EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000013772 (Gene tree)
Gene ID: 784123
Gene Symbol: SRRM1
Alias: -
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 29413 bases
Position: chr2:128253260-128282672
Accession: 35294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000053480	PWI	PF01480.17	7.9e-30	1	1
ENSBTAP00000071447	PWI	PF01480.17	8e-30	1	1
ENSBTAP00000072910	PWI	PF01480.17	8.3e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000076505	-	3807	-	ENSBTAP00000071447	915 (aa)	XP_024838352	UPI000D5370D8
ENSBTAT00000069668	-	4176	-	ENSBTAP00000072910	899 (aa)	-	-
ENSBTAT00000061408	-	3765	-	ENSBTAP00000053480	901 (aa)	XP_002685753	E1BP16

Gene Model

Click here to download ENSBTAG00000013772's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000013772's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000013772	SRRM1	100	97.677	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSBTAG00000013772	SRRM1	100	97.495	ENSAMEG00000010075	SRRM1	100	97.495	Ailuropoda_melanoleuca
ENSBTAG00000013772	SRRM1	60	65.320	ENSAPLG00000002066	SRRM1	59	76.868	Anas_platyrhynchos
ENSBTAG00000013772	SRRM1	100	97.235	ENSANAG00000035606	SRRM1	100	97.235	Aotus_nancymaae
ENSBTAG00000013772	SRRM1	100	96.187	ENSCJAG00000020822	SRRM1	100	96.346	Callithrix_jacchus
ENSBTAG00000013772	SRRM1	100	98.009	ENSCAFG00020020948	SRRM1	100	98.009	Canis_lupus_dingo
ENSBTAG00000013772	SRRM1	100	98.138	ENSCHIG00000014656	SRRM1	100	98.138	Capra_hircus
ENSBTAG00000013772	SRRM1	100	97.456	ENSTSYG00000006782	SRRM1	100	97.456	Carlito_syrichta
ENSBTAG00000013772	SRRM1	99	94.631	ENSCAPG00000011473	SRRM1	100	94.631	Cavia_aperea
ENSBTAG00000013772	SRRM1	100	95.671	ENSCPOG00000015594	SRRM1	100	95.671	Cavia_porcellus
ENSBTAG00000013772	SRRM1	100	97.235	ENSCCAG00000029474	SRRM1	100	97.235	Cebus_capucinus
ENSBTAG00000013772	SRRM1	100	96.559	ENSCLAG00000014592	SRRM1	100	96.559	Chinchilla_lanigera
ENSBTAG00000013772	SRRM1	73	96.667	ENSCHOG00000000027	SRRM1	73	96.667	Choloepus_hoffmanni
ENSBTAG00000013772	SRRM1	56	96.040	ENSCANG00000028271	SRRM1	100	97.345	Colobus_angolensis_palliatus
ENSBTAG00000013772	SRRM1	96	93.439	ENSDNOG00000049141	SRRM1	98	93.439	Dasypus_novemcinctus
ENSBTAG00000013772	SRRM1	100	97.056	ENSEASG00005004270	SRRM1	100	97.056	Equus_asinus_asinus
ENSBTAG00000013772	SRRM1	100	97.165	ENSECAG00000026981	SRRM1	100	97.165	Equus_caballus
ENSBTAG00000013772	SRRM1	100	98.119	ENSFCAG00000000678	-	100	98.119	Felis_catus
ENSBTAG00000013772	SRRM1	100	96.892	ENSFDAG00000009903	SRRM1	100	96.892	Fukomys_damarensis
ENSBTAG00000013772	SRRM1	100	97.566	ENSGGOG00000005209	SRRM1	100	97.566	Gorilla_gorilla
ENSBTAG00000013772	SRRM1	100	96.892	ENSHGLG00000017105	SRRM1	100	96.892	Heterocephalus_glaber_female
ENSBTAG00000013772	SRRM1	99	96.433	ENSHGLG00100016772	SRRM1	99	96.433	Heterocephalus_glaber_male
ENSBTAG00000013772	SRRM1	100	97.456	ENSSTOG00000014640	SRRM1	100	97.456	Ictidomys_tridecemlineatus
ENSBTAG00000013772	SRRM1	60	96.276	ENSJJAG00000018643	Srrm1	54	93.182	Jaculus_jaculus
ENSBTAG00000013772	SRRM1	100	94.899	ENSLAFG00000013830	SRRM1	100	94.899	Loxodonta_africana
ENSBTAG00000013772	SRRM1	86	77.407	ENSMFAG00000038841	-	61	75.252	Macaca_fascicularis
ENSBTAG00000013772	SRRM1	56	96.436	ENSMFAG00000025726	SRRM1	100	97.566	Macaca_fascicularis
ENSBTAG00000013772	SRRM1	55	78.672	ENSMMUG00000039269	-	59	75.050	Macaca_mulatta
ENSBTAG00000013772	SRRM1	60	100.000	ENSMLEG00000038030	-	100	90.632	Mandrillus_leucophaeus
ENSBTAG00000013772	SRRM1	59	68.657	ENSMLEG00000032221	-	58	70.565	Mandrillus_leucophaeus
ENSBTAG00000013772	SRRM1	100	97.456	ENSMICG00000006553	SRRM1	100	97.456	Microcebus_murinus
ENSBTAG00000013772	SRRM1	56	97.309	MGP_CAROLIEiJ_G0026636	Srrm1	100	85.965	Mus_caroli
ENSBTAG00000013772	SRRM1	56	97.309	ENSMUSG00000028809	Srrm1	100	85.965	Mus_musculus
ENSBTAG00000013772	SRRM1	51	97.207	MGP_PahariEiJ_G0028969	Srrm1	100	85.965	Mus_pahari
ENSBTAG00000013772	SRRM1	56	97.309	MGP_SPRETEiJ_G0027616	Srrm1	100	85.965	Mus_spretus
ENSBTAG00000013772	SRRM1	100	94.252	ENSNGAG00000014562	Srrm1	100	95.705	Nannospalax_galili
ENSBTAG00000013772	SRRM1	100	97.677	ENSNLEG00000008966	SRRM1	100	97.677	Nomascus_leucogenys
ENSBTAG00000013772	SRRM1	52	89.180	ENSMEUG00000014704	SRRM1	53	84.590	Notamacropus_eugenii
ENSBTAG00000013772	SRRM1	100	96.409	ENSOCUG00000008438	SRRM1	100	96.409	Oryctolagus_cuniculus
ENSBTAG00000013772	SRRM1	100	96.405	ENSOGAG00000010210	SRRM1	100	96.405	Otolemur_garnettii
ENSBTAG00000013772	SRRM1	94	99.172	ENSOARG00000006453	SRRM1	99	99.408	Ovis_aries
ENSBTAG00000013772	SRRM1	100	97.566	ENSPPAG00000043918	SRRM1	100	97.566	Pan_paniscus
ENSBTAG00000013772	SRRM1	100	98.119	ENSPPRG00000002509	SRRM1	100	98.119	Panthera_pardus
ENSBTAG00000013772	SRRM1	100	92.283	ENSPTIG00000008778	-	100	92.283	Panthera_tigris_altaica
ENSBTAG00000013772	SRRM1	100	97.677	ENSPTRG00000000349	SRRM1	100	97.677	Pan_troglodytes
ENSBTAG00000013772	SRRM1	53	96.495	ENSPANG00000010194	SRRM1	100	96.923	Papio_anubis
ENSBTAG00000013772	SRRM1	55	77.016	ENSPANG00000035568	-	59	71.573	Papio_anubis
ENSBTAG00000013772	SRRM1	100	96.950	ENSPPYG00000001716	SRRM1	100	96.950	Pongo_abelii
ENSBTAG00000013772	SRRM1	100	96.518	ENSPCOG00000021311	SRRM1	100	96.518	Propithecus_coquereli
ENSBTAG00000013772	SRRM1	100	97.168	ENSPVAG00000005836	SRRM1	100	97.168	Pteropus_vampyrus
ENSBTAG00000013772	SRRM1	56	96.040	ENSRROG00000035151	SRRM1	100	97.345	Rhinopithecus_roxellana
ENSBTAG00000013772	SRRM1	100	95.534	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSBTAG00000013772	SRRM1	61	94.098	ENSSARG00000013718	SRRM1	62	94.098	Sorex_araneus
ENSBTAG00000013772	SRRM1	99	98.134	ENSSSCG00000032947	SRRM1	100	98.066	Sus_scrofa
ENSBTAG00000013772	SRRM1	100	96.725	ENSTBEG00000000100	SRRM1	100	96.725	Tupaia_belangeri
ENSBTAG00000013772	SRRM1	99	96.926	ENSTTRG00000009365	SRRM1	100	96.926	Tursiops_truncatus
ENSBTAG00000013772	SRRM1	90	96.178	ENSUMAG00000013121	SRRM1	95	98.120	Ursus_maritimus
ENSBTAG00000013772	SRRM1	96	93.764	ENSVPAG00000007698	SRRM1	100	93.764	Vicugna_pacos
ENSBTAG00000013772	SRRM1	99	94.972	ENSVVUG00000026966	SRRM1	97	94.972	Vulpes_vulpes