EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000013302 (Gene tree)
Gene ID: 533850
Gene Symbol: R3HDM1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 162875 bases
Position: chr2:61636892-61799766
Accession: 533850
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000017695	R3H	PF01424.22	7.2e-11	1	1
ENSBTAP00000067328	R3H	PF01424.22	7.5e-11	1	1
ENSBTAP00000058941	R3H	PF01424.22	7.9e-11	1	1
ENSBTAP00000063881	R3H	PF01424.22	3.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000087430	R3HDM1-204	3884	-	ENSBTAP00000067328	1097 (aa)	-	-
ENSBTAT00000085926	R3HDM1-202	4074	-	ENSBTAP00000063881	1017 (aa)	-	-
ENSBTAT00000017695	R3HDM1-201	4134	XM_024980906	ENSBTAP00000017695	1037 (aa)	XP_024836674	E1BDH6
ENSBTAT00000074294	R3HDM1-203	4031	-	ENSBTAP00000058941	1132 (aa)	XP_024836629	UPI000D538414

Gene Model

Click here to download ENSBTAG00000013302's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000013302's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000013302	R3HDM1	65	56.818	ENSBTAG00000007732	ARPP21	95	49.157
ENSBTAG00000013302	R3HDM1	84	64.423	ENSBTAG00000018361	R3HDM2	96	57.702

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000013302	R3HDM1	100	91.469	ENSG00000048991	R3HDM1	100	92.508	Homo_sapiens
ENSBTAG00000013302	R3HDM1	89	49.908	ENSAPOG00000020850	r3hdm1	97	49.582	Acanthochromis_polyacanthus
ENSBTAG00000013302	R3HDM1	100	92.964	ENSAMEG00000014886	R3HDM1	100	92.700	Ailuropoda_melanoleuca
ENSBTAG00000013302	R3HDM1	89	49.077	ENSAOCG00000005192	r3hdm1	99	48.885	Amphiprion_ocellaris
ENSBTAG00000013302	R3HDM1	89	46.642	ENSAPEG00000016108	r3hdm1	99	47.677	Amphiprion_percula
ENSBTAG00000013302	R3HDM1	89	45.971	ENSATEG00000000232	r3hdm1	99	47.465	Anabas_testudineus
ENSBTAG00000013302	R3HDM1	100	77.337	ENSAPLG00000015231	R3HDM1	100	76.984	Anas_platyrhynchos
ENSBTAG00000013302	R3HDM1	100	80.334	ENSACAG00000001676	R3HDM1	100	80.597	Anolis_carolinensis
ENSBTAG00000013302	R3HDM1	100	91.652	ENSANAG00000035334	R3HDM1	100	93.171	Aotus_nancymaae
ENSBTAG00000013302	R3HDM1	89	46.860	ENSACLG00000027282	r3hdm1	99	48.020	Astatotilapia_calliptera
ENSBTAG00000013302	R3HDM1	93	72.662	ENSAMXG00000012861	R3HDM1	100	72.596	Astyanax_mexicanus
ENSBTAG00000013302	R3HDM1	52	53.435	ENSAMXG00000020587	arpp21	62	58.943	Astyanax_mexicanus
ENSBTAG00000013302	R3HDM1	100	55.527	ENSAMXG00000003536	r3hdm1	100	61.772	Astyanax_mexicanus
ENSBTAG00000013302	R3HDM1	100	91.373	ENSCJAG00000011718	R3HDM1	100	92.985	Callithrix_jacchus
ENSBTAG00000013302	R3HDM1	100	93.228	ENSCAFG00000005075	R3HDM1	100	92.964	Canis_familiaris
ENSBTAG00000013302	R3HDM1	100	96.042	ENSCAFG00020016119	R3HDM1	100	96.042	Canis_lupus_dingo
ENSBTAG00000013302	R3HDM1	100	99.293	ENSCHIG00000020851	R3HDM1	100	99.293	Capra_hircus
ENSBTAG00000013302	R3HDM1	100	92.186	ENSCPOG00000012784	R3HDM1	100	92.098	Cavia_porcellus
ENSBTAG00000013302	R3HDM1	100	91.293	ENSCCAG00000027199	R3HDM1	100	93.322	Cebus_capucinus
ENSBTAG00000013302	R3HDM1	100	94.019	ENSCATG00000023642	R3HDM1	100	93.404	Cercocebus_atys
ENSBTAG00000013302	R3HDM1	100	91.484	ENSCLAG00000007962	R3HDM1	100	91.484	Chinchilla_lanigera
ENSBTAG00000013302	R3HDM1	100	93.931	ENSCSAG00000016356	R3HDM1	100	93.316	Chlorocebus_sabaeus
ENSBTAG00000013302	R3HDM1	83	87.023	ENSCHOG00000013638	R3HDM1	91	79.528	Choloepus_hoffmanni
ENSBTAG00000013302	R3HDM1	92	78.721	ENSCPBG00000009645	R3HDM1	100	90.775	Chrysemys_picta_bellii
ENSBTAG00000013302	R3HDM1	100	91.388	ENSCANG00000034748	R3HDM1	100	92.195	Colobus_angolensis_palliatus
ENSBTAG00000013302	R3HDM1	99	91.182	ENSCGRG00001012357	R3hdm1	97	91.093	Cricetulus_griseus_chok1gshd
ENSBTAG00000013302	R3HDM1	100	91.125	ENSCGRG00000012080	R3hdm1	100	91.037	Cricetulus_griseus_crigri
ENSBTAG00000013302	R3HDM1	89	42.974	ENSCSEG00000008944	r3hdm1	93	51.875	Cynoglossus_semilaevis
ENSBTAG00000013302	R3HDM1	89	48.928	ENSCVAG00000007582	r3hdm1	99	48.502	Cyprinodon_variegatus
ENSBTAG00000013302	R3HDM1	65	37.995	ENSDARG00000061081	arpp21	95	36.039	Danio_rerio
ENSBTAG00000013302	R3HDM1	100	87.982	ENSDNOG00000000771	R3HDM1	100	87.544	Dasypus_novemcinctus
ENSBTAG00000013302	R3HDM1	100	80.583	ENSETEG00000013606	R3HDM1	100	80.229	Echinops_telfairi
ENSBTAG00000013302	R3HDM1	62	40.704	ENSEBUG00000014746	arpp21	97	44.089	Eptatretus_burgeri
ENSBTAG00000013302	R3HDM1	100	95.852	ENSEASG00005007392	R3HDM1	100	95.852	Equus_asinus_asinus
ENSBTAG00000013302	R3HDM1	100	95.683	ENSECAG00000019114	R3HDM1	100	95.242	Equus_caballus
ENSBTAG00000013302	R3HDM1	86	88.839	ENSEEUG00000012589	R3HDM1	86	88.839	Erinaceus_europaeus
ENSBTAG00000013302	R3HDM1	92	56.281	ENSELUG00000004909	R3HDM1	99	53.958	Esox_lucius
ENSBTAG00000013302	R3HDM1	91	51.111	ENSELUG00000014413	r3hdm1	100	50.219	Esox_lucius
ENSBTAG00000013302	R3HDM1	100	96.293	ENSFCAG00000027113	R3HDM1	100	97.537	Felis_catus
ENSBTAG00000013302	R3HDM1	91	67.027	ENSFALG00000013731	R3HDM1	93	69.910	Ficedula_albicollis
ENSBTAG00000013302	R3HDM1	100	91.484	ENSFDAG00000016478	R3HDM1	99	94.465	Fukomys_damarensis
ENSBTAG00000013302	R3HDM1	89	48.609	ENSFHEG00000018713	r3hdm1	100	47.968	Fundulus_heteroclitus
ENSBTAG00000013302	R3HDM1	59	69.348	ENSGMOG00000006042	-	74	68.319	Gadus_morhua
ENSBTAG00000013302	R3HDM1	87	75.122	ENSGALG00000012246	R3HDM1	99	89.931	Gallus_gallus
ENSBTAG00000013302	R3HDM1	89	45.833	ENSGAFG00000006203	r3hdm1	99	47.609	Gambusia_affinis
ENSBTAG00000013302	R3HDM1	87	49.390	ENSGACG00000014925	r3hdm1	99	49.762	Gasterosteus_aculeatus
ENSBTAG00000013302	R3HDM1	100	78.383	ENSGAGG00000007840	R3HDM1	100	77.944	Gopherus_agassizii
ENSBTAG00000013302	R3HDM1	100	91.117	ENSGGOG00000008156	R3HDM1	100	91.857	Gorilla_gorilla
ENSBTAG00000013302	R3HDM1	100	92.247	ENSHGLG00000015718	R3HDM1	99	94.649	Heterocephalus_glaber_female
ENSBTAG00000013302	R3HDM1	100	91.982	ENSHGLG00100003184	-	100	91.542	Heterocephalus_glaber_male
ENSBTAG00000013302	R3HDM1	100	71.402	ENSHGLG00100015374	-	100	71.591	Heterocephalus_glaber_male
ENSBTAG00000013302	R3HDM1	89	41.806	ENSHCOG00000013366	r3hdm1	88	59.500	Hippocampus_comes
ENSBTAG00000013302	R3HDM1	86	66.566	ENSIPUG00000013629	r3hdm1	95	68.125	Ictalurus_punctatus
ENSBTAG00000013302	R3HDM1	82	66.348	ENSIPUG00000001676	R3HDM1	99	66.268	Ictalurus_punctatus
ENSBTAG00000013302	R3HDM1	100	93.931	ENSSTOG00000007572	R3HDM1	99	95.756	Ictidomys_tridecemlineatus
ENSBTAG00000013302	R3HDM1	95	73.689	ENSLACG00000005334	R3HDM1	100	79.177	Latimeria_chalumnae
ENSBTAG00000013302	R3HDM1	100	67.100	ENSLOCG00000001641	r3hdm1	100	66.580	Lepisosteus_oculatus
ENSBTAG00000013302	R3HDM1	100	94.454	ENSLAFG00000009065	R3HDM1	100	94.366	Loxodonta_africana
ENSBTAG00000013302	R3HDM1	100	91.381	ENSMFAG00000030331	R3HDM1	100	95.567	Macaca_fascicularis
ENSBTAG00000013302	R3HDM1	100	91.205	ENSMMUG00000009844	R3HDM1	100	92.182	Macaca_mulatta
ENSBTAG00000013302	R3HDM1	100	91.205	ENSMNEG00000027793	R3HDM1	100	95.567	Macaca_nemestrina
ENSBTAG00000013302	R3HDM1	100	91.469	ENSMLEG00000043189	R3HDM1	100	91.436	Mandrillus_leucophaeus
ENSBTAG00000013302	R3HDM1	89	49.445	ENSMAMG00000004532	r3hdm1	99	49.162	Mastacembelus_armatus
ENSBTAG00000013302	R3HDM1	89	48.706	ENSMZEG00005003157	r3hdm1	93	56.813	Maylandia_zebra
ENSBTAG00000013302	R3HDM1	100	76.585	ENSMGAG00000012461	R3HDM1	100	76.496	Meleagris_gallopavo
ENSBTAG00000013302	R3HDM1	100	90.535	ENSMAUG00000010315	R3hdm1	100	90.272	Mesocricetus_auratus
ENSBTAG00000013302	R3HDM1	95	78.471	ENSMICG00000042655	-	100	91.160	Microcebus_murinus
ENSBTAG00000013302	R3HDM1	100	90.957	ENSMICG00000005900	-	100	91.436	Microcebus_murinus
ENSBTAG00000013302	R3HDM1	90	80.916	ENSMODG00000000923	R3HDM1	97	80.630	Monodelphis_domestica
ENSBTAG00000013302	R3HDM1	99	46.700	ENSMALG00000009000	r3hdm1	100	46.683	Monopterus_albus
ENSBTAG00000013302	R3HDM1	100	89.965	MGP_CAROLIEiJ_G0014543	R3hdm1	100	92.887	Mus_caroli
ENSBTAG00000013302	R3HDM1	100	89.965	ENSMUSG00000056211	R3hdm1	100	92.887	Mus_musculus
ENSBTAG00000013302	R3HDM1	100	89.877	MGP_PahariEiJ_G0027779	R3hdm1	100	92.887	Mus_pahari
ENSBTAG00000013302	R3HDM1	100	90.141	MGP_SPRETEiJ_G0015350	R3hdm1	100	92.887	Mus_spretus
ENSBTAG00000013302	R3HDM1	100	93.216	ENSMPUG00000002412	R3HDM1	100	93.392	Mustela_putorius_furo
ENSBTAG00000013302	R3HDM1	100	91.404	ENSMLUG00000013824	R3HDM1	100	91.140	Myotis_lucifugus
ENSBTAG00000013302	R3HDM1	100	91.293	ENSNLEG00000008622	R3HDM1	100	92.671	Nomascus_leucogenys
ENSBTAG00000013302	R3HDM1	89	70.257	ENSMEUG00000011784	R3HDM1	100	69.960	Notamacropus_eugenii
ENSBTAG00000013302	R3HDM1	100	91.293	ENSODEG00000008607	R3HDM1	100	90.765	Octodon_degus
ENSBTAG00000013302	R3HDM1	95	46.175	ENSONIG00000012017	r3hdm1	98	46.566	Oreochromis_niloticus
ENSBTAG00000013302	R3HDM1	100	79.631	ENSOANG00000007987	R3HDM1	100	79.543	Ornithorhynchus_anatinus
ENSBTAG00000013302	R3HDM1	89	89.784	ENSOCUG00000017366	R3HDM1	98	89.293	Oryctolagus_cuniculus
ENSBTAG00000013302	R3HDM1	85	53.448	ENSORLG00000004297	r3hdm1	99	46.452	Oryzias_latipes
ENSBTAG00000013302	R3HDM1	89	45.682	ENSORLG00015017355	r3hdm1	99	46.402	Oryzias_latipes_hsok
ENSBTAG00000013302	R3HDM1	100	90.388	ENSOGAG00000003136	R3HDM1	100	90.564	Otolemur_garnettii
ENSBTAG00000013302	R3HDM1	100	96.025	ENSOARG00000010788	R3HDM1	100	96.025	Ovis_aries
ENSBTAG00000013302	R3HDM1	100	91.308	ENSPPAG00000027858	R3HDM1	100	91.045	Pan_paniscus
ENSBTAG00000013302	R3HDM1	100	93.116	ENSPPRG00000002626	R3HDM1	100	94.754	Panthera_pardus
ENSBTAG00000013302	R3HDM1	100	93.116	ENSPTIG00000016581	R3HDM1	100	94.590	Panthera_tigris_altaica
ENSBTAG00000013302	R3HDM1	100	91.220	ENSPTRG00000012494	R3HDM1	100	90.957	Pan_troglodytes
ENSBTAG00000013302	R3HDM1	100	91.381	ENSPANG00000026448	R3HDM1	100	91.436	Papio_anubis
ENSBTAG00000013302	R3HDM1	92	67.830	ENSPKIG00000004328	r3hdm1	91	75.873	Paramormyrops_kingsleyae
ENSBTAG00000013302	R3HDM1	100	75.968	ENSPSIG00000012915	R3HDM1	100	75.595	Pelodiscus_sinensis
ENSBTAG00000013302	R3HDM1	100	91.285	ENSPEMG00000015187	R3hdm1	100	91.197	Peromyscus_maniculatus_bairdii
ENSBTAG00000013302	R3HDM1	88	42.523	ENSPMAG00000003369	-	98	42.884	Petromyzon_marinus
ENSBTAG00000013302	R3HDM1	100	84.548	ENSPCIG00000002491	R3HDM1	100	89.706	Phascolarctos_cinereus
ENSBTAG00000013302	R3HDM1	89	49.021	ENSPFOG00000015036	r3hdm1	99	48.030	Poecilia_formosa
ENSBTAG00000013302	R3HDM1	88	47.822	ENSPLAG00000018042	r3hdm1	99	47.202	Poecilia_latipinna
ENSBTAG00000013302	R3HDM1	89	46.945	ENSPMEG00000023947	r3hdm1	99	47.245	Poecilia_mexicana
ENSBTAG00000013302	R3HDM1	89	48.790	ENSPREG00000007902	r3hdm1	88	62.291	Poecilia_reticulata
ENSBTAG00000013302	R3HDM1	100	89.719	ENSPPYG00000012815	R3HDM1	100	89.016	Pongo_abelii
ENSBTAG00000013302	R3HDM1	100	79.259	ENSPCAG00000006208	R3HDM1	100	79.259	Procavia_capensis
ENSBTAG00000013302	R3HDM1	100	88.938	ENSPCOG00000012698	R3HDM1	100	92.345	Propithecus_coquereli
ENSBTAG00000013302	R3HDM1	100	83.231	ENSPVAG00000006098	R3HDM1	100	83.758	Pteropus_vampyrus
ENSBTAG00000013302	R3HDM1	86	76.531	ENSPNAG00000005436	R3HDM1	99	76.206	Pygocentrus_nattereri
ENSBTAG00000013302	R3HDM1	53	58.400	ENSPNAG00000004162	arpp21	57	58.400	Pygocentrus_nattereri
ENSBTAG00000013302	R3HDM1	100	56.102	ENSPNAG00000013952	r3hdm1	100	62.676	Pygocentrus_nattereri
ENSBTAG00000013302	R3HDM1	100	89.789	ENSRNOG00000004099	R3hdm1	100	89.506	Rattus_norvegicus
ENSBTAG00000013302	R3HDM1	100	88.586	ENSRBIG00000033317	R3HDM1	100	98.155	Rhinopithecus_bieti
ENSBTAG00000013302	R3HDM1	100	92.170	ENSRROG00000034534	R3HDM1	100	92.358	Rhinopithecus_roxellana
ENSBTAG00000013302	R3HDM1	100	90.941	ENSSBOG00000020389	R3HDM1	100	92.345	Saimiri_boliviensis_boliviensis
ENSBTAG00000013302	R3HDM1	100	82.798	ENSSHAG00000016999	R3HDM1	100	82.514	Sarcophilus_harrisii
ENSBTAG00000013302	R3HDM1	100	55.017	ENSSFOG00015019851	-	99	57.195	Scleropages_formosus
ENSBTAG00000013302	R3HDM1	93	70.843	ENSSFOG00015014134	r3hdm1	100	70.773	Scleropages_formosus
ENSBTAG00000013302	R3HDM1	99	44.186	ENSSMAG00000001669	r3hdm1	99	44.374	Scophthalmus_maximus
ENSBTAG00000013302	R3HDM1	89	46.267	ENSSDUG00000010749	r3hdm1	99	47.200	Seriola_dumerili
ENSBTAG00000013302	R3HDM1	99	46.218	ENSSLDG00000004499	r3hdm1	99	46.245	Seriola_lalandi_dorsalis
ENSBTAG00000013302	R3HDM1	62	100.000	ENSSARG00000000352	-	66	100.000	Sorex_araneus
ENSBTAG00000013302	R3HDM1	100	78.433	ENSSPUG00000004167	R3HDM1	100	78.257	Sphenodon_punctatus
ENSBTAG00000013302	R3HDM1	89	48.611	ENSSPAG00000004648	r3hdm1	99	48.448	Stegastes_partitus
ENSBTAG00000013302	R3HDM1	100	96.737	ENSSSCG00000015692	R3HDM1	100	97.681	Sus_scrofa
ENSBTAG00000013302	R3HDM1	100	71.466	ENSTGUG00000011750	R3HDM1	100	71.265	Taeniopygia_guttata
ENSBTAG00000013302	R3HDM1	88	44.985	ENSTRUG00000011654	r3hdm1	93	54.415	Takifugu_rubripes
ENSBTAG00000013302	R3HDM1	87	44.693	ENSTNIG00000010362	r3hdm1	95	45.343	Tetraodon_nigroviridis
ENSBTAG00000013302	R3HDM1	100	86.533	ENSTTRG00000003935	R3HDM1	100	86.533	Tursiops_truncatus
ENSBTAG00000013302	R3HDM1	71	92.336	ENSUAMG00000024806	R3HDM1	99	95.387	Ursus_americanus
ENSBTAG00000013302	R3HDM1	100	92.715	ENSUMAG00000005552	R3HDM1	100	93.283	Ursus_maritimus
ENSBTAG00000013302	R3HDM1	97	92.982	ENSVPAG00000007333	R3HDM1	93	92.982	Vicugna_pacos
ENSBTAG00000013302	R3HDM1	100	96.039	ENSVVUG00000006457	R3HDM1	100	96.039	Vulpes_vulpes
ENSBTAG00000013302	R3HDM1	90	65.918	ENSXETG00000019330	r3hdm1	100	65.455	Xenopus_tropicalis
ENSBTAG00000013302	R3HDM1	71	47.922	ENSXCOG00000017448	r3hdm1	94	48.454	Xiphophorus_couchianus
ENSBTAG00000013302	R3HDM1	89	48.372	ENSXMAG00000007885	r3hdm1	99	47.712	Xiphophorus_maculatus