EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000012955 (Gene tree)
Gene ID: 530353
Gene Symbol: TRUB1
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 31203 bases
Position: chr26:35387480-35418682
Accession: 36404
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000017209	TruB_N	PF01509.18	2.7e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000017209	-	1722	-	ENSBTAP00000017209	352 (aa)	XP_003587944	E1BEB7

Gene Model

Click here to download ENSBTAG00000012955's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000012955's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000012955	TRUB1	99	91.738	ENSG00000165832	TRUB1	98	92.398	Homo_sapiens
ENSBTAG00000012955	TRUB1	70	69.796	ENSAPOG00000020565	trub1	89	69.512	Acanthochromis_polyacanthus
ENSBTAG00000012955	TRUB1	95	93.491	ENSAMEG00000014931	TRUB1	98	93.023	Ailuropoda_melanoleuca
ENSBTAG00000012955	TRUB1	81	57.746	ENSACIG00000003060	trub1	94	57.746	Amphilophus_citrinellus
ENSBTAG00000012955	TRUB1	70	69.796	ENSAOCG00000017188	trub1	89	69.512	Amphiprion_ocellaris
ENSBTAG00000012955	TRUB1	70	69.106	ENSAPEG00000015209	trub1	89	69.106	Amphiprion_percula
ENSBTAG00000012955	TRUB1	68	69.710	ENSATEG00000023291	trub1	86	69.710	Anabas_testudineus
ENSBTAG00000012955	TRUB1	77	75.735	ENSAPLG00000006808	TRUB1	97	75.735	Anas_platyrhynchos
ENSBTAG00000012955	TRUB1	76	71.375	ENSACAG00000009282	TRUB1	97	71.375	Anolis_carolinensis
ENSBTAG00000012955	TRUB1	95	93.413	ENSANAG00000022870	TRUB1	97	92.669	Aotus_nancymaae
ENSBTAG00000012955	TRUB1	72	67.857	ENSACLG00000000823	trub1	91	67.857	Astatotilapia_calliptera
ENSBTAG00000012955	TRUB1	74	67.433	ENSAMXG00000015845	trub1	87	67.433	Astyanax_mexicanus
ENSBTAG00000012955	TRUB1	99	91.738	ENSCJAG00000047815	TRUB1	97	92.690	Callithrix_jacchus
ENSBTAG00000012955	TRUB1	99	92.877	ENSCAFG00000011688	TRUB1	98	93.567	Canis_familiaris
ENSBTAG00000012955	TRUB1	99	93.162	ENSCAFG00020013237	TRUB1	98	93.860	Canis_lupus_dingo
ENSBTAG00000012955	TRUB1	100	96.591	ENSCHIG00000020884	TRUB1	100	96.591	Capra_hircus
ENSBTAG00000012955	TRUB1	99	89.489	ENSTSYG00000000446	TRUB1	98	89.213	Carlito_syrichta
ENSBTAG00000012955	TRUB1	72	84.190	ENSCAPG00000017088	TRUB1	99	84.190	Cavia_aperea
ENSBTAG00000012955	TRUB1	71	79.600	ENSCPOG00000030129	-	84	79.253	Cavia_porcellus
ENSBTAG00000012955	TRUB1	70	84.615	ENSCPOG00000040236	-	98	85.714	Cavia_porcellus
ENSBTAG00000012955	TRUB1	95	92.857	ENSCCAG00000028842	TRUB1	97	92.398	Cebus_capucinus
ENSBTAG00000012955	TRUB1	99	91.453	ENSCATG00000033431	TRUB1	98	92.105	Cercocebus_atys
ENSBTAG00000012955	TRUB1	70	87.449	ENSCLAG00000008664	TRUB1	97	88.608	Chinchilla_lanigera
ENSBTAG00000012955	TRUB1	99	91.738	ENSCSAG00000004891	TRUB1	98	92.398	Chlorocebus_sabaeus
ENSBTAG00000012955	TRUB1	99	77.874	ENSCHOG00000011931	TRUB1	96	79.167	Choloepus_hoffmanni
ENSBTAG00000012955	TRUB1	77	79.044	ENSCPBG00000003051	TRUB1	94	79.044	Chrysemys_picta_bellii
ENSBTAG00000012955	TRUB1	99	91.738	ENSCANG00000029445	TRUB1	98	92.398	Colobus_angolensis_palliatus
ENSBTAG00000012955	TRUB1	80	78.648	ENSCGRG00001010322	-	80	78.305	Cricetulus_griseus_chok1gshd
ENSBTAG00000012955	TRUB1	72	85.882	ENSCGRG00001016772	-	90	77.517	Cricetulus_griseus_chok1gshd
ENSBTAG00000012955	TRUB1	80	87.189	ENSCGRG00000010806	Trub1	91	86.242	Cricetulus_griseus_crigri
ENSBTAG00000012955	TRUB1	73	62.891	ENSCSEG00000011261	trub1	97	57.143	Cynoglossus_semilaevis
ENSBTAG00000012955	TRUB1	70	69.388	ENSCVAG00000008791	trub1	79	67.054	Cyprinodon_variegatus
ENSBTAG00000012955	TRUB1	75	67.300	ENSDARG00000053805	trub1	90	67.300	Danio_rerio
ENSBTAG00000012955	TRUB1	95	87.126	ENSDNOG00000001069	TRUB1	95	87.126	Dasypus_novemcinctus
ENSBTAG00000012955	TRUB1	99	88.252	ENSDORG00000010431	Trub1	87	93.709	Dipodomys_ordii
ENSBTAG00000012955	TRUB1	81	78.049	ENSETEG00000009183	TRUB1	77	81.053	Echinops_telfairi
ENSBTAG00000012955	TRUB1	96	94.659	ENSEASG00005014739	TRUB1	98	94.169	Equus_asinus_asinus
ENSBTAG00000012955	TRUB1	96	94.659	ENSECAG00000007177	TRUB1	98	94.169	Equus_caballus
ENSBTAG00000012955	TRUB1	100	75.278	ENSEEUG00000013993	TRUB1	98	76.923	Erinaceus_europaeus
ENSBTAG00000012955	TRUB1	70	70.204	ENSELUG00000000502	trub1	86	70.204	Esox_lucius
ENSBTAG00000012955	TRUB1	95	94.030	ENSFCAG00000031927	TRUB1	98	93.255	Felis_catus
ENSBTAG00000012955	TRUB1	68	75.833	ENSFALG00000002232	TRUB1	92	75.833	Ficedula_albicollis
ENSBTAG00000012955	TRUB1	68	87.137	ENSFDAG00000008140	TRUB1	97	87.764	Fukomys_damarensis
ENSBTAG00000012955	TRUB1	70	66.531	ENSFHEG00000004016	trub1	89	63.846	Fundulus_heteroclitus
ENSBTAG00000012955	TRUB1	77	73.897	ENSGALG00000009091	TRUB1	96	73.897	Gallus_gallus
ENSBTAG00000012955	TRUB1	69	64.898	ENSGAFG00000009193	trub1	86	64.898	Gambusia_affinis
ENSBTAG00000012955	TRUB1	55	69.744	ENSGACG00000015387	trub1	96	69.744	Gasterosteus_aculeatus
ENSBTAG00000012955	TRUB1	88	73.139	ENSGAGG00000009758	TRUB1	81	77.817	Gopherus_agassizii
ENSBTAG00000012955	TRUB1	99	92.023	ENSGGOG00000004583	TRUB1	97	93.215	Gorilla_gorilla
ENSBTAG00000012955	TRUB1	72	67.857	ENSHBUG00000016787	trub1	91	67.857	Haplochromis_burtoni
ENSBTAG00000012955	TRUB1	100	86.080	ENSHGLG00000015314	TRUB1	98	86.842	Heterocephalus_glaber_female
ENSBTAG00000012955	TRUB1	70	85.020	ENSHGLG00100009183	TRUB1	97	86.076	Heterocephalus_glaber_male
ENSBTAG00000012955	TRUB1	70	68.980	ENSHCOG00000017877	trub1	89	68.980	Hippocampus_comes
ENSBTAG00000012955	TRUB1	76	67.041	ENSIPUG00000017559	trub1	95	66.914	Ictalurus_punctatus
ENSBTAG00000012955	TRUB1	86	93.377	ENSSTOG00000003641	TRUB1	98	86.880	Ictidomys_tridecemlineatus
ENSBTAG00000012955	TRUB1	100	84.091	ENSJJAG00000011800	Trub1	98	84.840	Jaculus_jaculus
ENSBTAG00000012955	TRUB1	72	66.926	ENSKMAG00000006232	trub1	92	66.926	Kryptolebias_marmoratus
ENSBTAG00000012955	TRUB1	76	65.414	ENSLBEG00000026722	trub1	92	65.414	Labrus_bergylta
ENSBTAG00000012955	TRUB1	78	72.826	ENSLACG00000014885	TRUB1	92	72.826	Latimeria_chalumnae
ENSBTAG00000012955	TRUB1	78	71.062	ENSLOCG00000012979	trub1	93	71.062	Lepisosteus_oculatus
ENSBTAG00000012955	TRUB1	99	79.050	ENSLAFG00000015452	TRUB1	86	85.333	Loxodonta_africana
ENSBTAG00000012955	TRUB1	99	91.453	ENSMFAG00000031767	TRUB1	98	92.105	Macaca_fascicularis
ENSBTAG00000012955	TRUB1	99	91.738	ENSMMUG00000001902	TRUB1	98	92.398	Macaca_mulatta
ENSBTAG00000012955	TRUB1	99	87.464	ENSMNEG00000044646	TRUB1	98	88.012	Macaca_nemestrina
ENSBTAG00000012955	TRUB1	99	91.453	ENSMLEG00000042655	TRUB1	98	92.105	Mandrillus_leucophaeus
ENSBTAG00000012955	TRUB1	72	67.857	ENSMZEG00005024095	trub1	91	67.857	Maylandia_zebra
ENSBTAG00000012955	TRUB1	78	73.358	ENSMGAG00000011135	TRUB1	94	73.358	Meleagris_gallopavo
ENSBTAG00000012955	TRUB1	85	84.281	ENSMAUG00000011101	Trub1	89	84.385	Mesocricetus_auratus
ENSBTAG00000012955	TRUB1	100	93.182	ENSMICG00000016324	TRUB1	98	93.586	Microcebus_murinus
ENSBTAG00000012955	TRUB1	93	82.515	ENSMOCG00000017759	Trub1	91	86.093	Microtus_ochrogaster
ENSBTAG00000012955	TRUB1	81	82.168	ENSMODG00000009676	TRUB1	81	80.405	Monodelphis_domestica
ENSBTAG00000012955	TRUB1	100	79.830	MGP_CAROLIEiJ_G0023100	Trub1	89	85.762	Mus_caroli
ENSBTAG00000012955	TRUB1	100	78.693	ENSMUSG00000025086	Trub1	89	84.768	Mus_musculus
ENSBTAG00000012955	TRUB1	100	80.114	MGP_PahariEiJ_G0014588	Trub1	89	86.093	Mus_pahari
ENSBTAG00000012955	TRUB1	100	78.977	MGP_SPRETEiJ_G0024021	Trub1	89	85.099	Mus_spretus
ENSBTAG00000012955	TRUB1	95	94.643	ENSMPUG00000003556	TRUB1	98	94.152	Mustela_putorius_furo
ENSBTAG00000012955	TRUB1	95	88.288	ENSMLUG00000017686	TRUB1	96	86.726	Myotis_lucifugus
ENSBTAG00000012955	TRUB1	100	86.080	ENSNGAG00000018682	Trub1	97	88.427	Nannospalax_galili
ENSBTAG00000012955	TRUB1	70	69.106	ENSNBRG00000023393	trub1	88	69.106	Neolamprologus_brichardi
ENSBTAG00000012955	TRUB1	95	92.560	ENSNLEG00000016345	TRUB1	98	92.105	Nomascus_leucogenys
ENSBTAG00000012955	TRUB1	57	90.050	ENSMEUG00000006603	TRUB1	78	87.204	Notamacropus_eugenii
ENSBTAG00000012955	TRUB1	86	85.762	ENSOPRG00000009371	TRUB1	88	85.762	Ochotona_princeps
ENSBTAG00000012955	TRUB1	100	84.375	ENSODEG00000010854	TRUB1	98	85.131	Octodon_degus
ENSBTAG00000012955	TRUB1	70	67.886	ENSONIG00000007249	trub1	89	67.886	Oreochromis_niloticus
ENSBTAG00000012955	TRUB1	78	80.657	ENSOANG00000001556	TRUB1	93	78.445	Ornithorhynchus_anatinus
ENSBTAG00000012955	TRUB1	94	87.952	ENSOCUG00000009456	TRUB1	96	87.952	Oryctolagus_cuniculus
ENSBTAG00000012955	TRUB1	69	69.835	ENSORLG00000029719	trub1	87	69.835	Oryzias_latipes
ENSBTAG00000012955	TRUB1	69	69.421	ENSORLG00020016767	trub1	86	69.421	Oryzias_latipes_hni
ENSBTAG00000012955	TRUB1	69	69.421	ENSORLG00015014728	trub1	87	69.421	Oryzias_latipes_hsok
ENSBTAG00000012955	TRUB1	74	67.568	ENSOMEG00000014556	trub1	85	69.835	Oryzias_melastigma
ENSBTAG00000012955	TRUB1	100	93.466	ENSOGAG00000015895	TRUB1	98	94.737	Otolemur_garnettii
ENSBTAG00000012955	TRUB1	97	92.264	ENSOARG00000015591	TRUB1	98	92.000	Ovis_aries
ENSBTAG00000012955	TRUB1	99	92.023	ENSPPAG00000043645	TRUB1	98	92.690	Pan_paniscus
ENSBTAG00000012955	TRUB1	95	93.731	ENSPPRG00000007096	TRUB1	98	92.962	Panthera_pardus
ENSBTAG00000012955	TRUB1	95	93.731	ENSPTIG00000006378	TRUB1	98	92.962	Panthera_tigris_altaica
ENSBTAG00000012955	TRUB1	99	92.023	ENSPTRG00000002964	TRUB1	98	92.690	Pan_troglodytes
ENSBTAG00000012955	TRUB1	99	91.453	ENSPANG00000020712	TRUB1	98	92.105	Papio_anubis
ENSBTAG00000012955	TRUB1	77	77.206	ENSPSIG00000012877	TRUB1	93	77.206	Pelodiscus_sinensis
ENSBTAG00000012955	TRUB1	70	66.122	ENSPMGG00000000075	trub1	88	66.122	Periophthalmus_magnuspinnatus
ENSBTAG00000012955	TRUB1	86	83.721	ENSPEMG00000011156	Trub1	89	83.721	Peromyscus_maniculatus_bairdii
ENSBTAG00000012955	TRUB1	81	82.168	ENSPCIG00000009729	TRUB1	79	81.164	Phascolarctos_cinereus
ENSBTAG00000012955	TRUB1	70	67.347	ENSPFOG00000009950	trub1	90	67.347	Poecilia_formosa
ENSBTAG00000012955	TRUB1	70	66.939	ENSPLAG00000013855	trub1	86	66.939	Poecilia_latipinna
ENSBTAG00000012955	TRUB1	70	67.347	ENSPMEG00000009064	trub1	88	67.347	Poecilia_mexicana
ENSBTAG00000012955	TRUB1	70	68.163	ENSPREG00000003343	trub1	88	68.163	Poecilia_reticulata
ENSBTAG00000012955	TRUB1	95	92.857	ENSPPYG00000002676	TRUB1	98	92.398	Pongo_abelii
ENSBTAG00000012955	TRUB1	99	75.071	ENSPCAG00000008427	TRUB1	85	78.667	Procavia_capensis
ENSBTAG00000012955	TRUB1	100	87.500	ENSPCOG00000024360	TRUB1	98	87.755	Propithecus_coquereli
ENSBTAG00000012955	TRUB1	76	92.105	ENSPVAG00000007575	TRUB1	98	92.607	Pteropus_vampyrus
ENSBTAG00000012955	TRUB1	72	67.857	ENSPNYG00000018614	trub1	91	67.857	Pundamilia_nyererei
ENSBTAG00000012955	TRUB1	74	59.615	ENSPNAG00000006881	trub1	84	59.615	Pygocentrus_nattereri
ENSBTAG00000012955	TRUB1	86	86.424	ENSRNOG00000017321	Trub1	89	86.424	Rattus_norvegicus
ENSBTAG00000012955	TRUB1	99	82.051	ENSRBIG00000033423	TRUB1	98	82.456	Rhinopithecus_bieti
ENSBTAG00000012955	TRUB1	99	91.453	ENSRROG00000033902	TRUB1	98	92.105	Rhinopithecus_roxellana
ENSBTAG00000012955	TRUB1	95	93.155	ENSSBOG00000024237	TRUB1	97	92.690	Saimiri_boliviensis_boliviensis
ENSBTAG00000012955	TRUB1	72	80.078	ENSSHAG00000009346	TRUB1	86	80.078	Sarcophilus_harrisii
ENSBTAG00000012955	TRUB1	69	70.782	ENSSFOG00015022124	trub1	83	70.782	Scleropages_formosus
ENSBTAG00000012955	TRUB1	70	69.512	ENSSMAG00000001020	trub1	88	69.512	Scophthalmus_maximus
ENSBTAG00000012955	TRUB1	68	70.417	ENSSDUG00000016414	trub1	88	70.325	Seriola_dumerili
ENSBTAG00000012955	TRUB1	68	70.833	ENSSLDG00000015486	trub1	88	70.732	Seriola_lalandi_dorsalis
ENSBTAG00000012955	TRUB1	80	77.500	ENSSPUG00000001642	TRUB1	96	77.500	Sphenodon_punctatus
ENSBTAG00000012955	TRUB1	75	67.681	ENSSPAG00000001217	trub1	94	67.681	Stegastes_partitus
ENSBTAG00000012955	TRUB1	100	88.636	ENSSSCG00000010653	TRUB1	98	89.504	Sus_scrofa
ENSBTAG00000012955	TRUB1	77	75.556	ENSTGUG00000010971	TRUB1	97	75.368	Taeniopygia_guttata
ENSBTAG00000012955	TRUB1	72	78.261	ENSTBEG00000002880	TRUB1	99	78.261	Tupaia_belangeri
ENSBTAG00000012955	TRUB1	71	90.837	ENSTTRG00000005767	TRUB1	97	94.553	Tursiops_truncatus
ENSBTAG00000012955	TRUB1	95	95.536	ENSUAMG00000024876	TRUB1	98	95.029	Ursus_americanus
ENSBTAG00000012955	TRUB1	84	97.627	ENSUMAG00000002411	TRUB1	98	91.228	Ursus_maritimus
ENSBTAG00000012955	TRUB1	100	93.182	ENSVPAG00000005507	TRUB1	97	94.412	Vicugna_pacos
ENSBTAG00000012955	TRUB1	99	91.168	ENSVVUG00000010085	TRUB1	82	92.690	Vulpes_vulpes
ENSBTAG00000012955	TRUB1	77	66.912	ENSXETG00000023828	trub1	98	66.912	Xenopus_tropicalis
ENSBTAG00000012955	TRUB1	69	65.164	ENSXCOG00000017847	trub1	86	65.164	Xiphophorus_couchianus
ENSBTAG00000012955	TRUB1	70	66.531	ENSXMAG00000014701	trub1	88	66.531	Xiphophorus_maculatus