EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000012999 (Gene tree)
Gene ID: 540731
Gene Symbol: PRDM4
Alias: -
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 24484 bases
Position: chr5:70974100-70998583
Accession: 33296
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000017284	zf-C2H2	PF00096.26	5.5e-20	1	2
ENSBTAP00000017284	zf-C2H2	PF00096.26	5.5e-20	2	2
ENSBTAP00000057348	zf-C2H2	PF00096.26	5.5e-20	1	2
ENSBTAP00000057348	zf-C2H2	PF00096.26	5.5e-20	2	2
ENSBTAP00000017284	zf-met	PF12874.7	0.0001	1	1
ENSBTAP00000057348	zf-met	PF12874.7	0.0001	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000068507	-	4461	-	ENSBTAP00000057348	801 (aa)	XP_010803618	UPI0000582200
ENSBTAT00000017284	-	4281	XM_005206797	ENSBTAP00000017284	801 (aa)	XP_005206854	E1BDK1

Gene Model

Click here to download ENSBTAG00000012999's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000012999's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000012999	PRDM4	51	32.727	ENSBTAG00000021253	PRDM15	62	31.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000012999	PRDM4	100	97.253	ENSG00000110851	PRDM4	100	98.667	Homo_sapiens
ENSBTAG00000012999	PRDM4	99	97.372	ENSAMEG00000016174	PRDM4	99	97.372	Ailuropoda_melanoleuca
ENSBTAG00000012999	PRDM4	99	87.970	ENSAPLG00000009846	PRDM4	99	87.469	Anas_platyrhynchos
ENSBTAG00000012999	PRDM4	100	96.879	ENSANAG00000024800	PRDM4	100	96.879	Aotus_nancymaae
ENSBTAG00000012999	PRDM4	100	96.380	ENSCJAG00000015261	PRDM4	100	96.380	Callithrix_jacchus
ENSBTAG00000012999	PRDM4	100	97.878	ENSCAFG00000001788	PRDM4	100	97.878	Canis_familiaris
ENSBTAG00000012999	PRDM4	100	97.878	ENSCAFG00020004916	PRDM4	100	97.878	Canis_lupus_dingo
ENSBTAG00000012999	PRDM4	100	99.126	ENSCHIG00000019409	PRDM4	100	99.126	Capra_hircus
ENSBTAG00000012999	PRDM4	100	97.129	ENSTSYG00000009248	PRDM4	100	97.129	Carlito_syrichta
ENSBTAG00000012999	PRDM4	99	90.363	ENSCAPG00000013937	PRDM4	99	90.864	Cavia_aperea
ENSBTAG00000012999	PRDM4	99	90.311	ENSCPOG00000022385	PRDM4	100	90.311	Cavia_porcellus
ENSBTAG00000012999	PRDM4	100	97.004	ENSCCAG00000036033	PRDM4	100	97.004	Cebus_capucinus
ENSBTAG00000012999	PRDM4	100	96.879	ENSCATG00000044797	PRDM4	100	96.879	Cercocebus_atys
ENSBTAG00000012999	PRDM4	99	92.413	ENSCLAG00000007545	PRDM4	100	92.413	Chinchilla_lanigera
ENSBTAG00000012999	PRDM4	100	97.129	ENSCSAG00000002896	PRDM4	100	97.129	Chlorocebus_sabaeus
ENSBTAG00000012999	PRDM4	71	97.273	ENSCHOG00000001744	PRDM4	86	97.273	Choloepus_hoffmanni
ENSBTAG00000012999	PRDM4	99	88.331	ENSCPBG00000023187	PRDM4	100	88.331	Chrysemys_picta_bellii
ENSBTAG00000012999	PRDM4	100	97.004	ENSCANG00000021804	PRDM4	100	97.004	Colobus_angolensis_palliatus
ENSBTAG00000012999	PRDM4	99	92.413	ENSCGRG00001015102	-	100	92.164	Cricetulus_griseus_chok1gshd
ENSBTAG00000012999	PRDM4	96	92.387	ENSCGRG00000004044	-	100	92.129	Cricetulus_griseus_crigri
ENSBTAG00000012999	PRDM4	100	96.255	ENSDNOG00000032478	PRDM4	100	96.275	Dasypus_novemcinctus
ENSBTAG00000012999	PRDM4	99	80.928	ENSDORG00000015081	-	100	81.054	Dipodomys_ordii
ENSBTAG00000012999	PRDM4	93	45.938	ENSEBUG00000003775	prdm4	99	45.983	Eptatretus_burgeri
ENSBTAG00000012999	PRDM4	100	97.753	ENSECAG00000015423	PRDM4	100	97.753	Equus_caballus
ENSBTAG00000012999	PRDM4	94	93.209	ENSEEUG00000006569	PRDM4	99	92.943	Erinaceus_europaeus
ENSBTAG00000012999	PRDM4	99	60.632	ENSELUG00000015265	prdm4	99	60.146	Esox_lucius
ENSBTAG00000012999	PRDM4	100	98.002	ENSFCAG00000022478	PRDM4	100	98.002	Felis_catus
ENSBTAG00000012999	PRDM4	99	88.206	ENSFALG00000013342	PRDM4	100	87.829	Ficedula_albicollis
ENSBTAG00000012999	PRDM4	100	87.298	ENSGALG00000012619	PRDM4	100	86.800	Gallus_gallus
ENSBTAG00000012999	PRDM4	99	87.970	ENSGAGG00000002763	PRDM4	95	87.970	Gopherus_agassizii
ENSBTAG00000012999	PRDM4	99	97.125	ENSGGOG00000001244	PRDM4	99	97.125	Gorilla_gorilla
ENSBTAG00000012999	PRDM4	99	94.354	ENSHGLG00000004590	PRDM4	98	93.977	Heterocephalus_glaber_female
ENSBTAG00000012999	PRDM4	99	93.168	ENSHGLG00100007464	PRDM4	100	92.795	Heterocephalus_glaber_male
ENSBTAG00000012999	PRDM4	99	59.341	ENSIPUG00000024162	prdm4	93	61.358	Ictalurus_punctatus
ENSBTAG00000012999	PRDM4	100	96.255	ENSSTOG00000016168	PRDM4	100	96.255	Ictidomys_tridecemlineatus
ENSBTAG00000012999	PRDM4	82	92.742	ENSJJAG00000022448	-	95	92.742	Jaculus_jaculus
ENSBTAG00000012999	PRDM4	99	73.020	ENSLACG00000007452	PRDM4	99	73.267	Latimeria_chalumnae
ENSBTAG00000012999	PRDM4	78	41.689	ENSLOCG00000017092	prdm4	100	53.680	Lepisosteus_oculatus
ENSBTAG00000012999	PRDM4	98	97.208	ENSLAFG00000001483	PRDM4	100	97.208	Loxodonta_africana
ENSBTAG00000012999	PRDM4	100	97.253	ENSMFAG00000041862	PRDM4	100	97.253	Macaca_fascicularis
ENSBTAG00000012999	PRDM4	100	97.253	ENSMMUG00000015550	PRDM4	100	97.253	Macaca_mulatta
ENSBTAG00000012999	PRDM4	100	97.004	ENSMNEG00000032319	PRDM4	100	97.004	Macaca_nemestrina
ENSBTAG00000012999	PRDM4	100	97.129	ENSMLEG00000039607	PRDM4	100	97.129	Mandrillus_leucophaeus
ENSBTAG00000012999	PRDM4	99	80.000	ENSMGAG00000012815	PRDM4	100	79.500	Meleagris_gallopavo
ENSBTAG00000012999	PRDM4	100	96.005	ENSMICG00000007807	PRDM4	100	96.005	Microcebus_murinus
ENSBTAG00000012999	PRDM4	99	93.484	ENSMOCG00000000753	Prdm4	99	93.233	Microtus_ochrogaster
ENSBTAG00000012999	PRDM4	99	94.730	ENSMUSG00000035529	Prdm4	100	94.479	Mus_musculus
ENSBTAG00000012999	PRDM4	99	93.601	MGP_PahariEiJ_G0031398	Prdm4	100	93.647	Mus_pahari
ENSBTAG00000012999	PRDM4	99	94.981	MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	Mus_spretus
ENSBTAG00000012999	PRDM4	99	91.521	ENSMPUG00000012238	PRDM4	99	91.521	Mustela_putorius_furo
ENSBTAG00000012999	PRDM4	99	96.992	ENSMLUG00000000767	PRDM4	99	96.992	Myotis_lucifugus
ENSBTAG00000012999	PRDM4	99	95.609	ENSNGAG00000018627	Prdm4	100	95.609	Nannospalax_galili
ENSBTAG00000012999	PRDM4	100	97.129	ENSNLEG00000006748	PRDM4	100	97.129	Nomascus_leucogenys
ENSBTAG00000012999	PRDM4	89	90.141	ENSMEUG00000004495	PRDM4	89	90.141	Notamacropus_eugenii
ENSBTAG00000012999	PRDM4	88	95.536	ENSOPRG00000010192	PRDM4	89	95.536	Ochotona_princeps
ENSBTAG00000012999	PRDM4	99	90.125	ENSODEG00000014750	PRDM4	99	89.750	Octodon_degus
ENSBTAG00000012999	PRDM4	100	91.635	ENSOANG00000005526	PRDM4	100	91.635	Ornithorhynchus_anatinus
ENSBTAG00000012999	PRDM4	93	97.282	ENSOCUG00000012859	PRDM4	96	97.282	Oryctolagus_cuniculus
ENSBTAG00000012999	PRDM4	99	97.365	ENSOGAG00000011945	PRDM4	100	97.365	Otolemur_garnettii
ENSBTAG00000012999	PRDM4	100	98.627	ENSOARG00000017955	PRDM4	100	98.627	Ovis_aries
ENSBTAG00000012999	PRDM4	100	97.253	ENSPPAG00000038438	PRDM4	100	97.253	Pan_paniscus
ENSBTAG00000012999	PRDM4	100	98.002	ENSPPRG00000004144	PRDM4	100	98.002	Panthera_pardus
ENSBTAG00000012999	PRDM4	100	98.002	ENSPTIG00000005847	PRDM4	100	98.002	Panthera_tigris_altaica
ENSBTAG00000012999	PRDM4	100	97.253	ENSPTRG00000005400	PRDM4	100	97.253	Pan_troglodytes
ENSBTAG00000012999	PRDM4	100	97.253	ENSPANG00000022084	PRDM4	100	97.253	Papio_anubis
ENSBTAG00000012999	PRDM4	99	60.333	ENSPKIG00000000875	prdm4	99	60.214	Paramormyrops_kingsleyae
ENSBTAG00000012999	PRDM4	91	82.510	ENSPSIG00000012066	PRDM4	100	82.510	Pelodiscus_sinensis
ENSBTAG00000012999	PRDM4	99	95.107	ENSPEMG00000014598	Prdm4	100	95.107	Peromyscus_maniculatus_bairdii
ENSBTAG00000012999	PRDM4	100	89.428	ENSPCIG00000009471	PRDM4	100	89.428	Phascolarctos_cinereus
ENSBTAG00000012999	PRDM4	100	97.129	ENSPPYG00000004913	PRDM4	100	97.129	Pongo_abelii
ENSBTAG00000012999	PRDM4	83	97.917	ENSPCAG00000009987	PRDM4	83	97.917	Procavia_capensis
ENSBTAG00000012999	PRDM4	100	95.880	ENSPCOG00000021060	PRDM4	100	95.880	Propithecus_coquereli
ENSBTAG00000012999	PRDM4	100	96.883	ENSPVAG00000001596	PRDM4	100	96.883	Pteropus_vampyrus
ENSBTAG00000012999	PRDM4	99	94.236	ENSRNOG00000004962	Prdm4	100	93.860	Rattus_norvegicus
ENSBTAG00000012999	PRDM4	100	97.004	ENSRBIG00000035488	PRDM4	100	97.004	Rhinopithecus_bieti
ENSBTAG00000012999	PRDM4	100	97.129	ENSRROG00000012779	PRDM4	100	97.129	Rhinopithecus_roxellana
ENSBTAG00000012999	PRDM4	100	96.879	ENSSBOG00000000403	PRDM4	100	96.879	Saimiri_boliviensis_boliviensis
ENSBTAG00000012999	PRDM4	99	64.039	ENSSFOG00015023358	prdm4	99	63.379	Scleropages_formosus
ENSBTAG00000012999	PRDM4	100	98.377	ENSSSCG00000000160	PRDM4	100	98.377	Sus_scrofa
ENSBTAG00000012999	PRDM4	99	88.346	ENSTGUG00000010962	-	99	87.970	Taeniopygia_guttata
ENSBTAG00000012999	PRDM4	73	89.761	ENSTBEG00000001732	PRDM4	84	89.761	Tupaia_belangeri
ENSBTAG00000012999	PRDM4	100	97.753	ENSTTRG00000011056	PRDM4	100	97.753	Tursiops_truncatus
ENSBTAG00000012999	PRDM4	100	97.753	ENSUAMG00000022796	PRDM4	100	97.753	Ursus_americanus
ENSBTAG00000012999	PRDM4	100	97.753	ENSUMAG00000017231	PRDM4	100	97.753	Ursus_maritimus
ENSBTAG00000012999	PRDM4	99	98.118	ENSVPAG00000002215	PRDM4	100	98.118	Vicugna_pacos
ENSBTAG00000012999	PRDM4	100	97.878	ENSVVUG00000023397	PRDM4	100	97.878	Vulpes_vulpes