EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000014377 (Gene tree)
Gene ID: 532673
Gene Symbol: CHD3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 23952 bases
Position: chr19:27570592-27594543
Accession: 27279
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000019119	ResIII	PF04851.15	2.3e-08	1	1
ENSBTAP00000061251	ResIII	PF04851.15	2.4e-08	1	1
ENSBTAP00000064494	ResIII	PF04851.15	2.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000019119	-	5919	-	ENSBTAP00000019119	1972 (aa)	-	F1N544
ENSBTAT00000080084	-	6189	-	ENSBTAP00000064494	2062 (aa)	-	-
ENSBTAT00000074066	-	6171	XM_024980751	ENSBTAP00000061251	2056 (aa)	XP_024836519	UPI000D53BE6D

Gene Model

Click here to download ENSBTAG00000014377's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000014377's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000014377	CHD3	90	71.548	ENSBTAG00000014734	CHD4	95	70.053
ENSBTAG00000014377	CHD3	92	68.881	ENSBTAG00000040477	CHD5	98	70.856

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000014377	CHD3	100	98.350	ENSG00000170004	CHD3	100	98.350	Homo_sapiens
ENSBTAG00000014377	CHD3	80	79.900	ENSAPOG00000005614	chd3	94	80.387	Acanthochromis_polyacanthus
ENSBTAG00000014377	CHD3	67	97.134	ENSAMEG00000003025	-	100	97.143	Ailuropoda_melanoleuca
ENSBTAG00000014377	CHD3	80	88.372	ENSACIG00000019671	chd3	99	79.986	Amphilophus_citrinellus
ENSBTAG00000014377	CHD3	80	81.335	ENSAOCG00000023784	chd3	97	81.910	Amphiprion_ocellaris
ENSBTAG00000014377	CHD3	76	77.567	ENSAPEG00000006341	chd3	96	73.570	Amphiprion_percula
ENSBTAG00000014377	CHD3	96	73.449	ENSATEG00000000848	chd3	95	81.675	Anabas_testudineus
ENSBTAG00000014377	CHD3	96	85.335	ENSACAG00000004276	CHD3	95	84.293	Anolis_carolinensis
ENSBTAG00000014377	CHD3	100	94.660	ENSANAG00000034323	CHD3	99	97.927	Aotus_nancymaae
ENSBTAG00000014377	CHD3	90	79.932	ENSACLG00000009222	chd3	99	73.622	Astatotilapia_calliptera
ENSBTAG00000014377	CHD3	100	98.010	ENSCJAG00000014766	CHD3	100	98.010	Callithrix_jacchus
ENSBTAG00000014377	CHD3	97	98.125	ENSCAFG00000016859	CHD3	98	98.121	Canis_familiaris
ENSBTAG00000014377	CHD3	93	97.934	ENSCAFG00020007422	CHD3	100	98.037	Canis_lupus_dingo
ENSBTAG00000014377	CHD3	97	99.167	ENSCHIG00000016737	CHD3	99	99.238	Capra_hircus
ENSBTAG00000014377	CHD3	97	98.021	ENSTSYG00000035658	CHD3	98	97.970	Carlito_syrichta
ENSBTAG00000014377	CHD3	97	94.852	ENSCAPG00000014864	CHD3	98	94.878	Cavia_aperea
ENSBTAG00000014377	CHD3	97	97.500	ENSCPOG00000022653	CHD3	98	97.461	Cavia_porcellus
ENSBTAG00000014377	CHD3	100	98.011	ENSCCAG00000034792	CHD3	100	98.011	Cebus_capucinus
ENSBTAG00000014377	CHD3	100	98.205	ENSCATG00000041717	CHD3	100	98.205	Cercocebus_atys
ENSBTAG00000014377	CHD3	97	98.073	ENSCLAG00000010523	CHD3	100	98.069	Chinchilla_lanigera
ENSBTAG00000014377	CHD3	97	98.486	ENSCSAG00000011122	CHD3	99	98.474	Chlorocebus_sabaeus
ENSBTAG00000014377	CHD3	86	86.447	ENSCPBG00000011966	CHD3	99	86.572	Chrysemys_picta_bellii
ENSBTAG00000014377	CHD3	97	98.229	ENSCANG00000037641	CHD3	98	98.223	Colobus_angolensis_palliatus
ENSBTAG00000014377	CHD3	97	96.825	ENSCGRG00001011306	Chd3	100	96.750	Cricetulus_griseus_chok1gshd
ENSBTAG00000014377	CHD3	91	97.638	ENSCGRG00000007878	Chd3	99	97.794	Cricetulus_griseus_crigri
ENSBTAG00000014377	CHD3	88	83.712	ENSCSEG00000004489	chd3	98	78.114	Cynoglossus_semilaevis
ENSBTAG00000014377	CHD3	87	83.468	ENSCVAG00000007293	chd3	95	83.468	Cyprinodon_variegatus
ENSBTAG00000014377	CHD3	86	87.259	ENSDARG00000021405	chd3	99	75.826	Danio_rerio
ENSBTAG00000014377	CHD3	97	83.195	ENSDNOG00000047846	CHD3	98	83.510	Dasypus_novemcinctus
ENSBTAG00000014377	CHD3	97	97.396	ENSDORG00000010713	Chd3	100	97.409	Dipodomys_ordii
ENSBTAG00000014377	CHD3	97	91.714	ENSETEG00000017733	CHD3	100	91.649	Echinops_telfairi
ENSBTAG00000014377	CHD3	54	77.758	ENSEBUG00000008310	chd3	99	70.351	Eptatretus_burgeri
ENSBTAG00000014377	CHD3	91	98.162	ENSEASG00005019360	CHD3	100	98.092	Equus_asinus_asinus
ENSBTAG00000014377	CHD3	91	98.217	ENSECAG00000010051	CHD3	100	98.146	Equus_caballus
ENSBTAG00000014377	CHD3	89	94.915	ENSEEUG00000015205	CHD3	92	96.154	Erinaceus_europaeus
ENSBTAG00000014377	CHD3	81	77.512	ENSELUG00000019499	chd3	99	77.528	Esox_lucius
ENSBTAG00000014377	CHD3	100	97.671	ENSFCAG00000009629	CHD3	100	97.671	Felis_catus
ENSBTAG00000014377	CHD3	97	95.521	ENSFDAG00000008220	CHD3	99	95.531	Fukomys_damarensis
ENSBTAG00000014377	CHD3	87	80.305	ENSGMOG00000013599	chd3	91	80.914	Gadus_morhua
ENSBTAG00000014377	CHD3	59	75.815	ENSGAFG00000004055	chd3	99	76.415	Gambusia_affinis
ENSBTAG00000014377	CHD3	96	70.949	ENSGACG00000019275	chd3	100	71.026	Gasterosteus_aculeatus
ENSBTAG00000014377	CHD3	75	86.364	ENSGAGG00000013164	CHD3	97	86.499	Gopherus_agassizii
ENSBTAG00000014377	CHD3	97	98.281	ENSGGOG00000013496	CHD3	98	98.274	Gorilla_gorilla
ENSBTAG00000014377	CHD3	99	97.613	ENSHGLG00000012017	CHD3	100	97.613	Heterocephalus_glaber_female
ENSBTAG00000014377	CHD3	87	90.644	ENSHGLG00100013902	CHD3	99	90.883	Heterocephalus_glaber_male
ENSBTAG00000014377	CHD3	94	72.559	ENSHCOG00000010170	chd3	96	73.032	Hippocampus_comes
ENSBTAG00000014377	CHD3	84	80.865	ENSIPUG00000003271	chd3	94	80.265	Ictalurus_punctatus
ENSBTAG00000014377	CHD3	97	97.969	ENSSTOG00000025907	CHD3	99	97.969	Ictidomys_tridecemlineatus
ENSBTAG00000014377	CHD3	97	97.135	ENSJJAG00000017633	Chd3	100	97.002	Jaculus_jaculus
ENSBTAG00000014377	CHD3	86	90.521	ENSKMAG00000019292	chd3	97	74.563	Kryptolebias_marmoratus
ENSBTAG00000014377	CHD3	87	88.261	ENSLBEG00000028485	chd3	91	88.261	Labrus_bergylta
ENSBTAG00000014377	CHD3	96	73.828	ENSLACG00000008031	CHD3	98	74.078	Latimeria_chalumnae
ENSBTAG00000014377	CHD3	96	77.413	ENSLOCG00000013965	chd3	97	77.767	Lepisosteus_oculatus
ENSBTAG00000014377	CHD3	95	94.397	ENSLAFG00000000572	CHD3	100	94.427	Loxodonta_africana
ENSBTAG00000014377	CHD3	97	98.333	ENSMFAG00000020113	CHD3	98	98.325	Macaca_fascicularis
ENSBTAG00000014377	CHD3	97	95.938	ENSMMUG00000022221	CHD3	99	95.303	Macaca_mulatta
ENSBTAG00000014377	CHD3	97	98.229	ENSMNEG00000001728	CHD3	99	97.653	Macaca_nemestrina
ENSBTAG00000014377	CHD3	97	98.281	ENSMLEG00000032249	CHD3	98	98.274	Mandrillus_leucophaeus
ENSBTAG00000014377	CHD3	86	76.115	ENSMAMG00000000564	chd3	99	76.377	Mastacembelus_armatus
ENSBTAG00000014377	CHD3	97	96.825	ENSMAUG00000013873	Chd3	99	93.989	Mesocricetus_auratus
ENSBTAG00000014377	CHD3	100	97.767	ENSMICG00000008741	CHD3	100	97.767	Microcebus_murinus
ENSBTAG00000014377	CHD3	97	97.085	ENSMOCG00000004848	Chd3	100	96.997	Microtus_ochrogaster
ENSBTAG00000014377	CHD3	95	74.194	ENSMMOG00000012699	chd3	99	73.526	Mola_mola
ENSBTAG00000014377	CHD3	91	92.913	ENSMODG00000007509	CHD3	100	92.682	Monodelphis_domestica
ENSBTAG00000014377	CHD3	98	96.282	MGP_CAROLIEiJ_G0016564	Chd3	100	95.263	Mus_caroli
ENSBTAG00000014377	CHD3	100	96.219	ENSMUSG00000018474	Chd3	100	96.219	Mus_musculus
ENSBTAG00000014377	CHD3	99	96.451	MGP_PahariEiJ_G0017695	Chd3	100	96.451	Mus_pahari
ENSBTAG00000014377	CHD3	100	96.171	MGP_SPRETEiJ_G0017400	Chd3	100	96.171	Mus_spretus
ENSBTAG00000014377	CHD3	85	97.791	ENSMPUG00000008861	CHD3	100	97.783	Mustela_putorius_furo
ENSBTAG00000014377	CHD3	97	97.135	ENSMLUG00000014643	-	98	97.156	Myotis_lucifugus
ENSBTAG00000014377	CHD3	97	97.292	ENSNGAG00000000773	Chd3	98	97.207	Nannospalax_galili
ENSBTAG00000014377	CHD3	86	75.264	ENSNBRG00000000636	chd3	97	75.955	Neolamprologus_brichardi
ENSBTAG00000014377	CHD3	97	95.729	ENSNLEG00000009770	CHD3	100	95.176	Nomascus_leucogenys
ENSBTAG00000014377	CHD3	83	90.491	ENSMEUG00000005852	CHD3	87	90.151	Notamacropus_eugenii
ENSBTAG00000014377	CHD3	94	95.847	ENSOPRG00000011069	CHD3	100	96.211	Ochotona_princeps
ENSBTAG00000014377	CHD3	97	97.552	ENSODEG00000017785	CHD3	99	97.562	Octodon_degus
ENSBTAG00000014377	CHD3	96	74.302	ENSONIG00000009292	chd3	100	75.090	Oreochromis_niloticus
ENSBTAG00000014377	CHD3	97	93.202	ENSOCUG00000029299	CHD3	100	93.086	Oryctolagus_cuniculus
ENSBTAG00000014377	CHD3	83	70.507	ENSORLG00000007107	chd3	93	70.560	Oryzias_latipes
ENSBTAG00000014377	CHD3	57	73.074	ENSORLG00020008387	chd3	95	73.605	Oryzias_latipes_hni
ENSBTAG00000014377	CHD3	70	80.731	ENSOMEG00000013691	chd3	99	77.355	Oryzias_melastigma
ENSBTAG00000014377	CHD3	97	97.708	ENSOGAG00000003216	CHD3	99	97.664	Otolemur_garnettii
ENSBTAG00000014377	CHD3	97	97.185	ENSOARG00000017855	CHD3	99	97.306	Ovis_aries
ENSBTAG00000014377	CHD3	97	95.998	ENSPPAG00000032886	CHD3	98	96.048	Pan_paniscus
ENSBTAG00000014377	CHD3	98	97.580	ENSPPRG00000000626	CHD3	100	97.580	Panthera_pardus
ENSBTAG00000014377	CHD3	100	98.447	ENSPTRG00000008714	CHD3	100	98.447	Pan_troglodytes
ENSBTAG00000014377	CHD3	100	96.652	ENSPANG00000023938	CHD3	100	96.652	Papio_anubis
ENSBTAG00000014377	CHD3	93	79.952	ENSPKIG00000006305	chd3	99	79.102	Paramormyrops_kingsleyae
ENSBTAG00000014377	CHD3	55	90.568	ENSPSIG00000010177	CHD3	98	90.751	Pelodiscus_sinensis
ENSBTAG00000014377	CHD3	97	96.877	ENSPEMG00000014262	Chd3	99	96.601	Peromyscus_maniculatus_bairdii
ENSBTAG00000014377	CHD3	97	93.271	ENSPCIG00000005442	CHD3	98	95.092	Phascolarctos_cinereus
ENSBTAG00000014377	CHD3	96	73.228	ENSPFOG00000012464	chd3	92	74.005	Poecilia_formosa
ENSBTAG00000014377	CHD3	87	83.871	ENSPLAG00000002887	chd3	96	83.871	Poecilia_latipinna
ENSBTAG00000014377	CHD3	53	81.607	ENSPMEG00000016725	chd3	94	73.067	Poecilia_mexicana
ENSBTAG00000014377	CHD3	91	81.533	ENSPREG00000011044	chd3	99	78.660	Poecilia_reticulata
ENSBTAG00000014377	CHD3	96	95.349	ENSPPYG00000007940	CHD3	98	95.391	Pongo_abelii
ENSBTAG00000014377	CHD3	94	98.035	ENSPCAG00000004350	CHD3	96	97.871	Procavia_capensis
ENSBTAG00000014377	CHD3	99	97.714	ENSPCOG00000020952	CHD3	100	97.714	Propithecus_coquereli
ENSBTAG00000014377	CHD3	84	97.415	ENSPVAG00000016344	CHD3	87	97.416	Pteropus_vampyrus
ENSBTAG00000014377	CHD3	97	78.236	ENSPNAG00000020393	chd3	99	80.447	Pygocentrus_nattereri
ENSBTAG00000014377	CHD3	91	96.492	ENSRNOG00000009722	Chd3	100	95.972	Rattus_norvegicus
ENSBTAG00000014377	CHD3	97	95.116	ENSRBIG00000033562	CHD3	99	94.669	Rhinopithecus_bieti
ENSBTAG00000014377	CHD3	97	96.603	ENSRROG00000029554	CHD3	100	96.237	Rhinopithecus_roxellana
ENSBTAG00000014377	CHD3	97	98.281	ENSSBOG00000020719	CHD3	99	97.653	Saimiri_boliviensis_boliviensis
ENSBTAG00000014377	CHD3	97	92.764	ENSSHAG00000014412	CHD3	100	92.606	Sarcophilus_harrisii
ENSBTAG00000014377	CHD3	88	79.915	ENSSFOG00015023123	chd3	98	74.293	Scleropages_formosus
ENSBTAG00000014377	CHD3	81	91.358	ENSSMAG00000006451	chd3	99	75.677	Scophthalmus_maximus
ENSBTAG00000014377	CHD3	55	73.211	ENSSDUG00000005792	chd3	95	73.486	Seriola_dumerili
ENSBTAG00000014377	CHD3	80	79.986	ENSSPAG00000013694	chd3	98	80.331	Stegastes_partitus
ENSBTAG00000014377	CHD3	97	98.643	ENSSSCG00000021363	CHD3	100	98.525	Sus_scrofa
ENSBTAG00000014377	CHD3	75	76.764	ENSTRUG00000014990	chd3	89	76.439	Takifugu_rubripes
ENSBTAG00000014377	CHD3	95	73.824	ENSTNIG00000012998	chd3	99	72.372	Tetraodon_nigroviridis
ENSBTAG00000014377	CHD3	63	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
ENSBTAG00000014377	CHD3	96	98.961	ENSTTRG00000010295	CHD3	97	98.923	Tursiops_truncatus
ENSBTAG00000014377	CHD3	91	96.832	ENSUAMG00000005475	CHD3	99	96.844	Ursus_americanus
ENSBTAG00000014377	CHD3	55	98.148	ENSVPAG00000010794	-	62	98.148	Vicugna_pacos
ENSBTAG00000014377	CHD3	95	98.083	ENSVVUG00000028011	CHD3	99	97.923	Vulpes_vulpes
ENSBTAG00000014377	CHD3	96	73.447	ENSXETG00000012991	chd3	92	73.947	Xenopus_tropicalis
ENSBTAG00000014377	CHD3	51	83.089	ENSXCOG00000000809	chd3	96	82.976	Xiphophorus_couchianus
ENSBTAG00000014377	CHD3	79	86.127	ENSXMAG00000016035	chd3	99	86.127	Xiphophorus_maculatus