EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000013227 (Gene tree)
Gene ID: 520631
Gene Symbol: SNAI2
Alias: -
Full Name: Bos taurus snail family transcriptional repressor 2 (SNAI2)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 3602 bases
Position: chr14:19941415-19945016
Accession: NM_001034538
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000017600	zf-C2H2	PF00096.26	2.9e-25	1	5
ENSBTAP00000017600	zf-C2H2	PF00096.26	2.9e-25	2	5
ENSBTAP00000017600	zf-C2H2	PF00096.26	2.9e-25	3	5
ENSBTAP00000017600	zf-C2H2	PF00096.26	2.9e-25	4	5
ENSBTAP00000017600	zf-C2H2	PF00096.26	2.9e-25	5	5
ENSBTAP00000017600	zf-met	PF12874.7	3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000017600	-	1988	-	ENSBTAP00000017600	268 (aa)	-	Q3MHQ4

Gene Model

Click here to download ENSBTAG00000013227's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta04390	Hippo signaling pathway	KEGG
bta04520	Adherens junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000013227's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000013227	SNAI2	71	41.509	ENSBTAG00000054022	ZNF250	74	38.060
ENSBTAG00000013227	SNAI2	54	45.946	ENSBTAG00000016191	ZNF32	73	45.946
ENSBTAG00000013227	SNAI2	51	42.857	ENSBTAG00000053591	-	79	42.857
ENSBTAG00000013227	SNAI2	54	36.879	ENSBTAG00000049339	-	80	36.879
ENSBTAG00000013227	SNAI2	99	52.536	ENSBTAG00000014554	SNAI1	98	52.899
ENSBTAG00000013227	SNAI2	50	42.336	ENSBTAG00000049158	ZNF596	67	42.336
ENSBTAG00000013227	SNAI2	52	37.179	ENSBTAG00000002291	ZBTB41	56	37.500
ENSBTAG00000013227	SNAI2	55	42.537	ENSBTAG00000016721	-	99	42.537
ENSBTAG00000013227	SNAI2	60	40.876	ENSBTAG00000012111	PRDM5	57	40.876
ENSBTAG00000013227	SNAI2	57	37.500	ENSBTAG00000038322	-	75	38.060
ENSBTAG00000013227	SNAI2	99	46.939	ENSBTAG00000017528	SNAI3	99	47.619

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000013227	SNAI2	100	93.657	ENSG00000019549	SNAI2	100	93.657	Homo_sapiens
ENSBTAG00000013227	SNAI2	99	50.685	ENSG00000185669	SNAI3	99	50.345	Homo_sapiens
ENSBTAG00000013227	SNAI2	100	94.403	ENSAMEG00000009606	SNAI2	100	94.403	Ailuropoda_melanoleuca
ENSBTAG00000013227	SNAI2	100	93.657	ENSANAG00000021163	SNAI2	100	93.657	Aotus_nancymaae
ENSBTAG00000013227	SNAI2	99	49.320	ENSANAG00000032748	SNAI3	99	49.320	Aotus_nancymaae
ENSBTAG00000013227	SNAI2	100	93.657	ENSCJAG00000013499	SNAI2	100	93.657	Callithrix_jacchus
ENSBTAG00000013227	SNAI2	99	49.135	ENSCAFG00000029458	SNAI3	99	48.299	Canis_familiaris
ENSBTAG00000013227	SNAI2	100	93.657	ENSCAFG00000006638	SNAI2	100	93.657	Canis_familiaris
ENSBTAG00000013227	SNAI2	100	93.657	ENSCAFG00020015384	SNAI2	100	93.657	Canis_lupus_dingo
ENSBTAG00000013227	SNAI2	99	49.481	ENSCAFG00020004719	SNAI3	99	48.639	Canis_lupus_dingo
ENSBTAG00000013227	SNAI2	99	48.123	ENSCHIG00000018087	SNAI3	99	47.099	Capra_hircus
ENSBTAG00000013227	SNAI2	100	99.627	ENSCHIG00000024410	SNAI2	100	99.627	Capra_hircus
ENSBTAG00000013227	SNAI2	90	93.776	ENSTSYG00000030892	SNAI2	90	93.776	Carlito_syrichta
ENSBTAG00000013227	SNAI2	53	72.000	ENSTSYG00000025594	SNAI3	52	72.000	Carlito_syrichta
ENSBTAG00000013227	SNAI2	83	92.825	ENSCAPG00000013078	SNAI2	100	92.825	Cavia_aperea
ENSBTAG00000013227	SNAI2	100	93.657	ENSCCAG00000024100	SNAI2	100	93.657	Cebus_capucinus
ENSBTAG00000013227	SNAI2	100	93.657	ENSCATG00000028656	SNAI2	100	93.657	Cercocebus_atys
ENSBTAG00000013227	SNAI2	99	48.534	ENSCATG00000031714	SNAI3	99	48.534	Cercocebus_atys
ENSBTAG00000013227	SNAI2	100	94.030	ENSCLAG00000011797	SNAI2	100	94.030	Chinchilla_lanigera
ENSBTAG00000013227	SNAI2	100	93.657	ENSCSAG00000014787	SNAI2	100	93.657	Chlorocebus_sabaeus
ENSBTAG00000013227	SNAI2	100	89.925	ENSCPBG00000020255	SNAI2	100	89.925	Chrysemys_picta_bellii
ENSBTAG00000013227	SNAI2	99	51.701	ENSCPBG00000023474	SNAI3	99	51.701	Chrysemys_picta_bellii
ENSBTAG00000013227	SNAI2	50	66.418	ENSCSAVG00000009819	-	81	58.599	Ciona_savignyi
ENSBTAG00000013227	SNAI2	100	93.657	ENSCANG00000029656	SNAI2	100	93.657	Colobus_angolensis_palliatus
ENSBTAG00000013227	SNAI2	99	47.569	ENSCGRG00001011389	Snai3	99	47.203	Cricetulus_griseus_chok1gshd
ENSBTAG00000013227	SNAI2	100	92.164	ENSCGRG00001013674	Snai2	100	92.164	Cricetulus_griseus_chok1gshd
ENSBTAG00000013227	SNAI2	100	92.164	ENSCGRG00000012119	Snai2	100	92.164	Cricetulus_griseus_crigri
ENSBTAG00000013227	SNAI2	99	47.569	ENSCGRG00000014932	Snai3	99	47.203	Cricetulus_griseus_crigri
ENSBTAG00000013227	SNAI2	78	35.426	ENSDNOG00000035204	-	100	34.529	Dasypus_novemcinctus
ENSBTAG00000013227	SNAI2	100	90.299	ENSDORG00000029620	Snai2	100	90.299	Dipodomys_ordii
ENSBTAG00000013227	SNAI2	99	48.485	ENSECAG00000012131	SNAI3	99	49.310	Equus_caballus
ENSBTAG00000013227	SNAI2	100	79.478	ENSELUG00000021795	SNAI2	79	78.358	Esox_lucius
ENSBTAG00000013227	SNAI2	99	54.965	ENSELUG00000018742	-	99	56.098	Esox_lucius
ENSBTAG00000013227	SNAI2	99	49.104	ENSFCAG00000043885	SNAI3	99	48.375	Felis_catus
ENSBTAG00000013227	SNAI2	89	64.286	ENSFALG00000012974	-	98	65.966	Ficedula_albicollis
ENSBTAG00000013227	SNAI2	100	93.657	ENSFDAG00000016958	SNAI2	100	93.657	Fukomys_damarensis
ENSBTAG00000013227	SNAI2	99	53.425	ENSGAGG00000023571	SNAI3	99	52.740	Gopherus_agassizii
ENSBTAG00000013227	SNAI2	100	89.925	ENSGAGG00000000426	SNAI2	100	89.925	Gopherus_agassizii
ENSBTAG00000013227	SNAI2	100	93.657	ENSGGOG00000000959	SNAI2	100	93.657	Gorilla_gorilla
ENSBTAG00000013227	SNAI2	100	74.349	ENSHCOG00000019435	SNAI2	100	74.349	Hippocampus_comes
ENSBTAG00000013227	SNAI2	100	69.030	ENSIPUG00000000131	snai2	100	68.657	Ictalurus_punctatus
ENSBTAG00000013227	SNAI2	100	93.284	ENSSTOG00000028743	SNAI2	100	93.284	Ictidomys_tridecemlineatus
ENSBTAG00000013227	SNAI2	99	48.311	ENSJJAG00000019934	Snai3	99	47.973	Jaculus_jaculus
ENSBTAG00000013227	SNAI2	100	86.194	ENSLOCG00000005992	SNAI2	100	86.194	Lepisosteus_oculatus
ENSBTAG00000013227	SNAI2	52	86.429	ENSLOCG00000004887	SNAI3	92	83.444	Lepisosteus_oculatus
ENSBTAG00000013227	SNAI2	99	57.565	ENSLAFG00000005117	SNAI3	99	57.565	Loxodonta_africana
ENSBTAG00000013227	SNAI2	100	92.164	ENSLAFG00000009299	SNAI2	100	92.164	Loxodonta_africana
ENSBTAG00000013227	SNAI2	100	93.657	ENSMFAG00000046061	SNAI2	100	93.657	Macaca_fascicularis
ENSBTAG00000013227	SNAI2	99	51.020	ENSMFAG00000032064	SNAI3	99	51.020	Macaca_fascicularis
ENSBTAG00000013227	SNAI2	100	93.657	ENSMMUG00000016195	SNAI2	100	93.657	Macaca_mulatta
ENSBTAG00000013227	SNAI2	99	51.020	ENSMMUG00000008716	SNAI3	99	51.020	Macaca_mulatta
ENSBTAG00000013227	SNAI2	99	51.020	ENSMNEG00000045515	SNAI3	99	49.505	Macaca_nemestrina
ENSBTAG00000013227	SNAI2	100	93.657	ENSMNEG00000034216	SNAI2	100	93.657	Macaca_nemestrina
ENSBTAG00000013227	SNAI2	100	93.657	ENSMLEG00000034407	SNAI2	100	93.657	Mandrillus_leucophaeus
ENSBTAG00000013227	SNAI2	100	92.537	ENSMAUG00000008119	Snai2	100	92.537	Mesocricetus_auratus
ENSBTAG00000013227	SNAI2	99	47.552	ENSMOCG00000003536	Snai3	99	47.018	Microtus_ochrogaster
ENSBTAG00000013227	SNAI2	100	91.791	ENSMOCG00000006622	Snai2	100	91.791	Microtus_ochrogaster
ENSBTAG00000013227	SNAI2	100	91.418	ENSMODG00000010173	SNAI2	100	91.418	Monodelphis_domestica
ENSBTAG00000013227	SNAI2	100	91.822	MGP_CAROLIEiJ_G0020483	Snai2	100	91.822	Mus_caroli
ENSBTAG00000013227	SNAI2	100	91.450	ENSMUSG00000022676	Snai2	100	91.450	Mus_musculus
ENSBTAG00000013227	SNAI2	100	91.822	MGP_PahariEiJ_G0016188	Snai2	100	91.822	Mus_pahari
ENSBTAG00000013227	SNAI2	99	47.603	MGP_PahariEiJ_G0023260	Snai3	99	46.552	Mus_pahari
ENSBTAG00000013227	SNAI2	100	91.450	MGP_SPRETEiJ_G0021379	Snai2	100	91.450	Mus_spretus
ENSBTAG00000013227	SNAI2	99	50.175	ENSMPUG00000008104	SNAI3	99	50.175	Mustela_putorius_furo
ENSBTAG00000013227	SNAI2	100	94.403	ENSMPUG00000010793	SNAI2	100	94.403	Mustela_putorius_furo
ENSBTAG00000013227	SNAI2	100	92.910	ENSMLUG00000001086	SNAI2	100	92.910	Myotis_lucifugus
ENSBTAG00000013227	SNAI2	99	46.801	ENSNGAG00000023039	Snai3	99	46.078	Nannospalax_galili
ENSBTAG00000013227	SNAI2	99	50.685	ENSNLEG00000000595	SNAI3	99	50.685	Nomascus_leucogenys
ENSBTAG00000013227	SNAI2	100	92.910	ENSNLEG00000013421	SNAI2	100	92.910	Nomascus_leucogenys
ENSBTAG00000013227	SNAI2	97	91.571	ENSMEUG00000009510	SNAI2	100	91.571	Notamacropus_eugenii
ENSBTAG00000013227	SNAI2	100	90.672	ENSOANG00000007267	SNAI2	100	90.672	Ornithorhynchus_anatinus
ENSBTAG00000013227	SNAI2	99	47.603	ENSOGAG00000000419	SNAI3	99	48.288	Otolemur_garnettii
ENSBTAG00000013227	SNAI2	100	99.627	ENSOARG00000013030	SNAI2	100	99.627	Ovis_aries
ENSBTAG00000013227	SNAI2	100	93.657	ENSPPAG00000015662	SNAI2	100	93.657	Pan_paniscus
ENSBTAG00000013227	SNAI2	99	50.000	ENSPPAG00000043301	SNAI3	99	46.254	Pan_paniscus
ENSBTAG00000013227	SNAI2	100	94.030	ENSPPRG00000012562	-	100	94.030	Panthera_pardus
ENSBTAG00000013227	SNAI2	99	47.464	ENSPPRG00000008511	SNAI3	99	49.097	Panthera_pardus
ENSBTAG00000013227	SNAI2	90	93.388	ENSPTIG00000007593	SNAI2	77	93.388	Panthera_tigris_altaica
ENSBTAG00000013227	SNAI2	99	50.340	ENSPTRG00000008460	SNAI3	99	46.302	Pan_troglodytes
ENSBTAG00000013227	SNAI2	100	93.657	ENSPTRG00000020235	SNAI2	100	93.657	Pan_troglodytes
ENSBTAG00000013227	SNAI2	99	48.860	ENSPANG00000000509	SNAI3	99	48.860	Papio_anubis
ENSBTAG00000013227	SNAI2	100	93.657	ENSPANG00000017540	SNAI2	100	93.657	Papio_anubis
ENSBTAG00000013227	SNAI2	100	82.836	ENSPKIG00000002254	SNAI2	100	82.836	Paramormyrops_kingsleyae
ENSBTAG00000013227	SNAI2	99	55.017	ENSPKIG00000007872	SNAI3	99	55.017	Paramormyrops_kingsleyae
ENSBTAG00000013227	SNAI2	53	81.690	ENSPSIG00000004262	SNAI3	56	81.690	Pelodiscus_sinensis
ENSBTAG00000013227	SNAI2	100	89.925	ENSPSIG00000016395	SNAI2	100	89.925	Pelodiscus_sinensis
ENSBTAG00000013227	SNAI2	100	77.239	ENSPMGG00000013179	SNAI2	100	75.746	Periophthalmus_magnuspinnatus
ENSBTAG00000013227	SNAI2	100	91.791	ENSPEMG00000011739	Snai2	100	91.791	Peromyscus_maniculatus_bairdii
ENSBTAG00000013227	SNAI2	100	91.791	ENSPCIG00000025156	SNAI2	100	91.791	Phascolarctos_cinereus
ENSBTAG00000013227	SNAI2	90	78.099	ENSPREG00000008528	SNAI2	86	76.446	Poecilia_reticulata
ENSBTAG00000013227	SNAI2	100	93.657	ENSPPYG00000018578	SNAI2	100	93.657	Pongo_abelii
ENSBTAG00000013227	SNAI2	99	51.020	ENSPPYG00000007643	SNAI3	99	46.624	Pongo_abelii
ENSBTAG00000013227	SNAI2	100	93.657	ENSPCOG00000015656	SNAI2	100	93.657	Propithecus_coquereli
ENSBTAG00000013227	SNAI2	100	93.284	ENSPVAG00000009457	SNAI2	100	93.284	Pteropus_vampyrus
ENSBTAG00000013227	SNAI2	99	47.241	ENSRNOG00000013586	Snai3	99	47.222	Rattus_norvegicus
ENSBTAG00000013227	SNAI2	100	93.657	ENSRBIG00000041133	SNAI2	100	93.657	Rhinopithecus_bieti
ENSBTAG00000013227	SNAI2	99	50.680	ENSRBIG00000025770	SNAI3	99	50.165	Rhinopithecus_bieti
ENSBTAG00000013227	SNAI2	100	93.657	ENSRROG00000032273	SNAI2	100	93.657	Rhinopithecus_roxellana
ENSBTAG00000013227	SNAI2	99	51.361	ENSRROG00000032757	SNAI3	99	49.175	Rhinopithecus_roxellana
ENSBTAG00000013227	SNAI2	100	93.657	ENSSBOG00000035774	SNAI2	100	93.657	Saimiri_boliviensis_boliviensis
ENSBTAG00000013227	SNAI2	100	91.791	ENSSHAG00000004205	SNAI2	100	91.791	Sarcophilus_harrisii
ENSBTAG00000013227	SNAI2	99	51.299	ENSSFOG00015016115	snai3	93	51.815	Scleropages_formosus
ENSBTAG00000013227	SNAI2	100	82.963	ENSSFOG00015018025	SNAI2	100	82.963	Scleropages_formosus
ENSBTAG00000013227	SNAI2	100	89.179	ENSSPUG00000005427	-	100	89.179	Sphenodon_punctatus
ENSBTAG00000013227	SNAI2	100	93.657	ENSSSCG00000039568	SNAI2	100	93.657	Sus_scrofa
ENSBTAG00000013227	SNAI2	99	46.875	ENSTTRG00000006262	SNAI3	99	47.059	Tursiops_truncatus
ENSBTAG00000013227	SNAI2	99	50.865	ENSUAMG00000020030	SNAI3	99	50.865	Ursus_americanus
ENSBTAG00000013227	SNAI2	86	94.348	ENSUAMG00000014942	SNAI2	100	94.348	Ursus_americanus
ENSBTAG00000013227	SNAI2	98	93.916	ENSUMAG00000006525	SNAI2	100	93.916	Ursus_maritimus
ENSBTAG00000013227	SNAI2	100	94.030	ENSVVUG00000017625	SNAI2	100	94.030	Vulpes_vulpes
ENSBTAG00000013227	SNAI2	99	49.658	ENSVVUG00000003233	SNAI3	99	49.315	Vulpes_vulpes
ENSBTAG00000013227	SNAI2	100	87.313	ENSXETG00000024006	snai2	100	87.313	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	-	IEA	Component
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	IEA	Function
GO:0001649	osteoblast differentiation	-	IEA	Process
GO:0003198	epithelial to mesenchymal transition involved in endocardial cushion formation	-	IEA	Process
GO:0003273	cell migration involved in endocardial cushion formation	-	IEA	Process
GO:0003682	chromatin binding	-	IEA	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006933	negative regulation of cell adhesion involved in substrate-bound cell migration	-	IEA	Process
GO:0007219	Notch signaling pathway	-	IEA	Process
GO:0007605	sensory perception of sound	-	IEA	Process
GO:0010839	negative regulation of keratinocyte proliferation	-	IEA	Process
GO:0010957	negative regulation of vitamin D biosynthetic process	-	IEA	Process
GO:0014032	neural crest cell development	-	IEA	Process
GO:0030335	positive regulation of cell migration	-	IEA	Process
GO:0032331	negative regulation of chondrocyte differentiation	-	IEA	Process
GO:0032642	regulation of chemokine production	-	IEA	Process
GO:0035066	positive regulation of histone acetylation	-	IEA	Process
GO:0035921	desmosome disassembly	-	IEA	Process
GO:0043473	pigmentation	-	IEA	Process
GO:0043518	negative regulation of DNA damage response, signal transduction by p53 class mediator	-	IEA	Process
GO:0045600	positive regulation of fat cell differentiation	-	IEA	Process
GO:0045667	regulation of osteoblast differentiation	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0050872	white fat cell differentiation	-	IEA	Process
GO:0060021	roof of mouth development	-	IEA	Process
GO:0060429	epithelium development	-	IEA	Process
GO:0060536	cartilage morphogenesis	-	IEA	Process
GO:0060693	regulation of branching involved in salivary gland morphogenesis	-	IEA	Process
GO:0070563	negative regulation of vitamin D receptor signaling pathway	-	IEA	Process
GO:0070888	E-box binding	-	IEA	Function
GO:0071364	cellular response to epidermal growth factor stimulus	-	IEA	Process
GO:0071479	cellular response to ionizing radiation	-	IEA	Process
GO:0090090	negative regulation of canonical Wnt signaling pathway	-	IEA	Process
GO:1900387	negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter	-	IEA	Process
GO:1902230	negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage	-	IEA	Process
GO:2000647	negative regulation of stem cell proliferation	-	IEA	Process
GO:2000810	regulation of bicellular tight junction assembly	-	IEA	Process
GO:2000811	negative regulation of anoikis	-	IEA	Process
GO:2001240	negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	-	IEA	Process