EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000014490 (Gene tree)
Gene ID: 540191
Gene Symbol: DDX39B
Alias: -
Full Name: DExD-box helicase 39B
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 13642 bases
Position: chr23:27748035-27761676
Accession: 27965
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000029090	ResIII	PF04851.15	2.5e-07	1	1
ENSBTAP00000067484	ResIII	PF04851.15	2.5e-07	1	1
ENSBTAP00000029090	DEAD	PF00270.29	9.8e-39	1	1
ENSBTAP00000067484	DEAD	PF00270.29	9.8e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000069569	-	4501	-	ENSBTAP00000067484	428 (aa)	XP_010816658	UPI00004EE19D
ENSBTAT00000029090	-	4388	-	ENSBTAP00000029090	428 (aa)	XP_010816658	Q3T147

Gene Model

Click here to download ENSBTAG00000014490's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000014490's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000014490	DDX39B	85	38.082	ENSBTAG00000016023	EIF4A3	88	38.082
ENSBTAG00000014490	DDX39B	86	39.189	ENSBTAG00000014724	EIF4A2	90	39.189
ENSBTAG00000014490	DDX39B	77	30.029	ENSBTAG00000018423	DDX5	55	30.029
ENSBTAG00000014490	DDX39B	87	30.079	ENSBTAG00000020563	DDX59	60	30.079
ENSBTAG00000014490	DDX39B	93	93.451	ENSBTAG00000021820	DDX39A	100	90.888
ENSBTAG00000014490	DDX39B	92	36.802	ENSBTAG00000000132	EIF4A1	95	36.802
ENSBTAG00000014490	DDX39B	84	31.367	ENSBTAG00000004266	DDX25	82	31.527
ENSBTAG00000014490	DDX39B	91	32.581	ENSBTAG00000003570	DDX19A	86	32.581
ENSBTAG00000014490	DDX39B	87	30.446	ENSBTAG00000021058	DDX42	50	30.959
ENSBTAG00000014490	DDX39B	82	35.311	ENSBTAG00000019608	DDX47	75	35.447
ENSBTAG00000014490	DDX39B	87	32.283	ENSBTAG00000000811	DDX49	78	32.283
ENSBTAG00000014490	DDX39B	91	32.832	ENSBTAG00000020714	DDX19B	81	32.832
ENSBTAG00000014490	DDX39B	99	34.033	ENSBTAG00000009067	DDX6	83	35.825

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000014490	DDX39B	100	99.766	ENSG00000198563	DDX39B	100	100.000	Homo_sapiens
ENSBTAG00000014490	DDX39B	100	99.533	ENSAMEG00000009508	DDX39B	99	99.533	Ailuropoda_melanoleuca
ENSBTAG00000014490	DDX39B	99	93.677	ENSACIG00000004534	ddx39b	98	93.677	Amphilophus_citrinellus
ENSBTAG00000014490	DDX39B	100	92.824	ENSATEG00000012366	ddx39b	100	92.824	Anabas_testudineus
ENSBTAG00000014490	DDX39B	100	97.436	ENSACAG00000012240	DDX39B	100	97.436	Anolis_carolinensis
ENSBTAG00000014490	DDX39B	100	99.766	ENSANAG00000030372	DDX39B	100	99.766	Aotus_nancymaae
ENSBTAG00000014490	DDX39B	99	90.783	ENSACLG00000018759	ddx39b	99	90.783	Astatotilapia_calliptera
ENSBTAG00000014490	DDX39B	100	92.431	ENSAMXG00000017837	ddx39b	100	92.431	Astyanax_mexicanus
ENSBTAG00000014490	DDX39B	100	99.766	ENSCJAG00000003152	DDX39B	100	99.766	Callithrix_jacchus
ENSBTAG00000014490	DDX39B	100	99.299	ENSCAFG00000000509	DDX39B	100	99.677	Canis_familiaris
ENSBTAG00000014490	DDX39B	100	99.299	ENSCAFG00020020530	DDX39B	100	99.299	Canis_lupus_dingo
ENSBTAG00000014490	DDX39B	100	100.000	ENSCHIG00000004579	DDX39B	100	100.000	Capra_hircus
ENSBTAG00000014490	DDX39B	100	99.766	ENSTSYG00000010226	-	100	99.766	Carlito_syrichta
ENSBTAG00000014490	DDX39B	100	85.047	ENSTSYG00000029741	-	91	87.619	Carlito_syrichta
ENSBTAG00000014490	DDX39B	100	99.533	ENSCAPG00000010066	DDX39B	100	99.533	Cavia_aperea
ENSBTAG00000014490	DDX39B	100	99.533	ENSCPOG00000002335	DDX39B	100	99.533	Cavia_porcellus
ENSBTAG00000014490	DDX39B	100	99.766	ENSCCAG00000027897	DDX39B	100	99.766	Cebus_capucinus
ENSBTAG00000014490	DDX39B	99	90.118	ENSCATG00000043709	DDX39B	99	90.118	Cercocebus_atys
ENSBTAG00000014490	DDX39B	100	99.533	ENSCLAG00000014555	DDX39B	100	99.533	Chinchilla_lanigera
ENSBTAG00000014490	DDX39B	99	99.529	ENSCSAG00000008517	DDX39B	100	99.529	Chlorocebus_sabaeus
ENSBTAG00000014490	DDX39B	64	100.000	ENSCPBG00000014671	-	100	100.000	Chrysemys_picta_bellii
ENSBTAG00000014490	DDX39B	100	99.766	ENSCANG00000041217	DDX39B	100	99.766	Colobus_angolensis_palliatus
ENSBTAG00000014490	DDX39B	83	84.078	ENSCGRG00001021916	-	89	84.078	Cricetulus_griseus_chok1gshd
ENSBTAG00000014490	DDX39B	57	98.776	ENSCGRG00001017315	-	95	98.544	Cricetulus_griseus_chok1gshd
ENSBTAG00000014490	DDX39B	57	98.776	ENSCGRG00000012479	-	76	98.776	Cricetulus_griseus_crigri
ENSBTAG00000014490	DDX39B	100	92.414	ENSDARG00000036069	ddx39b	100	92.644	Danio_rerio
ENSBTAG00000014490	DDX39B	100	99.766	ENSDNOG00000010215	DDX39B	100	99.766	Dasypus_novemcinctus
ENSBTAG00000014490	DDX39B	87	99.465	ENSDORG00000004985	Ddx39b	100	99.465	Dipodomys_ordii
ENSBTAG00000014490	DDX39B	87	86.631	ENSETEG00000009649	DDX39B	87	86.631	Echinops_telfairi
ENSBTAG00000014490	DDX39B	100	99.766	ENSEASG00005017156	DDX39B	100	99.766	Equus_asinus_asinus
ENSBTAG00000014490	DDX39B	100	99.766	ENSECAG00000007750	DDX39B	100	99.766	Equus_caballus
ENSBTAG00000014490	DDX39B	100	92.343	ENSELUG00000017904	ddx39b	100	92.343	Esox_lucius
ENSBTAG00000014490	DDX39B	100	99.533	ENSFCAG00000004497	DDX39B	100	99.533	Felis_catus
ENSBTAG00000014490	DDX39B	100	99.533	ENSFDAG00000011074	DDX39B	100	99.533	Fukomys_damarensis
ENSBTAG00000014490	DDX39B	74	100.000	ENSGAGG00000001300	-	80	100.000	Gopherus_agassizii
ENSBTAG00000014490	DDX39B	100	99.766	ENSGGOG00000005989	DDX39B	100	99.766	Gorilla_gorilla
ENSBTAG00000014490	DDX39B	100	99.065	ENSHGLG00000019248	DDX39B	100	99.065	Heterocephalus_glaber_female
ENSBTAG00000014490	DDX39B	100	99.065	ENSHGLG00100011850	DDX39B	100	99.065	Heterocephalus_glaber_male
ENSBTAG00000014490	DDX39B	100	91.284	ENSIPUG00000015733	DDX39B	94	91.743	Ictalurus_punctatus
ENSBTAG00000014490	DDX39B	100	99.299	ENSSTOG00000012838	DDX39B	100	99.299	Ictidomys_tridecemlineatus
ENSBTAG00000014490	DDX39B	100	99.065	ENSJJAG00000005660	-	100	99.065	Jaculus_jaculus
ENSBTAG00000014490	DDX39B	66	79.078	ENSLBEG00000017177	-	85	75.102	Labrus_bergylta
ENSBTAG00000014490	DDX39B	99	78.251	ENSLBEG00000012254	ddx39b	99	78.220	Labrus_bergylta
ENSBTAG00000014490	DDX39B	100	89.862	ENSLACG00000002110	DDX39B	100	89.862	Latimeria_chalumnae
ENSBTAG00000014490	DDX39B	100	99.533	ENSLAFG00000014202	DDX39B	100	99.533	Loxodonta_africana
ENSBTAG00000014490	DDX39B	100	99.766	ENSMFAG00000034233	DDX39B	100	99.766	Macaca_fascicularis
ENSBTAG00000014490	DDX39B	100	99.766	ENSMMUG00000008839	DDX39B	100	99.766	Macaca_mulatta
ENSBTAG00000014490	DDX39B	100	99.766	ENSMNEG00000041059	DDX39B	100	99.766	Macaca_nemestrina
ENSBTAG00000014490	DDX39B	100	99.766	ENSMLEG00000043791	DDX39B	100	99.766	Mandrillus_leucophaeus
ENSBTAG00000014490	DDX39B	99	90.783	ENSMZEG00005017654	ddx39b	99	90.783	Maylandia_zebra
ENSBTAG00000014490	DDX39B	100	99.065	ENSMAUG00000008059	Ddx39b	100	99.065	Mesocricetus_auratus
ENSBTAG00000014490	DDX39B	100	99.766	ENSMICG00000017349	DDX39B	100	99.766	Microcebus_murinus
ENSBTAG00000014490	DDX39B	100	99.299	ENSMOCG00000011169	Ddx39b	100	99.299	Microtus_ochrogaster
ENSBTAG00000014490	DDX39B	88	99.468	ENSMODG00000015791	DDX39B	88	99.468	Monodelphis_domestica
ENSBTAG00000014490	DDX39B	100	99.299	ENSMUSG00000019432	Ddx39b	100	99.324	Mus_musculus
ENSBTAG00000014490	DDX39B	100	99.299	MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	Mus_pahari
ENSBTAG00000014490	DDX39B	100	99.299	MGP_SPRETEiJ_G0022424	Ddx39b	100	99.299	Mus_spretus
ENSBTAG00000014490	DDX39B	100	99.533	ENSMPUG00000011407	DDX39B	100	99.533	Mustela_putorius_furo
ENSBTAG00000014490	DDX39B	73	99.678	ENSMLUG00000001681	DDX39B	100	99.678	Myotis_lucifugus
ENSBTAG00000014490	DDX39B	100	99.766	ENSNGAG00000022948	Ddx39b	100	99.766	Nannospalax_galili
ENSBTAG00000014490	DDX39B	100	75.467	ENSNLEG00000006094	DDX39B	100	75.467	Nomascus_leucogenys
ENSBTAG00000014490	DDX39B	86	100.000	ENSMEUG00000008264	DDX39B	86	100.000	Notamacropus_eugenii
ENSBTAG00000014490	DDX39B	100	99.533	ENSOPRG00000011923	DDX39B	100	99.533	Ochotona_princeps
ENSBTAG00000014490	DDX39B	100	99.299	ENSODEG00000018083	DDX39B	100	99.299	Octodon_degus
ENSBTAG00000014490	DDX39B	100	91.898	ENSONIG00000004740	ddx39b	100	91.898	Oreochromis_niloticus
ENSBTAG00000014490	DDX39B	55	98.734	ENSOANG00000008361	DDX39B	95	98.734	Ornithorhynchus_anatinus
ENSBTAG00000014490	DDX39B	100	95.937	ENSOCUG00000024126	DDX39B	100	95.937	Oryctolagus_cuniculus
ENSBTAG00000014490	DDX39B	100	98.368	ENSOGAG00000028850	-	100	98.368	Otolemur_garnettii
ENSBTAG00000014490	DDX39B	84	91.444	ENSOGAG00000009067	-	100	98.148	Otolemur_garnettii
ENSBTAG00000014490	DDX39B	100	100.000	ENSOARG00000008787	DDX39B	98	100.000	Ovis_aries
ENSBTAG00000014490	DDX39B	100	99.766	ENSPPAG00000043072	DDX39B	100	99.766	Pan_paniscus
ENSBTAG00000014490	DDX39B	100	99.533	ENSPPRG00000001913	DDX39B	100	99.533	Panthera_pardus
ENSBTAG00000014490	DDX39B	100	98.598	ENSPTIG00000017669	DDX39B	100	98.598	Panthera_tigris_altaica
ENSBTAG00000014490	DDX39B	100	99.766	ENSPTRG00000032509	DDX39B	100	99.766	Pan_troglodytes
ENSBTAG00000014490	DDX39B	100	99.766	ENSPANG00000018609	DDX39B	100	99.766	Papio_anubis
ENSBTAG00000014490	DDX39B	100	90.847	ENSPKIG00000011324	ddx39b	100	91.533	Paramormyrops_kingsleyae
ENSBTAG00000014490	DDX39B	100	99.065	ENSPEMG00000016905	Ddx39b	100	99.065	Peromyscus_maniculatus_bairdii
ENSBTAG00000014490	DDX39B	100	99.766	ENSPCIG00000017572	DDX39B	100	99.766	Phascolarctos_cinereus
ENSBTAG00000014490	DDX39B	100	99.766	ENSPPYG00000016433	DDX39B	100	99.766	Pongo_abelii
ENSBTAG00000014490	DDX39B	66	99.648	ENSPCAG00000003484	DDX39B	100	99.648	Procavia_capensis
ENSBTAG00000014490	DDX39B	100	99.766	ENSPCOG00000018656	DDX39B	100	99.766	Propithecus_coquereli
ENSBTAG00000014490	DDX39B	100	99.299	ENSPVAG00000004653	DDX39B	100	99.299	Pteropus_vampyrus
ENSBTAG00000014490	DDX39B	99	82.904	ENSPNYG00000010382	ddx39b	98	82.904	Pundamilia_nyererei
ENSBTAG00000014490	DDX39B	100	92.202	ENSPNAG00000026926	ddx39b	100	92.202	Pygocentrus_nattereri
ENSBTAG00000014490	DDX39B	100	99.299	ENSRNOG00000000841	Ddx39b	100	99.299	Rattus_norvegicus
ENSBTAG00000014490	DDX39B	100	89.486	ENSRBIG00000031309	DDX39B	100	89.486	Rhinopithecus_bieti
ENSBTAG00000014490	DDX39B	100	99.766	ENSRROG00000039517	DDX39B	100	99.766	Rhinopithecus_roxellana
ENSBTAG00000014490	DDX39B	100	89.486	ENSSBOG00000035513	-	100	89.486	Saimiri_boliviensis_boliviensis
ENSBTAG00000014490	DDX39B	100	99.766	ENSSHAG00000003209	DDX39B	100	99.766	Sarcophilus_harrisii
ENSBTAG00000014490	DDX39B	100	91.076	ENSSFOG00015016107	ddx39b	100	91.762	Scleropages_formosus
ENSBTAG00000014490	DDX39B	100	93.287	ENSSDUG00000011557	ddx39b	100	93.519	Seriola_dumerili
ENSBTAG00000014490	DDX39B	100	93.056	ENSSLDG00000015763	ddx39b	100	93.287	Seriola_lalandi_dorsalis
ENSBTAG00000014490	DDX39B	87	87.433	ENSSARG00000005245	DDX39B	100	87.433	Sorex_araneus
ENSBTAG00000014490	DDX39B	100	98.131	ENSSPUG00000012805	DDX39B	100	98.131	Sphenodon_punctatus
ENSBTAG00000014490	DDX39B	100	99.766	ENSSSCG00000001400	DDX39B	100	99.711	Sus_scrofa
ENSBTAG00000014490	DDX39B	100	76.869	ENSTBEG00000003721	DDX39B	100	76.869	Tupaia_belangeri
ENSBTAG00000014490	DDX39B	100	91.224	ENSTTRG00000014074	DDX39B	100	91.224	Tursiops_truncatus
ENSBTAG00000014490	DDX39B	100	86.744	ENSUAMG00000027335	DDX39B	100	86.744	Ursus_americanus
ENSBTAG00000014490	DDX39B	100	90.654	ENSUMAG00000015124	DDX39B	100	90.654	Ursus_maritimus
ENSBTAG00000014490	DDX39B	61	100.000	ENSVPAG00000009167	-	74	100.000	Vicugna_pacos
ENSBTAG00000014490	DDX39B	100	99.299	ENSVVUG00000019518	DDX39B	99	99.299	Vulpes_vulpes
ENSBTAG00000014490	DDX39B	100	84.186	ENSXETG00000002498	ddx39b	99	84.186	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006406	mRNA export from nucleus	-	ISS	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISS	Process
GO:2000002	negative regulation of DNA damage checkpoint	-	ISS	Process