EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000013946 (Gene tree)
Gene ID: 510322
Gene Symbol: PRPF3
Alias: -
Full Name: pre-mRNA processing factor 3
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 19245 bases
Position: chr3:20311487-20330731
Accession: 33373
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000018533	PRP3	PF08572.10	2.6e-79	1	1
ENSBTAP00000066951	PRP3	PF08572.10	2.6e-79	1	1
ENSBTAP00000071368	PRP3	PF08572.10	4.8e-51	1	1
ENSBTAP00000018533	PWI	PF01480.17	4e-13	1	1
ENSBTAP00000066951	PWI	PF01480.17	4e-13	1	1
ENSBTAP00000071368	PWI	PF01480.17	4.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000083022	-	3060	-	ENSBTAP00000066951	683 (aa)	XP_005203927	UPI00000729AA
ENSBTAT00000018533	-	2968	-	ENSBTAP00000018533	683 (aa)	XP_005203927	F2Z4C4
ENSBTAT00000080551	-	1986	-	ENSBTAP00000071368	661 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000013946's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000013946's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000013946	PRPF3	100	100.000	ENSG00000117360	PRPF3	100	100.000	Homo_sapiens
ENSBTAG00000013946	PRPF3	100	71.751	ENSAPOG00000015584	prpf3	99	72.316	Acanthochromis_polyacanthus
ENSBTAG00000013946	PRPF3	100	99.854	ENSAMEG00000001630	PRPF3	100	99.854	Ailuropoda_melanoleuca
ENSBTAG00000013946	PRPF3	100	71.994	ENSACIG00000007876	prpf3	99	71.004	Amphilophus_citrinellus
ENSBTAG00000013946	PRPF3	100	71.045	ENSAOCG00000011449	prpf3	99	72.262	Amphiprion_ocellaris
ENSBTAG00000013946	PRPF3	100	71.266	ENSATEG00000023583	prpf3	99	71.693	Anabas_testudineus
ENSBTAG00000013946	PRPF3	100	95.029	ENSAPLG00000002440	PRPF3	100	95.029	Anas_platyrhynchos
ENSBTAG00000013946	PRPF3	100	92.576	ENSACAG00000003176	PRPF3	100	92.868	Anolis_carolinensis
ENSBTAG00000013946	PRPF3	100	100.000	ENSANAG00000026138	PRPF3	100	100.000	Aotus_nancymaae
ENSBTAG00000013946	PRPF3	100	72.294	ENSACLG00000020127	prpf3	99	72.006	Astatotilapia_calliptera
ENSBTAG00000013946	PRPF3	100	73.803	ENSAMXG00000007306	prpf3	99	73.380	Astyanax_mexicanus
ENSBTAG00000013946	PRPF3	81	38.790	WBGene00010844	prp-3	82	38.929	Caenorhabditis_elegans
ENSBTAG00000013946	PRPF3	100	100.000	ENSCJAG00000009926	PRPF3	100	100.000	Callithrix_jacchus
ENSBTAG00000013946	PRPF3	100	100.000	ENSCAFG00000011820	PRPF3	100	100.000	Canis_familiaris
ENSBTAG00000013946	PRPF3	80	100.000	ENSCAFG00020019653	PRPF3	100	100.000	Canis_lupus_dingo
ENSBTAG00000013946	PRPF3	100	100.000	ENSCHIG00000015434	PRPF3	100	100.000	Capra_hircus
ENSBTAG00000013946	PRPF3	100	99.414	ENSTSYG00000001383	PRPF3	100	99.414	Carlito_syrichta
ENSBTAG00000013946	PRPF3	93	82.390	ENSCAPG00000017812	PRPF3	95	82.862	Cavia_aperea
ENSBTAG00000013946	PRPF3	100	99.561	ENSCPOG00000008068	PRPF3	100	99.561	Cavia_porcellus
ENSBTAG00000013946	PRPF3	100	100.000	ENSCCAG00000026380	PRPF3	100	100.000	Cebus_capucinus
ENSBTAG00000013946	PRPF3	100	86.012	ENSCATG00000041778	PRPF3	100	86.012	Cercocebus_atys
ENSBTAG00000013946	PRPF3	100	99.854	ENSCLAG00000015009	PRPF3	100	99.854	Chinchilla_lanigera
ENSBTAG00000013946	PRPF3	77	100.000	ENSCHOG00000011645	PRPF3	77	100.000	Choloepus_hoffmanni
ENSBTAG00000013946	PRPF3	100	96.345	ENSCPBG00000008216	PRPF3	100	96.345	Chrysemys_picta_bellii
ENSBTAG00000013946	PRPF3	61	59.189	ENSCING00000003312	-	99	58.711	Ciona_intestinalis
ENSBTAG00000013946	PRPF3	83	54.035	ENSCSAVG00000008720	-	94	54.792	Ciona_savignyi
ENSBTAG00000013946	PRPF3	100	99.268	ENSCANG00000036769	PRPF3	100	99.268	Colobus_angolensis_palliatus
ENSBTAG00000013946	PRPF3	100	100.000	ENSCGRG00001019100	Prpf3	100	100.000	Cricetulus_griseus_chok1gshd
ENSBTAG00000013946	PRPF3	100	100.000	ENSCGRG00000007322	Prpf3	100	100.000	Cricetulus_griseus_crigri
ENSBTAG00000013946	PRPF3	100	72.011	ENSCSEG00000002532	prpf3	99	70.605	Cynoglossus_semilaevis
ENSBTAG00000013946	PRPF3	100	72.624	ENSCVAG00000009318	prpf3	99	72.340	Cyprinodon_variegatus
ENSBTAG00000013946	PRPF3	100	72.973	ENSDARG00000086425	prpf3	99	72.688	Danio_rerio
ENSBTAG00000013946	PRPF3	100	89.458	ENSDNOG00000005904	PRPF3	100	90.630	Dasypus_novemcinctus
ENSBTAG00000013946	PRPF3	93	99.685	ENSDORG00000008664	Prpf3	100	99.685	Dipodomys_ordii
ENSBTAG00000013946	PRPF3	81	53.086	FBgn0036915	Prp3	99	53.273	Drosophila_melanogaster
ENSBTAG00000013946	PRPF3	100	98.536	ENSETEG00000019124	PRPF3	100	98.536	Echinops_telfairi
ENSBTAG00000013946	PRPF3	100	63.934	ENSEBUG00000011680	prpf3	99	63.934	Eptatretus_burgeri
ENSBTAG00000013946	PRPF3	100	99.854	ENSEASG00005001566	PRPF3	100	99.854	Equus_asinus_asinus
ENSBTAG00000013946	PRPF3	100	100.000	ENSECAG00000019840	PRPF3	100	100.000	Equus_caballus
ENSBTAG00000013946	PRPF3	85	99.291	ENSEEUG00000007338	PRPF3	85	99.291	Erinaceus_europaeus
ENSBTAG00000013946	PRPF3	100	65.906	ENSELUG00000013624	prpf3	99	66.334	Esox_lucius
ENSBTAG00000013946	PRPF3	100	100.000	ENSFCAG00000013940	PRPF3	100	100.000	Felis_catus
ENSBTAG00000013946	PRPF3	100	99.414	ENSFDAG00000010365	PRPF3	100	99.414	Fukomys_damarensis
ENSBTAG00000013946	PRPF3	100	73.132	ENSFHEG00000021746	prpf3	99	72.845	Fundulus_heteroclitus
ENSBTAG00000013946	PRPF3	100	71.287	ENSGMOG00000008535	prpf3	99	71.146	Gadus_morhua
ENSBTAG00000013946	PRPF3	100	94.883	ENSGALG00000028205	PRPF3	100	94.883	Gallus_gallus
ENSBTAG00000013946	PRPF3	100	72.350	ENSGAFG00000012671	prpf3	99	72.063	Gambusia_affinis
ENSBTAG00000013946	PRPF3	100	70.963	ENSGACG00000011792	prpf3	99	71.246	Gasterosteus_aculeatus
ENSBTAG00000013946	PRPF3	100	96.053	ENSGAGG00000013765	PRPF3	100	95.811	Gopherus_agassizii
ENSBTAG00000013946	PRPF3	86	100.000	ENSGGOG00000013174	PRPF3	100	100.000	Gorilla_gorilla
ENSBTAG00000013946	PRPF3	100	72.727	ENSHBUG00000003493	prpf3	99	72.439	Haplochromis_burtoni
ENSBTAG00000013946	PRPF3	100	70.278	ENSHGLG00000016033	-	100	70.864	Heterocephalus_glaber_female
ENSBTAG00000013946	PRPF3	100	99.561	ENSHGLG00000016569	PRPF3	100	99.561	Heterocephalus_glaber_female
ENSBTAG00000013946	PRPF3	100	99.561	ENSHGLG00100007590	PRPF3	100	99.561	Heterocephalus_glaber_male
ENSBTAG00000013946	PRPF3	100	70.864	ENSHGLG00100008951	-	95	90.909	Heterocephalus_glaber_male
ENSBTAG00000013946	PRPF3	100	68.563	ENSHCOG00000014058	prpf3	99	68.279	Hippocampus_comes
ENSBTAG00000013946	PRPF3	100	73.466	ENSIPUG00000000902	PRPF3	99	73.789	Ictalurus_punctatus
ENSBTAG00000013946	PRPF3	100	100.000	ENSSTOG00000001889	PRPF3	100	100.000	Ictidomys_tridecemlineatus
ENSBTAG00000013946	PRPF3	100	70.881	ENSKMAG00000001390	prpf3	99	70.597	Kryptolebias_marmoratus
ENSBTAG00000013946	PRPF3	100	70.266	ENSLBEG00000026310	prpf3	99	71.186	Labrus_bergylta
ENSBTAG00000013946	PRPF3	93	83.070	ENSLACG00000010541	PRPF3	100	83.228	Latimeria_chalumnae
ENSBTAG00000013946	PRPF3	100	99.707	ENSLAFG00000004713	PRPF3	100	99.707	Loxodonta_africana
ENSBTAG00000013946	PRPF3	100	100.000	ENSMFAG00000039791	PRPF3	100	100.000	Macaca_fascicularis
ENSBTAG00000013946	PRPF3	90	100.000	ENSMMUG00000016301	PRPF3	98	100.000	Macaca_mulatta
ENSBTAG00000013946	PRPF3	100	100.000	ENSMNEG00000038161	PRPF3	100	100.000	Macaca_nemestrina
ENSBTAG00000013946	PRPF3	86	100.000	ENSMLEG00000040609	PRPF3	100	100.000	Mandrillus_leucophaeus
ENSBTAG00000013946	PRPF3	99	67.257	ENSMLEG00000041065	-	98	66.667	Mandrillus_leucophaeus
ENSBTAG00000013946	PRPF3	100	71.955	ENSMAMG00000014968	prpf3	99	71.813	Mastacembelus_armatus
ENSBTAG00000013946	PRPF3	100	70.687	ENSMZEG00005015970	prpf3	99	70.365	Maylandia_zebra
ENSBTAG00000013946	PRPF3	100	94.883	ENSMGAG00000000707	PRPF3	100	94.883	Meleagris_gallopavo
ENSBTAG00000013946	PRPF3	100	99.707	ENSMAUG00000017112	Prpf3	100	99.707	Mesocricetus_auratus
ENSBTAG00000013946	PRPF3	100	99.707	ENSMICG00000015386	PRPF3	100	99.707	Microcebus_murinus
ENSBTAG00000013946	PRPF3	100	99.854	ENSMOCG00000000242	Prpf3	100	99.854	Microtus_ochrogaster
ENSBTAG00000013946	PRPF3	100	66.762	ENSMMOG00000016131	prpf3	99	67.775	Mola_mola
ENSBTAG00000013946	PRPF3	100	98.389	ENSMODG00000018774	PRPF3	100	98.389	Monodelphis_domestica
ENSBTAG00000013946	PRPF3	100	70.429	ENSMALG00000007257	prpf3	99	70.429	Monopterus_albus
ENSBTAG00000013946	PRPF3	100	99.561	MGP_CAROLIEiJ_G0025354	Prpf3	100	99.561	Mus_caroli
ENSBTAG00000013946	PRPF3	100	99.561	ENSMUSG00000015748	Prpf3	100	99.561	Mus_musculus
ENSBTAG00000013946	PRPF3	100	99.414	MGP_PahariEiJ_G0026798	Prpf3	100	99.414	Mus_pahari
ENSBTAG00000013946	PRPF3	100	99.561	MGP_SPRETEiJ_G0026298	Prpf3	100	99.561	Mus_spretus
ENSBTAG00000013946	PRPF3	100	96.633	ENSMPUG00000005080	PRPF3	100	96.633	Mustela_putorius_furo
ENSBTAG00000013946	PRPF3	100	99.269	ENSMLUG00000004646	-	100	99.269	Myotis_lucifugus
ENSBTAG00000013946	PRPF3	100	100.000	ENSNGAG00000000910	Prpf3	100	100.000	Nannospalax_galili
ENSBTAG00000013946	PRPF3	100	70.531	ENSNBRG00000003462	prpf3	99	70.251	Neolamprologus_brichardi
ENSBTAG00000013946	PRPF3	90	100.000	ENSNLEG00000009841	PRPF3	100	100.000	Nomascus_leucogenys
ENSBTAG00000013946	PRPF3	83	100.000	ENSMEUG00000008733	PRPF3	89	100.000	Notamacropus_eugenii
ENSBTAG00000013946	PRPF3	100	99.414	ENSOPRG00000010139	PRPF3	100	99.414	Ochotona_princeps
ENSBTAG00000013946	PRPF3	100	73.768	ENSODEG00000014412	-	100	73.768	Octodon_degus
ENSBTAG00000013946	PRPF3	100	99.268	ENSODEG00000011363	-	100	99.268	Octodon_degus
ENSBTAG00000013946	PRPF3	100	70.646	ENSONIG00000006394	prpf3	99	70.506	Oreochromis_niloticus
ENSBTAG00000013946	PRPF3	100	65.462	ENSOANG00000015441	PRPF3	100	65.262	Ornithorhynchus_anatinus
ENSBTAG00000013946	PRPF3	100	100.000	ENSOCUG00000011760	PRPF3	100	100.000	Oryctolagus_cuniculus
ENSBTAG00000013946	PRPF3	100	72.650	ENSORLG00000010330	prpf3	99	71.755	Oryzias_latipes
ENSBTAG00000013946	PRPF3	100	72.650	ENSORLG00020009054	prpf3	99	71.755	Oryzias_latipes_hni
ENSBTAG00000013946	PRPF3	100	72.443	ENSORLG00015015016	prpf3	99	71.550	Oryzias_latipes_hsok
ENSBTAG00000013946	PRPF3	100	72.063	ENSOMEG00000000940	prpf3	99	71.777	Oryzias_melastigma
ENSBTAG00000013946	PRPF3	100	93.860	ENSOGAG00000005352	PRPF3	100	93.860	Otolemur_garnettii
ENSBTAG00000013946	PRPF3	100	100.000	ENSOARG00000020798	PRPF3	100	100.000	Ovis_aries
ENSBTAG00000013946	PRPF3	99	76.261	ENSPPAG00000043769	-	99	75.816	Pan_paniscus
ENSBTAG00000013946	PRPF3	100	99.854	ENSPPAG00000030983	PRPF3	100	99.854	Pan_paniscus
ENSBTAG00000013946	PRPF3	100	100.000	ENSPPRG00000000731	PRPF3	100	100.000	Panthera_pardus
ENSBTAG00000013946	PRPF3	100	100.000	ENSPTIG00000005516	PRPF3	100	100.000	Panthera_tigris_altaica
ENSBTAG00000013946	PRPF3	99	75.371	ENSPTRG00000047819	-	99	74.926	Pan_troglodytes
ENSBTAG00000013946	PRPF3	100	100.000	ENSPTRG00000001254	PRPF3	100	100.000	Pan_troglodytes
ENSBTAG00000013946	PRPF3	100	99.854	ENSPANG00000000499	PRPF3	100	99.854	Papio_anubis
ENSBTAG00000013946	PRPF3	100	74.322	ENSPKIG00000010501	prpf3	99	74.465	Paramormyrops_kingsleyae
ENSBTAG00000013946	PRPF3	100	96.053	ENSPSIG00000014877	PRPF3	100	95.906	Pelodiscus_sinensis
ENSBTAG00000013946	PRPF3	100	67.438	ENSPMGG00000007776	prpf3	99	66.570	Periophthalmus_magnuspinnatus
ENSBTAG00000013946	PRPF3	100	100.000	ENSPEMG00000011672	Prpf3	100	100.000	Peromyscus_maniculatus_bairdii
ENSBTAG00000013946	PRPF3	63	72.146	ENSPMAG00000005588	prpf3	99	69.757	Petromyzon_marinus
ENSBTAG00000013946	PRPF3	100	98.389	ENSPCIG00000008795	PRPF3	100	98.389	Phascolarctos_cinereus
ENSBTAG00000013946	PRPF3	100	72.380	ENSPFOG00000013638	prpf3	99	71.813	Poecilia_formosa
ENSBTAG00000013946	PRPF3	100	72.779	ENSPLAG00000018103	prpf3	99	72.159	Poecilia_latipinna
ENSBTAG00000013946	PRPF3	100	72.493	ENSPMEG00000023546	prpf3	99	72.206	Poecilia_mexicana
ENSBTAG00000013946	PRPF3	100	72.286	ENSPREG00000017216	prpf3	99	72.000	Poecilia_reticulata
ENSBTAG00000013946	PRPF3	75	87.549	ENSPPYG00000018646	-	100	87.549	Pongo_abelii
ENSBTAG00000013946	PRPF3	93	100.000	ENSPPYG00000000900	PRPF3	99	100.000	Pongo_abelii
ENSBTAG00000013946	PRPF3	87	98.985	ENSPCAG00000014908	PRPF3	87	98.985	Procavia_capensis
ENSBTAG00000013946	PRPF3	100	99.854	ENSPCOG00000013828	PRPF3	100	99.854	Propithecus_coquereli
ENSBTAG00000013946	PRPF3	100	98.829	ENSPVAG00000013472	PRPF3	100	98.829	Pteropus_vampyrus
ENSBTAG00000013946	PRPF3	100	72.727	ENSPNYG00000004279	prpf3	99	72.439	Pundamilia_nyererei
ENSBTAG00000013946	PRPF3	100	73.099	ENSPNAG00000001799	prpf3	99	73.239	Pygocentrus_nattereri
ENSBTAG00000013946	PRPF3	100	99.414	ENSRNOG00000025629	Prpf3	100	99.414	Rattus_norvegicus
ENSBTAG00000013946	PRPF3	86	96.454	ENSRBIG00000028854	PRPF3	98	96.454	Rhinopithecus_bieti
ENSBTAG00000013946	PRPF3	100	100.000	ENSRROG00000027464	PRPF3	100	100.000	Rhinopithecus_roxellana
ENSBTAG00000013946	PRPF3	100	92.972	ENSSBOG00000033104	PRPF3	100	92.972	Saimiri_boliviensis_boliviensis
ENSBTAG00000013946	PRPF3	100	98.246	ENSSHAG00000009548	PRPF3	100	98.246	Sarcophilus_harrisii
ENSBTAG00000013946	PRPF3	100	73.662	ENSSFOG00015022014	prpf3	99	73.239	Scleropages_formosus
ENSBTAG00000013946	PRPF3	100	71.950	ENSSMAG00000015739	prpf3	99	71.669	Scophthalmus_maximus
ENSBTAG00000013946	PRPF3	100	68.867	ENSSDUG00000006840	prpf3	99	68.867	Seriola_dumerili
ENSBTAG00000013946	PRPF3	100	70.769	ENSSLDG00000015423	prpf3	99	71.049	Seriola_lalandi_dorsalis
ENSBTAG00000013946	PRPF3	100	99.414	ENSSARG00000011064	PRPF3	100	99.414	Sorex_araneus
ENSBTAG00000013946	PRPF3	100	92.363	ENSSPUG00000000809	PRPF3	100	92.363	Sphenodon_punctatus
ENSBTAG00000013946	PRPF3	100	71.067	ENSSPAG00000018721	prpf3	99	71.994	Stegastes_partitus
ENSBTAG00000013946	PRPF3	100	100.000	ENSSSCG00000030119	PRPF3	100	100.000	Sus_scrofa
ENSBTAG00000013946	PRPF3	100	80.994	ENSTGUG00000004552	PRPF3	100	80.994	Taeniopygia_guttata
ENSBTAG00000013946	PRPF3	100	71.925	ENSTRUG00000014923	prpf3	99	71.635	Takifugu_rubripes
ENSBTAG00000013946	PRPF3	100	72.624	ENSTNIG00000008058	prpf3	100	71.449	Tetraodon_nigroviridis
ENSBTAG00000013946	PRPF3	82	100.000	ENSTBEG00000014072	PRPF3	88	100.000	Tupaia_belangeri
ENSBTAG00000013946	PRPF3	100	93.704	ENSTTRG00000010616	PRPF3	100	93.704	Tursiops_truncatus
ENSBTAG00000013946	PRPF3	80	100.000	ENSUAMG00000009345	PRPF3	100	100.000	Ursus_americanus
ENSBTAG00000013946	PRPF3	100	100.000	ENSUMAG00000003720	PRPF3	100	100.000	Ursus_maritimus
ENSBTAG00000013946	PRPF3	89	100.000	ENSVPAG00000005425	PRPF3	89	100.000	Vicugna_pacos
ENSBTAG00000013946	PRPF3	100	100.000	ENSVVUG00000007933	PRPF3	100	100.000	Vulpes_vulpes
ENSBTAG00000013946	PRPF3	100	87.808	ENSXETG00000018654	prpf3	100	87.808	Xenopus_tropicalis
ENSBTAG00000013946	PRPF3	100	72.493	ENSXMAG00000016347	prpf3	99	71.875	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	-	ISS	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0005634	nucleus	-	ISS	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISS	Component