EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000013440 (Gene tree)
Gene ID: 540172
Gene Symbol: RBM42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 7581 bases
Position: chr18:46355865-46363445
Accession: 33801
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000017884	RRM_1	PF00076.22	8e-18	1	1
ENSBTAP00000063810	RRM_1	PF00076.22	8.6e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000086550	-	1749	XM_005219000	ENSBTAP00000063810	477 (aa)	XP_005219057	UPI00004F2727
ENSBTAT00000017884	-	1683	XM_024978457	ENSBTAP00000017884	455 (aa)	XP_024834225	F1N7X9

Gene Model

Click here to download ENSBTAG00000013440's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000013440's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000013440	RBM42	100	98.472	ENSG00000126254	RBM42	100	100.000	Homo_sapiens
ENSBTAG00000013440	RBM42	100	97.704	ENSAMEG00000000524	RBM42	100	97.704	Ailuropoda_melanoleuca
ENSBTAG00000013440	RBM42	100	98.462	ENSANAG00000027537	RBM42	100	100.000	Aotus_nancymaae
ENSBTAG00000013440	RBM42	100	97.582	ENSCJAG00000010220	RBM42	100	100.000	Callithrix_jacchus
ENSBTAG00000013440	RBM42	100	91.868	ENSCAFG00020018628	RBM42	100	96.739	Canis_lupus_dingo
ENSBTAG00000013440	RBM42	100	99.161	ENSCHIG00000009518	RBM42	100	99.161	Capra_hircus
ENSBTAG00000013440	RBM42	100	98.246	ENSTSYG00000014688	RBM42	100	100.000	Carlito_syrichta
ENSBTAG00000013440	RBM42	81	97.409	ENSCAPG00000009566	RBM42	99	97.409	Cavia_aperea
ENSBTAG00000013440	RBM42	100	97.694	ENSCPOG00000012365	RBM42	99	97.694	Cavia_porcellus
ENSBTAG00000013440	RBM42	100	98.901	ENSCCAG00000034440	RBM42	100	100.000	Cebus_capucinus
ENSBTAG00000013440	RBM42	100	97.917	ENSCATG00000041924	RBM42	100	100.000	Cercocebus_atys
ENSBTAG00000013440	RBM42	100	97.065	ENSCLAG00000012865	RBM42	99	97.065	Chinchilla_lanigera
ENSBTAG00000013440	RBM42	100	96.943	ENSCSAG00000004422	RBM42	100	96.943	Chlorocebus_sabaeus
ENSBTAG00000013440	RBM42	100	88.050	ENSCANG00000030272	RBM42	100	88.050	Colobus_angolensis_palliatus
ENSBTAG00000013440	RBM42	100	96.436	ENSCGRG00001018540	Rbm42	99	96.436	Cricetulus_griseus_chok1gshd
ENSBTAG00000013440	RBM42	100	96.667	ENSDNOG00000037397	RBM42	100	96.667	Dasypus_novemcinctus
ENSBTAG00000013440	RBM42	100	96.646	ENSDORG00000013001	Rbm42	99	96.646	Dipodomys_ordii
ENSBTAG00000013440	RBM42	75	94.203	ENSETEG00000007878	RBM42	74	94.203	Echinops_telfairi
ENSBTAG00000013440	RBM42	100	97.363	ENSEASG00005001074	RBM42	100	97.363	Equus_asinus_asinus
ENSBTAG00000013440	RBM42	100	97.363	ENSECAG00000018215	RBM42	100	97.363	Equus_caballus
ENSBTAG00000013440	RBM42	100	98.681	ENSFCAG00000006376	RBM42	100	100.000	Felis_catus
ENSBTAG00000013440	RBM42	100	95.405	ENSFDAG00000007440	RBM42	99	95.405	Fukomys_damarensis
ENSBTAG00000013440	RBM42	100	98.125	ENSGGOG00000009972	RBM42	100	100.000	Gorilla_gorilla
ENSBTAG00000013440	RBM42	100	94.505	ENSHGLG00000008418	RBM42	99	95.178	Heterocephalus_glaber_female
ENSBTAG00000013440	RBM42	100	94.505	ENSHGLG00100018667	RBM42	99	95.178	Heterocephalus_glaber_male
ENSBTAG00000013440	RBM42	100	97.143	ENSSTOG00000013050	RBM42	100	96.855	Ictidomys_tridecemlineatus
ENSBTAG00000013440	RBM42	100	96.017	ENSJJAG00000010421	Rbm42	99	96.017	Jaculus_jaculus
ENSBTAG00000013440	RBM42	98	93.162	ENSLAFG00000014993	RBM42	99	92.034	Loxodonta_africana
ENSBTAG00000013440	RBM42	100	97.917	ENSMFAG00000002758	RBM42	100	100.000	Macaca_fascicularis
ENSBTAG00000013440	RBM42	100	98.253	ENSMMUG00000018954	RBM42	100	100.000	Macaca_mulatta
ENSBTAG00000013440	RBM42	100	97.917	ENSMNEG00000030009	RBM42	100	100.000	Macaca_nemestrina
ENSBTAG00000013440	RBM42	100	97.917	ENSMLEG00000036119	RBM42	100	100.000	Mandrillus_leucophaeus
ENSBTAG00000013440	RBM42	100	98.901	ENSMICG00000009880	RBM42	100	100.000	Microcebus_murinus
ENSBTAG00000013440	RBM42	100	96.226	ENSMOCG00000000405	Rbm42	99	96.226	Microtus_ochrogaster
ENSBTAG00000013440	RBM42	100	96.855	MGP_CAROLIEiJ_G0029536	Rbm42	99	96.855	Mus_caroli
ENSBTAG00000013440	RBM42	100	96.855	ENSMUSG00000036733	Rbm42	99	96.855	Mus_musculus
ENSBTAG00000013440	RBM42	100	96.855	MGP_PahariEiJ_G0012770	Rbm42	99	96.855	Mus_pahari
ENSBTAG00000013440	RBM42	100	96.855	MGP_SPRETEiJ_G0030632	Rbm42	99	96.855	Mus_spretus
ENSBTAG00000013440	RBM42	100	97.582	ENSMPUG00000006288	RBM42	100	97.582	Mustela_putorius_furo
ENSBTAG00000013440	RBM42	100	96.855	ENSMLUG00000011334	RBM42	100	96.855	Myotis_lucifugus
ENSBTAG00000013440	RBM42	100	96.226	ENSNGAG00000019698	Rbm42	99	96.226	Nannospalax_galili
ENSBTAG00000013440	RBM42	74	94.362	ENSNLEG00000011272	-	99	86.508	Nomascus_leucogenys
ENSBTAG00000013440	RBM42	96	81.385	ENSMEUG00000016300	RBM42	100	80.658	Notamacropus_eugenii
ENSBTAG00000013440	RBM42	100	93.501	ENSOPRG00000001229	RBM42	100	91.614	Ochotona_princeps
ENSBTAG00000013440	RBM42	100	97.275	ENSODEG00000013705	RBM42	99	97.275	Octodon_degus
ENSBTAG00000013440	RBM42	100	96.070	ENSOCUG00000003337	RBM42	100	96.070	Oryctolagus_cuniculus
ENSBTAG00000013440	RBM42	100	96.855	ENSOGAG00000004144	RBM42	100	96.855	Otolemur_garnettii
ENSBTAG00000013440	RBM42	98	91.221	ENSOARG00000004926	RBM42	98	94.328	Ovis_aries
ENSBTAG00000013440	RBM42	100	98.532	ENSPPAG00000037315	RBM42	100	100.000	Pan_paniscus
ENSBTAG00000013440	RBM42	100	98.681	ENSPPRG00000016784	RBM42	100	100.000	Panthera_pardus
ENSBTAG00000013440	RBM42	100	98.242	ENSPTIG00000019270	RBM42	100	100.000	Panthera_tigris_altaica
ENSBTAG00000013440	RBM42	100	98.125	ENSPTRG00000010852	RBM42	100	100.000	Pan_troglodytes
ENSBTAG00000013440	RBM42	100	98.253	ENSPANG00000017032	RBM42	100	100.000	Papio_anubis
ENSBTAG00000013440	RBM42	100	97.275	ENSPEMG00000012065	Rbm42	99	97.275	Peromyscus_maniculatus_bairdii
ENSBTAG00000013440	RBM42	100	97.113	ENSPPYG00000009871	RBM42	100	97.113	Pongo_abelii
ENSBTAG00000013440	RBM42	89	95.604	ENSPCAG00000013053	RBM42	100	82.390	Procavia_capensis
ENSBTAG00000013440	RBM42	70	97.598	ENSPCOG00000020672	RBM42	81	97.598	Propithecus_coquereli
ENSBTAG00000013440	RBM42	100	98.901	ENSPCOG00000026433	-	100	100.000	Propithecus_coquereli
ENSBTAG00000013440	RBM42	100	97.904	ENSPVAG00000012815	RBM42	100	97.904	Pteropus_vampyrus
ENSBTAG00000013440	RBM42	100	97.065	ENSRNOG00000024278	Rbm42	99	97.065	Rattus_norvegicus
ENSBTAG00000013440	RBM42	100	97.917	ENSRBIG00000007566	RBM42	100	100.000	Rhinopithecus_bieti
ENSBTAG00000013440	RBM42	100	98.532	ENSRROG00000042313	RBM42	100	100.000	Rhinopithecus_roxellana
ENSBTAG00000013440	RBM42	85	98.522	ENSSBOG00000030666	RBM42	100	98.522	Saimiri_boliviensis_boliviensis
ENSBTAG00000013440	RBM42	100	87.292	ENSSARG00000010724	RBM42	100	87.292	Sorex_araneus
ENSBTAG00000013440	RBM42	100	97.484	ENSSSCG00000002905	RBM42	100	97.484	Sus_scrofa
ENSBTAG00000013440	RBM42	100	97.904	ENSUAMG00000020711	RBM42	100	97.904	Ursus_americanus
ENSBTAG00000013440	RBM42	100	98.242	ENSUMAG00000020223	RBM42	100	98.242	Ursus_maritimus
ENSBTAG00000013440	RBM42	100	97.363	ENSVVUG00000015117	RBM42	100	97.363	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component