosc1	98	80.628	Acanthochromis_polyacanthus
ENSBTAG00000012699	EXOSC1	100	99.487	ENSAMEG00000000129	EXOSC1	100	99.487	Ailuropoda_melanoleuca
ENSBTAG00000012699	EXOSC1	96	80.319	ENSACIG00000018956	exosc1	92	80.319	Amphilophus_citrinellus
ENSBTAG00000012699	EXOSC1	98	80.628	ENSAOCG00000010699	exosc1	98	80.628	Amphiprion_ocellaris
ENSBTAG00000012699	EXOSC1	92	71.508	ENSAPEG00000012690	exosc1	96	71.508	Amphiprion_percula
ENSBTAG00000012699	EXOSC1	98	80.105	ENSATEG00000018683	exosc1	98	80.105	Anabas_testudineus
ENSBTAG00000012699	EXOSC1	99	86.010	ENSACAG00000002101	EXOSC1	99	86.010	Anolis_carolinensis
ENSBTAG00000012699	EXOSC1	100	98.462	ENSANAG00000034669	EXOSC1	100	98.462	Aotus_nancymaae
ENSBTAG00000012699	EXOSC1	98	80.628	ENSACLG00000021243	exosc1	98	80.628	Astatotilapia_calliptera
ENSBTAG00000012699	EXOSC1	98	82.199	ENSAMXG00000011116	exosc1	98	82.199	Astyanax_mexicanus
ENSBTAG00000012699	EXOSC1	92	33.511	WBGene00012966	exos-1	90	33.511	Caenorhabditis_elegans
ENSBTAG00000012699	EXOSC1	100	97.949	ENSCJAG00000016586	EXOSC1	100	97.949	Callithrix_jacchus
ENSBTAG00000012699	EXOSC1	100	98.974	ENSCAFG00000009068	EXOSC1	94	98.974	Canis_familiaris
ENSBTAG00000012699	EXOSC1	100	98.974	ENSCAFG00020006002	EXOSC1	94	98.974	Canis_lupus_dingo
ENSBTAG00000012699	EXOSC1	100	100.000	ENSCHIG00000015253	EXOSC1	100	100.000	Capra_hircus
ENSBTAG00000012699	EXOSC1	100	97.436	ENSTSYG00000000760	EXOSC1	100	97.436	Carlito_syrichta
ENSBTAG00000012699	EXOSC1	100	98.462	ENSCPOG00000001173	EXOSC1	100	98.462	Cavia_porcellus
ENSBTAG00000012699	EXOSC1	100	56.345	ENSCCAG00000023986	EXOSC1	100	56.345	Cebus_capucinus
ENSBTAG00000012699	EXOSC1	100	96.923	ENSCATG00000034114	EXOSC1	100	96.923	Cercocebus_atys
ENSBTAG00000012699	EXOSC1	100	98.974	ENSCLAG00000002463	EXOSC1	100	98.974	Chinchilla_lanigera
ENSBTAG00000012699	EXOSC1	100	96.410	ENSCSAG00000005870	EXOSC1	100	96.410	Chlorocebus_sabaeus
ENSBTAG00000012699	EXOSC1	96	83.957	ENSCHOG00000006477	EXOSC1	100	83.957	Choloepus_hoffmanni
ENSBTAG00000012699	EXOSC1	54	82.075	ENSCPBG00000011949	EXOSC1	88	82.075	Chrysemys_picta_bellii
ENSBTAG00000012699	EXOSC1	95	56.684	ENSCING00000022734	-	89	56.684	Ciona_intestinalis
ENSBTAG00000012699	EXOSC1	95	58.289	ENSCSAVG00000010865	-	95	58.289	Ciona_savignyi
ENSBTAG00000012699	EXOSC1	100	96.923	ENSCANG00000034159	EXOSC1	100	96.923	Colobus_angolensis_palliatus
ENSBTAG00000012699	EXOSC1	100	97.949	ENSCGRG00001000335	Exosc1	100	97.949	Cricetulus_griseus_chok1gshd
ENSBTAG00000012699	EXOSC1	100	97.949	ENSCGRG00000011602	Exosc1	100	97.949	Cricetulus_griseus_crigri
ENSBTAG00000012699	EXOSC1	98	67.539	ENSCSEG00000007895	exosc1	95	67.539	Cynoglossus_semilaevis
ENSBTAG00000012699	EXOSC1	98	76.963	ENSCVAG00000016748	exosc1	98	76.963	Cyprinodon_variegatus
ENSBTAG00000012699	EXOSC1	98	81.152	ENSDARG00000059841	exosc1	98	81.152	Danio_rerio
ENSBTAG00000012699	EXOSC1	75	97.973	ENSDNOG00000007983	EXOSC1	100	97.973	Dasypus_novemcinctus
ENSBTAG00000012699	EXOSC1	100	98.462	ENSDORG00000016528	Exosc1	100	98.462	Dipodomys_ordii
ENSBTAG00000012699	EXOSC1	94	48.148	FBgn0032346	Csl4	92	48.148	Drosophila_melanogaster
ENSBTAG00000012699	EXOSC1	100	95.385	ENSETEG00000002469	-	100	95.385	Echinops_telfairi
ENSBTAG00000012699	EXOSC1	99	62.755	ENSEBUG00000008164	exosc1	98	62.755	Eptatretus_burgeri
ENSBTAG00000012699	EXOSC1	100	88.205	ENSEASG00005008684	EXOSC1	100	88.205	Equus_asinus_asinus
ENSBTAG00000012699	EXOSC1	61	78.151	ENSECAG00000010621	EXOSC1	71	78.151	Equus_caballus
ENSBTAG00000012699	EXOSC1	100	97.436	ENSEEUG00000005647	EXOSC1	100	97.436	Erinaceus_europaeus
ENSBTAG00000012699	EXOSC1	94	81.522	ENSELUG00000017369	exosc1	81	81.522	Esox_lucius
ENSBTAG00000012699	EXOSC1	100	99.487	ENSFCAG00000040563	EXOSC1	94	99.487	Felis_catus
ENSBTAG00000012699	EXOSC1	100	83.077	ENSFALG00000008450	EXOSC1	100	83.077	Ficedula_albicollis
ENSBTAG00000012699	EXOSC1	100	98.462	ENSFDAG00000000846	EXOSC1	100	98.462	Fukomys_damarensis
ENSBTAG00000012699	EXOSC1	98	76.963	ENSFHEG00000009154	exosc1	98	76.963	Fundulus_heteroclitus
ENSBTAG00000012699	EXOSC1	98	80.628	ENSGMOG00000008993	exosc1	98	80.628	Gadus_morhua
ENSBTAG00000012699	EXOSC1	100	72.821	ENSGALG00000039917	EXOSC1	100	86.301	Gallus_gallus
ENSBTAG00000012699	EXOSC1	98	76.963	ENSGAFG00000010265	exosc1	94	76.963	Gambusia_affinis
ENSBTAG00000012699	EXOSC1	98	80.628	ENSGACG00000018936	exosc1	98	80.628	Gasterosteus_aculeatus
ENSBTAG00000012699	EXOSC1	100	85.128	ENSGAGG00000019192	EXOSC1	100	85.128	Gopherus_agassizii
ENSBTAG00000012699	EXOSC1	100	85.128	ENSGGOG00000003099	EXOSC1	100	85.128	Gorilla_gorilla
ENSBTAG00000012699	EXOSC1	98	80.628	ENSHBUG00000017857	exosc1	98	80.628	Haplochromis_burtoni
ENSBTAG00000012699	EXOSC1	100	97.949	ENSHGLG00000016927	EXOSC1	100	97.949	Heterocephalus_glaber_female
ENSBTAG00000012699	EXOSC1	100	97.949	ENSHGLG00100012208	EXOSC1	100	97.949	Heterocephalus_glaber_male
ENSBTAG00000012699	EXOSC1	98	79.581	ENSHCOG00000019882	exosc1	98	79.581	Hippocampus_comes
ENSBTAG00000012699	EXOSC1	98	81.152	ENSIPUG00000007685	exosc1	98	81.152	Ictalurus_punctatus
ENSBTAG00000012699	EXOSC1	100	98.462	ENSSTOG00000006615	EXOSC1	100	98.462	Ictidomys_tridecemlineatus
ENSBTAG00000012699	EXOSC1	63	82.787	ENSSTOG00000029860	-	93	82.787	Ictidomys_tridecemlineatus
ENSBTAG00000012699	EXOSC1	100	99.487	ENSJJAG00000013311	Exosc1	100	99.487	Jaculus_jaculus
ENSBTAG00000012699	EXOSC1	98	78.646	ENSKMAG00000001202	exosc1	81	78.646	Kryptolebias_marmoratus
ENSBTAG00000012699	EXOSC1	98	80.105	ENSLBEG00000011448	exosc1	98	80.105	Labrus_bergylta
ENSBTAG00000012699	EXOSC1	98	59.184	ENSLOCG00000003776	exosc1	99	59.184	Lepisosteus_oculatus
ENSBTAG00000012699	EXOSC1	100	97.436	ENSLAFG00000015983	EXOSC1	100	97.436	Loxodonta_africana
ENSBTAG00000012699	EXOSC1	100	96.923	ENSMFAG00000001493	EXOSC1	100	96.923	Macaca_fascicularis
ENSBTAG00000012699	EXOSC1	100	96.923	ENSMMUG00000020028	EXOSC1	100	91.960	Macaca_mulatta
ENSBTAG00000012699	EXOSC1	100	96.923	ENSMNEG00000029816	EXOSC1	100	96.923	Macaca_nemestrina
ENSBTAG00000012699	EXOSC1	100	92.228	ENSMLEG00000027643	EXOSC1	100	92.228	Mandrillus_leucophaeus
ENSBTAG00000012699	EXOSC1	98	81.152	ENSMAMG00000012200	exosc1	98	81.152	Mastacembelus_armatus
ENSBTAG00000012699	EXOSC1	98	80.628	ENSMZEG00005007042	exosc1	98	80.628	Maylandia_zebra
ENSBTAG00000012699	EXOSC1	100	86.154	ENSMAUG00000020462	-	100	86.154	Mesocricetus_auratus
ENSBTAG00000012699	EXOSC1	100	97.949	ENSMICG00000007664	EXOSC1	92	97.949	Microcebus_murinus
ENSBTAG00000012699	EXOSC1	97	91.579	ENSMOCG00000017124	-	97	91.579	Microtus_ochrogaster
ENSBTAG00000012699	EXOSC1	100	97.949	ENSMOCG00000006004	-	100	97.949	Microtus_ochrogaster
ENSBTAG00000012699	EXOSC1	99	61.458	ENSMMOG00000021403	exosc1	99	61.458	Mola_mola
ENSBTAG00000012699	EXOSC1	100	92.857	ENSMODG00000004213	EXOSC1	100	92.857	Monodelphis_domestica
ENSBTAG00000012699	EXOSC1	94	81.522	ENSMALG00000007061	exosc1	92	81.522	Monopterus_albus
ENSBTAG00000012699	EXOSC1	100	97.436	MGP_CAROLIEiJ_G0022959	Exosc1	100	97.436	Mus_caroli
ENSBTAG00000012699	EXOSC1	100	96.923	ENSMUSG00000034321	Exosc1	100	96.923	Mus_musculus
ENSBTAG00000012699	EXOSC1	100	97.949	MGP_PahariEiJ_G0014449	Exosc1	100	97.949	Mus_pahari
ENSBTAG00000012699	EXOSC1	100	97.436	MGP_SPRETEiJ_G0023880	Exosc1	100	97.436	Mus_spretus
ENSBTAG00000012699	EXOSC1	100	99.487	ENSMPUG00000017044	EXOSC1	100	99.487	Mustela_putorius_furo
ENSBTAG00000012699	EXOSC1	100	97.949	ENSMLUG00000009228	EXOSC1	100	97.949	Myotis_lucifugus
ENSBTAG00000012699	EXOSC1	100	96.923	ENSNGAG00000022033	Exosc1	100	96.923	Nannospalax_galili
ENSBTAG00000012699	EXOSC1	98	61.579	ENSNBRG00000024007	exosc1	98	61.579	Neolamprologus_brichardi
ENSBTAG00000012699	EXOSC1	100	96.410	ENSNLEG00000013872	EXOSC1	100	96.410	Nomascus_leucogenys
ENSBTAG00000012699	EXOSC1	59	91.304	ENSMEUG00000002246	EXOSC1	100	91.304	Notamacropus_eugenii
ENSBTAG00000012699	EXOSC1	100	97.436	ENSOPRG00000005065	EXOSC1	100	97.436	Ochotona_princeps
ENSBTAG00000012699	EXOSC1	100	98.462	ENSODEG00000016709	EXOSC1	100	98.462	Octodon_degus
ENSBTAG00000012699	EXOSC1	98	80.628	ENSONIG00000017683	exosc1	98	80.628	Oreochromis_niloticus
ENSBTAG00000012699	EXOSC1	59	93.913	ENSOANG00000006563	EXOSC1	98	91.935	Ornithorhynchus_anatinus
ENSBTAG00000012699	EXOSC1	100	92.821	ENSOCUG00000026461	-	100	92.821	Oryctolagus_cuniculus
ENSBTAG00000012699	EXOSC1	100	97.959	ENSOCUG00000011898	-	100	97.959	Oryctolagus_cuniculus
ENSBTAG00000012699	EXOSC1	98	79.167	ENSORLG00000011595	exosc1	98	79.167	Oryzias_latipes
ENSBTAG00000012699	EXOSC1	98	79.167	ENSORLG00020005831	exosc1	98	79.167	Oryzias_latipes_hni
ENSBTAG00000012699	EXOSC1	98	79.167	ENSORLG00015004317	exosc1	98	79.167	Oryzias_latipes_hsok
ENSBTAG00000012699	EXOSC1	98	66.138	ENSOMEG00000013907	exosc1	98	66.138	Oryzias_melastigma
ENSBTAG00000012699	EXOSC1	100	98.462	ENSOGAG00000016259	EXOSC1	100	98.462	Otolemur_garnettii
ENSBTAG00000012699	EXOSC1	100	99.487	ENSOARG00000010136	EXOSC1	100	99.487	Ovis_aries
ENSBTAG00000012699	EXOSC1	100	92.893	ENSPPAG00000039842	EXOSC1	100	92.893	Pan_paniscus
ENSBTAG00000012699	EXOSC1	100	99.487	ENSPPRG00000023366	EXOSC1	100	99.487	Panthera_pardus
ENSBTAG00000012699	EXOSC1	100	99.487	ENSPTIG00000017701	EXOSC1	100	99.487	Panthera_tigris_altaica
ENSBTAG00000012699	EXOSC1	100	96.923	ENSPTRG00000002808	EXOSC1	100	96.923	Pan_troglodytes
ENSBTAG00000012699	EXOSC1	100	96.923	ENSPANG00000021324	EXOSC1	100	96.923	Papio_anubis
ENSBTAG00000012699	EXOSC1	98	81.675	ENSPKIG00000016037	exosc1	98	81.675	Paramormyrops_kingsleyae
ENSBTAG00000012699	EXOSC1	75	81.507	ENSPSIG00000013571	EXOSC1	98	81.148	Pelodiscus_sinensis
ENSBTAG00000012699	EXOSC1	98	68.586	ENSPMGG00000014002	exosc1	98	68.586	Periophthalmus_magnuspinnatus
ENSBTAG00000012699	EXOSC1	100	97.949	ENSPEMG00000010710	-	100	97.949	Peromyscus_maniculatus_bairdii
ENSBTAG00000012699	EXOSC1	95	71.658	ENSPMAG00000000195	exosc1	95	71.658	Petromyzon_marinus
ENSBTAG00000012699	EXOSC1	100	93.846	ENSPCIG00000002210	EXOSC1	99	93.846	Phascolarctos_cinereus
ENSBTAG00000012699	EXOSC1	98	76.042	ENSPFOG00000006755	exosc1	94	76.042	Poecilia_formosa
ENSBTAG00000012699	EXOSC1	98	76.440	ENSPLAG00000005880	exosc1	98	76.440	Poecilia_latipinna
ENSBTAG00000012699	EXOSC1	98	76.042	ENSPMEG00000015598	exosc1	94	76.042	Poecilia_mexicana
ENSBTAG00000012699	EXOSC1	98	66.146	ENSPREG00000000405	exosc1	93	66.146	Poecilia_reticulata
ENSBTAG00000012699	EXOSC1	100	96.410	ENSPPYG00000002531	EXOSC1	100	96.410	Pongo_abelii
ENSBTAG00000012699	EXOSC1	100	97.436	ENSPCAG00000009135	EXOSC1	100	97.436	Procavia_capensis
ENSBTAG00000012699	EXOSC1	100	92.746	ENSPCOG00000027539	EXOSC1	100	92.746	Propithecus_coquereli
ENSBTAG00000012699	EXOSC1	100	98.462	ENSPVAG00000003372	EXOSC1	100	98.462	Pteropus_vampyrus
ENSBTAG00000012699	EXOSC1	98	80.628	ENSPNYG00000021745	exosc1	98	80.628	Pundamilia_nyererei
ENSBTAG00000012699	EXOSC1	98	81.152	ENSPNAG00000001944	exosc1	98	81.152	Pygocentrus_nattereri
ENSBTAG00000012699	EXOSC1	100	97.949	ENSRNOG00000048708	Exosc1	100	97.949	Rattus_norvegicus
ENSBTAG00000012699	EXOSC1	100	96.923	ENSRBIG00000035618	EXOSC1	100	96.923	Rhinopithecus_bieti
ENSBTAG00000012699	EXOSC1	100	96.923	ENSRROG00000032589	EXOSC1	92	96.923	Rhinopithecus_roxellana
ENSBTAG00000012699	EXOSC1	100	98.462	ENSSBOG00000000359	EXOSC1	100	98.462	Saimiri_boliviensis_boliviensis
ENSBTAG00000012699	EXOSC1	75	95.918	ENSSHAG00000018219	EXOSC1	100	95.918	Sarcophilus_harrisii
ENSBTAG00000012699	EXOSC1	98	82.812	ENSSFOG00015009069	exosc1	99	82.812	Scleropages_formosus
ENSBTAG00000012699	EXOSC1	97	78.421	ENSSFOG00015016289	-	98	78.421	Scleropages_formosus
ENSBTAG00000012699	EXOSC1	98	81.152	ENSSMAG00000003721	exosc1	98	81.152	Scophthalmus_maximus
ENSBTAG00000012699	EXOSC1	98	81.152	ENSSDUG00000002993	exosc1	98	81.152	Seriola_dumerili
ENSBTAG00000012699	EXOSC1	98	81.152	ENSSLDG00000025181	exosc1	98	81.152	Seriola_lalandi_dorsalis
ENSBTAG00000012699	EXOSC1	100	84.103	ENSSARG00000000162	EXOSC1	100	84.103	Sorex_araneus
ENSBTAG00000012699	EXOSC1	99	83.505	ENSSPUG00000012263	EXOSC1	99	83.505	Sphenodon_punctatus
ENSBTAG00000012699	EXOSC1	98	72.251	ENSSPAG00000016792	exosc1	82	72.251	Stegastes_partitus
ENSBTAG00000012699	EXOSC1	100	98.462	ENSSSCG00000010518	EXOSC1	91	98.462	Sus_scrofa
ENSBTAG00000012699	EXOSC1	98	81.250	ENSTGUG00000009692	EXOSC1	99	81.250	Taeniopygia_guttata
ENSBTAG00000012699	EXOSC1	97	74.603	ENSTRUG00000007706	exosc1	98	74.603	Takifugu_rubripes
ENSBTAG00000012699	EXOSC1	97	74.479	ENSTNIG00000014079	exosc1	97	74.479	Tetraodon_nigroviridis
ENSBTAG00000012699	EXOSC1	100	89.744	ENSTBEG00000006011	EXOSC1	100	89.744	Tupaia_belangeri
ENSBTAG00000012699	EXOSC1	94	98.913	ENSTTRG00000009887	EXOSC1	100	98.913	Tursiops_truncatus
ENSBTAG00000012699	EXOSC1	100	84.456	ENSUAMG00000010266	EXOSC1	100	84.456	Ursus_americanus
ENSBTAG00000012699	EXOSC1	100	84.456	ENSUMAG00000022002	EXOSC1	100	84.456	Ursus_maritimus
ENSBTAG00000012699	EXOSC1	100	98.974	ENSVVUG00000023192	EXOSC1	63	98.974	Vulpes_vulpes
ENSBTAG00000012699	EXOSC1	98	79.167	ENSXETG00000003434	exosc1	99	79.167	Xenopus_tropicalis
ENSBTAG00000012699	EXOSC1	62	85.000	ENSXCOG00000014499	exosc1	92	85.000	Xiphophorus_couchianus
ENSBTAG00000012699	EXOSC1	98	66.667	ENSXMAG00000023382	exosc1	93	66.667	Xiphophorus_maculatus