EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSBTAG00000014060 (Gene tree)
Gene ID
615916
Gene Symbol
LSM6
Alias
-
Full Name
Bos taurus LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated (LSM6)%2C mRNA.
Gene Type
protein_coding
Species
Bos_taurus
Status
putative
Strand
Minus strand
Length
14983 bases
Position
chr17:12162216-12177198
Accession
NM_001114519
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSBTAP00000018681LSMPF01423.221.7e-1911
ENSBTAP00000063045LSMPF01423.222.8e-1911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSBTAT00000077566-306-ENSBTAP00000063045101 (aa)--
ENSBTAT00000018681-657-ENSBTAP0000001868180 (aa)-Q148G9
Gene Model
Click here to download ENSBTAG00000014060's gene model file
Pathways
Pathway IDPathway NameSource
bta03018RNA degradationKEGG
bta03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000014060's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSBTAG00000014060LSM69145.205ENSBTAG00000050012-9144.595
ENSBTAG00000014060LSM610093.750ENSBTAG00000052085-10093.750
ENSBTAG00000014060LSM69530.263ENSBTAG00000053210SNRPG9930.263
ENSBTAG00000014060LSM68351.515ENSBTAG00000016271SNRPF7850.746
ENSBTAG00000014060LSM67133.333ENSBTAG00000050695-8933.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSBTAG00000014060LSM6100100.000ENSG00000164167LSM6100100.000Homo_sapiens
ENSBTAG00000014060LSM610095.000ENSAPOG00000019832lsm610095.000Acanthochromis_polyacanthus
ENSBTAG00000014060LSM6100100.000ENSAMEG00000016671LSM6100100.000Ailuropoda_melanoleuca
ENSBTAG00000014060LSM610095.000ENSACIG00000016711lsm610095.000Amphilophus_citrinellus
ENSBTAG00000014060LSM610095.000ENSAOCG00000002110lsm65295.000Amphiprion_ocellaris
ENSBTAG00000014060LSM610095.000ENSAPEG00000023992lsm610095.000Amphiprion_percula
ENSBTAG00000014060LSM610095.000ENSATEG00000012610lsm610095.000Anabas_testudineus
ENSBTAG00000014060LSM696100.000ENSAPLG00000012594LSM699100.000Anas_platyrhynchos
ENSBTAG00000014060LSM6100100.000ENSACAG00000004004LSM6100100.000Anolis_carolinensis
ENSBTAG00000014060LSM6100100.000ENSANAG00000030568-100100.000Aotus_nancymaae
ENSBTAG00000014060LSM610086.250ENSANAG00000021839-10086.250Aotus_nancymaae
ENSBTAG00000014060LSM610095.000ENSACLG00000025621lsm610095.000Astatotilapia_calliptera
ENSBTAG00000014060LSM610096.250ENSAMXG00000038738lsm610096.250Astyanax_mexicanus
ENSBTAG00000014060LSM69481.333WBGene00003080lsm-69781.333Caenorhabditis_elegans
ENSBTAG00000014060LSM6100100.000ENSCJAG00000002482LSM6100100.000Callithrix_jacchus
ENSBTAG00000014060LSM6100100.000ENSCAFG00000007738LSM6100100.000Canis_familiaris
ENSBTAG00000014060LSM6100100.000ENSCAFG00020025902LSM6100100.000Canis_lupus_dingo
ENSBTAG00000014060LSM610083.750ENSCHIG00000024198-9981.928Capra_hircus
ENSBTAG00000014060LSM689100.000ENSCHIG00000012864-100100.000Capra_hircus
ENSBTAG00000014060LSM6100100.000ENSCHIG00000010334-100100.000Capra_hircus
ENSBTAG00000014060LSM69484.000ENSTSYG00000012759-8984.000Carlito_syrichta
ENSBTAG00000014060LSM6100100.000ENSTSYG00000026972LSM6100100.000Carlito_syrichta
ENSBTAG00000014060LSM68196.923ENSCAPG00000011179-10096.923Cavia_aperea
ENSBTAG00000014060LSM6100100.000ENSCAPG00000008104LSM6100100.000Cavia_aperea
ENSBTAG00000014060LSM6100100.000ENSCPOG00000032655LSM6100100.000Cavia_porcellus
ENSBTAG00000014060LSM6100100.000ENSCCAG00000036437LSM6100100.000Cebus_capucinus
ENSBTAG00000014060LSM69998.734ENSCCAG00000020665-9998.734Cebus_capucinus
ENSBTAG00000014060LSM610072.500ENSCATG00000038799-10072.500Cercocebus_atys
ENSBTAG00000014060LSM6100100.000ENSCATG00000002770-100100.000Cercocebus_atys
ENSBTAG00000014060LSM68980.282ENSCLAG00000005685-10080.282Chinchilla_lanigera
ENSBTAG00000014060LSM6100100.000ENSCLAG00000005495LSM6100100.000Chinchilla_lanigera
ENSBTAG00000014060LSM6100100.000ENSCSAG00000003421LSM6100100.000Chlorocebus_sabaeus
ENSBTAG00000014060LSM610078.750ENSCHOG00000003420LSM610078.750Choloepus_hoffmanni
ENSBTAG00000014060LSM6100100.000ENSCPBG00000027472LSM68997.647Chrysemys_picta_bellii
ENSBTAG00000014060LSM69596.053ENSCING00000019152-9396.053Ciona_intestinalis
ENSBTAG00000014060LSM69597.368ENSCSAVG00000002065-9397.368Ciona_savignyi
ENSBTAG00000014060LSM6100100.000ENSCANG00000041263-100100.000Colobus_angolensis_palliatus
ENSBTAG00000014060LSM610071.250ENSCANG00000035214-10071.250Colobus_angolensis_palliatus
ENSBTAG00000014060LSM6100100.000ENSCANG00000006849-100100.000Colobus_angolensis_palliatus
ENSBTAG00000014060LSM6100100.000ENSCGRG00001017142Lsm6100100.000Cricetulus_griseus_chok1gshd
ENSBTAG00000014060LSM6100100.000ENSCGRG00000008320Lsm6100100.000Cricetulus_griseus_crigri
ENSBTAG00000014060LSM610095.000ENSCSEG00000000423lsm610095.000Cynoglossus_semilaevis
ENSBTAG00000014060LSM610095.000ENSCVAG00000001592lsm610095.000Cyprinodon_variegatus
ENSBTAG00000014060LSM610096.250ENSDARG00000036995lsm610096.250Danio_rerio
ENSBTAG00000014060LSM686100.000ENSDNOG00000040186-74100.000Dasypus_novemcinctus
ENSBTAG00000014060LSM610098.750ENSDNOG00000044848-10098.750Dasypus_novemcinctus
ENSBTAG00000014060LSM6100100.000ENSDORG00000000933Lsm6100100.000Dipodomys_ordii
ENSBTAG00000014060LSM69685.714FBgn0034564CG93449785.714Drosophila_melanogaster
ENSBTAG00000014060LSM660100.000ENSETEG00000013098LSM6100100.000Echinops_telfairi
ENSBTAG00000014060LSM610098.750ENSEBUG00000017073lsm610098.750Eptatretus_burgeri
ENSBTAG00000014060LSM686100.000ENSEASG00005001533LSM672100.000Equus_asinus_asinus
ENSBTAG00000014060LSM6100100.000ENSECAG00000021036LSM6100100.000Equus_caballus
ENSBTAG00000014060LSM69972.152ENSEEUG00000002101LSM610072.152Erinaceus_europaeus
ENSBTAG00000014060LSM610096.250ENSELUG00000014301LSM610096.250Esox_lucius
ENSBTAG00000014060LSM6100100.000ENSFCAG00000003047LSM6100100.000Felis_catus
ENSBTAG00000014060LSM6100100.000ENSFALG00000005509LSM692100.000Ficedula_albicollis
ENSBTAG00000014060LSM610087.500ENSFDAG00000019073-10087.500Fukomys_damarensis
ENSBTAG00000014060LSM6100100.000ENSFDAG00000020913-100100.000Fukomys_damarensis
ENSBTAG00000014060LSM610095.000ENSFHEG00000007948lsm610095.000Fundulus_heteroclitus
ENSBTAG00000014060LSM610095.000ENSGMOG00000015550lsm610095.000Gadus_morhua
ENSBTAG00000014060LSM6100100.000ENSGALG00000009985LSM6100100.000Gallus_gallus
ENSBTAG00000014060LSM610095.000ENSGAFG00000017763lsm610095.000Gambusia_affinis
ENSBTAG00000014060LSM69996.203ENSGACG00000017223lsm69996.203Gasterosteus_aculeatus
ENSBTAG00000014060LSM6100100.000ENSGAGG00000020980LSM6100100.000Gopherus_agassizii
ENSBTAG00000014060LSM6100100.000ENSGGOG00000001310LSM6100100.000Gorilla_gorilla
ENSBTAG00000014060LSM610095.000ENSHBUG00000008618lsm610095.000Haplochromis_burtoni
ENSBTAG00000014060LSM6100100.000ENSHGLG00000000205LSM6100100.000Heterocephalus_glaber_female
ENSBTAG00000014060LSM6100100.000ENSHGLG00100014341LSM6100100.000Heterocephalus_glaber_male
ENSBTAG00000014060LSM610095.000ENSHCOG00000005591lsm610095.000Hippocampus_comes
ENSBTAG00000014060LSM610095.000ENSIPUG00000004508lsm610095.000Ictalurus_punctatus
ENSBTAG00000014060LSM6100100.000ENSSTOG00000002678LSM6100100.000Ictidomys_tridecemlineatus
ENSBTAG00000014060LSM69679.221ENSJJAG00000016942-9779.221Jaculus_jaculus
ENSBTAG00000014060LSM610090.000ENSJJAG00000011211-10090.000Jaculus_jaculus
ENSBTAG00000014060LSM6100100.000ENSJJAG00000013845-100100.000Jaculus_jaculus
ENSBTAG00000014060LSM610095.000ENSKMAG00000004105lsm610095.000Kryptolebias_marmoratus
ENSBTAG00000014060LSM610095.000ENSLBEG00000018441lsm610095.000Labrus_bergylta
ENSBTAG00000014060LSM6100100.000ENSLACG00000006937LSM6100100.000Latimeria_chalumnae
ENSBTAG00000014060LSM610095.000ENSLOCG00000017683-10095.000Lepisosteus_oculatus
ENSBTAG00000014060LSM610096.250ENSLOCG00000008852lsm610096.250Lepisosteus_oculatus
ENSBTAG00000014060LSM6100100.000ENSLAFG00000001952LSM6100100.000Loxodonta_africana
ENSBTAG00000014060LSM6100100.000ENSMFAG00000033073LSM6100100.000Macaca_fascicularis
ENSBTAG00000014060LSM610073.750ENSMNEG00000040412-10073.750Macaca_nemestrina
ENSBTAG00000014060LSM6100100.000ENSMNEG00000034820-100100.000Macaca_nemestrina
ENSBTAG00000014060LSM6100100.000ENSMLEG00000035153LSM6100100.000Mandrillus_leucophaeus
ENSBTAG00000014060LSM610095.000ENSMAMG00000014029lsm610095.000Mastacembelus_armatus
ENSBTAG00000014060LSM610095.000ENSMZEG00005009146lsm610095.000Maylandia_zebra
ENSBTAG00000014060LSM6100100.000ENSMGAG00000003802LSM6100100.000Meleagris_gallopavo
ENSBTAG00000014060LSM6100100.000ENSMAUG00000014938Lsm6100100.000Mesocricetus_auratus
ENSBTAG00000014060LSM69891.026ENSMICG00000047411-9291.026Microcebus_murinus
ENSBTAG00000014060LSM6100100.000ENSMICG00000042599LSM6100100.000Microcebus_murinus
ENSBTAG00000014060LSM6100100.000ENSMOCG00000020049Lsm6100100.000Microtus_ochrogaster
ENSBTAG00000014060LSM610095.000ENSMMOG00000005470lsm610095.000Mola_mola
ENSBTAG00000014060LSM610088.750ENSMMOG00000007379-10088.750Mola_mola
ENSBTAG00000014060LSM6100100.000ENSMODG00000000526LSM6100100.000Monodelphis_domestica
ENSBTAG00000014060LSM610095.000ENSMALG00000002419lsm610095.000Monopterus_albus
ENSBTAG00000014060LSM6100100.000MGP_CAROLIEiJ_G0031245Lsm6100100.000Mus_caroli
ENSBTAG00000014060LSM6100100.000ENSMUSG00000031683Lsm6100100.000Mus_musculus
ENSBTAG00000014060LSM6100100.000MGP_PahariEiJ_G0022851Lsm6100100.000Mus_pahari
ENSBTAG00000014060LSM6100100.000MGP_SPRETEiJ_G0032365Lsm6100100.000Mus_spretus
ENSBTAG00000014060LSM699100.000ENSMPUG00000006936LSM610097.674Mustela_putorius_furo
ENSBTAG00000014060LSM6100100.000ENSMLUG00000026355LSM6100100.000Myotis_lucifugus
ENSBTAG00000014060LSM6100100.000ENSNGAG00000019116Lsm6100100.000Nannospalax_galili
ENSBTAG00000014060LSM610095.000ENSNBRG00000004887lsm610095.000Neolamprologus_brichardi
ENSBTAG00000014060LSM6100100.000ENSNLEG00000005584LSM6100100.000Nomascus_leucogenys
ENSBTAG00000014060LSM610098.750ENSOPRG00000011199LSM610098.750Ochotona_princeps
ENSBTAG00000014060LSM610098.750ENSODEG00000002307-10098.750Octodon_degus
ENSBTAG00000014060LSM610097.500ENSODEG00000020420-10097.500Octodon_degus
ENSBTAG00000014060LSM69688.312ENSODEG00000018684-10088.312Octodon_degus
ENSBTAG00000014060LSM610096.250ENSODEG00000019419-10096.250Octodon_degus
ENSBTAG00000014060LSM610095.000ENSONIG00000010005lsm610095.000Oreochromis_niloticus
ENSBTAG00000014060LSM69874.359ENSOANG00000006895-10074.359Ornithorhynchus_anatinus
ENSBTAG00000014060LSM69874.359ENSOANG00000006894-10074.359Ornithorhynchus_anatinus
ENSBTAG00000014060LSM610093.750ENSORLG00000024158lsm610093.750Oryzias_latipes
ENSBTAG00000014060LSM610093.750ENSORLG00020017383lsm610093.750Oryzias_latipes_hni
ENSBTAG00000014060LSM610093.750ENSORLG00015016903lsm610093.750Oryzias_latipes_hsok
ENSBTAG00000014060LSM610095.000ENSOMEG00000000074lsm610095.000Oryzias_melastigma
ENSBTAG00000014060LSM6100100.000ENSOGAG00000026665-100100.000Otolemur_garnettii
ENSBTAG00000014060LSM6100100.000ENSOGAG00000033153-100100.000Otolemur_garnettii
ENSBTAG00000014060LSM686100.000ENSOARG00000008509-88100.000Ovis_aries
ENSBTAG00000014060LSM69993.671ENSOARG00000011641-10090.698Ovis_aries
ENSBTAG00000014060LSM6100100.000ENSPPAG00000037929LSM6100100.000Pan_paniscus
ENSBTAG00000014060LSM6100100.000ENSPPRG00000012806LSM6100100.000Panthera_pardus
ENSBTAG00000014060LSM6100100.000ENSPTIG00000019769LSM6100100.000Panthera_tigris_altaica
ENSBTAG00000014060LSM6100100.000ENSPTRG00000016488LSM6100100.000Pan_troglodytes
ENSBTAG00000014060LSM6100100.000ENSPANG00000006552LSM6100100.000Papio_anubis
ENSBTAG00000014060LSM610096.250ENSPKIG00000016176lsm610096.250Paramormyrops_kingsleyae
ENSBTAG00000014060LSM6100100.000ENSPSIG00000016942LSM6100100.000Pelodiscus_sinensis
ENSBTAG00000014060LSM610095.000ENSPMGG00000018004lsm610095.000Periophthalmus_magnuspinnatus
ENSBTAG00000014060LSM6100100.000ENSPEMG00000012410Lsm6100100.000Peromyscus_maniculatus_bairdii
ENSBTAG00000014060LSM610098.750ENSPMAG00000006949lsm610098.750Petromyzon_marinus
ENSBTAG00000014060LSM6100100.000ENSPCIG00000023469LSM680100.000Phascolarctos_cinereus
ENSBTAG00000014060LSM610095.000ENSPFOG00000008881lsm610095.000Poecilia_formosa
ENSBTAG00000014060LSM610095.000ENSPLAG00000003202lsm610095.000Poecilia_latipinna
ENSBTAG00000014060LSM610095.000ENSPMEG00000004000lsm610095.000Poecilia_mexicana
ENSBTAG00000014060LSM610095.000ENSPREG00000023235lsm610095.000Poecilia_reticulata
ENSBTAG00000014060LSM6100100.000ENSPPYG00000015105LSM6100100.000Pongo_abelii
ENSBTAG00000014060LSM6100100.000ENSPCOG00000013899LSM6100100.000Propithecus_coquereli
ENSBTAG00000014060LSM610095.000ENSPNYG00000012614lsm610095.000Pundamilia_nyererei
ENSBTAG00000014060LSM610096.250ENSPNAG00000018779lsm610096.250Pygocentrus_nattereri
ENSBTAG00000014060LSM6100100.000ENSRNOG00000049370LOC100360750100100.000Rattus_norvegicus
ENSBTAG00000014060LSM6100100.000ENSRNOG00000030374Lsm6100100.000Rattus_norvegicus
ENSBTAG00000014060LSM6100100.000ENSRBIG00000027878LSM6100100.000Rhinopithecus_bieti
ENSBTAG00000014060LSM6100100.000ENSRROG00000024868LSM6100100.000Rhinopithecus_roxellana
ENSBTAG00000014060LSM69541.250YDR378C-9345.000Saccharomyces_cerevisiae
ENSBTAG00000014060LSM610073.750ENSSBOG00000028103-10073.750Saimiri_boliviensis_boliviensis
ENSBTAG00000014060LSM6100100.000ENSSBOG00000021229-100100.000Saimiri_boliviensis_boliviensis
ENSBTAG00000014060LSM610096.250ENSSFOG00015016480lsm610096.250Scleropages_formosus
ENSBTAG00000014060LSM610095.000ENSSMAG00000004550lsm610095.000Scophthalmus_maximus
ENSBTAG00000014060LSM610095.000ENSSDUG00000020459lsm65095.000Seriola_dumerili
ENSBTAG00000014060LSM68697.101ENSSLDG00000004136-5997.101Seriola_lalandi_dorsalis
ENSBTAG00000014060LSM610095.000ENSSLDG00000020533lsm68395.000Seriola_lalandi_dorsalis
ENSBTAG00000014060LSM660100.000ENSSARG00000000689LSM6100100.000Sorex_araneus
ENSBTAG00000014060LSM6100100.000ENSSPUG00000008657LSM6100100.000Sphenodon_punctatus
ENSBTAG00000014060LSM610095.000ENSSPAG00000003246lsm610095.000Stegastes_partitus
ENSBTAG00000014060LSM6100100.000ENSSSCG00000035973LSM6100100.000Sus_scrofa
ENSBTAG00000014060LSM6100100.000ENSTGUG00000002663LSM6100100.000Taeniopygia_guttata
ENSBTAG00000014060LSM610095.000ENSTRUG00000023398lsm610095.000Takifugu_rubripes
ENSBTAG00000014060LSM610095.000ENSTNIG00000017725lsm610095.000Tetraodon_nigroviridis
ENSBTAG00000014060LSM6100100.000ENSTTRG00000004609LSM6100100.000Tursiops_truncatus
ENSBTAG00000014060LSM69891.026ENSUAMG00000014213LSM66491.026Ursus_americanus
ENSBTAG00000014060LSM69891.026ENSUMAG00000015727LSM66491.026Ursus_maritimus
ENSBTAG00000014060LSM6100100.000ENSVPAG00000006922LSM6100100.000Vicugna_pacos
ENSBTAG00000014060LSM6100100.000ENSVVUG00000009254LSM68389.691Vulpes_vulpes
ENSBTAG00000014060LSM6100100.000ENSXETG00000023683lsm6100100.000Xenopus_tropicalis
ENSBTAG00000014060LSM610095.000ENSXMAG00000009606lsm610095.000Xiphophorus_maculatus

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