EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000014683 (Gene tree)
Gene ID: 516043
Gene Symbol: APOBEC1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 5850 bases
Position: chr5:101268561-101274410
Accession: 26027
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000019544	APOBEC_N	PF08210.11	2e-28	1	1
ENSBTAP00000019544	APOBEC_C	PF05240.14	4.2e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000019544	-	1135	-	ENSBTAP00000019544	236 (aa)	XP_002687863	E1BP99

Gene Model

Click here to download ENSBTAG00000014683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000014683's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000014683	APOBEC1	61	33.974	ENSBTAG00000007755	APOBEC3H	73	33.974

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000014683	APOBEC1	100	72.881	ENSG00000111701	APOBEC1	100	72.881	Homo_sapiens
ENSBTAG00000014683	APOBEC1	98	74.892	ENSAMEG00000007098	APOBEC1	98	74.892	Ailuropoda_melanoleuca
ENSBTAG00000014683	APOBEC1	72	40.351	ENSACAG00000028578	-	93	40.351	Anolis_carolinensis
ENSBTAG00000014683	APOBEC1	100	75.424	ENSANAG00000027743	APOBEC1	95	75.424	Aotus_nancymaae
ENSBTAG00000014683	APOBEC1	94	73.756	ENSCJAG00000005398	APOBEC1	100	73.756	Callithrix_jacchus
ENSBTAG00000014683	APOBEC1	100	74.153	ENSCAFG00000013901	APOBEC1	100	74.153	Canis_familiaris
ENSBTAG00000014683	APOBEC1	96	73.009	ENSCAFG00020003511	APOBEC1	95	73.009	Canis_lupus_dingo
ENSBTAG00000014683	APOBEC1	98	90.476	ENSCHIG00000011898	APOBEC1	96	90.476	Capra_hircus
ENSBTAG00000014683	APOBEC1	59	71.942	ENSTSYG00000029141	APOBEC1	99	71.942	Carlito_syrichta
ENSBTAG00000014683	APOBEC1	91	64.186	ENSCAPG00000015882	-	100	64.186	Cavia_aperea
ENSBTAG00000014683	APOBEC1	99	62.553	ENSCPOG00000033068	APOBEC1	99	62.553	Cavia_porcellus
ENSBTAG00000014683	APOBEC1	100	75.847	ENSCCAG00000022258	APOBEC1	100	75.847	Cebus_capucinus
ENSBTAG00000014683	APOBEC1	100	74.153	ENSCATG00000021613	APOBEC1	95	74.153	Cercocebus_atys
ENSBTAG00000014683	APOBEC1	97	66.087	ENSCLAG00000014645	APOBEC1	100	66.087	Chinchilla_lanigera
ENSBTAG00000014683	APOBEC1	81	75.263	ENSCSAG00000009817	APOBEC1	99	75.263	Chlorocebus_sabaeus
ENSBTAG00000014683	APOBEC1	83	43.939	ENSCPBG00000014328	-	86	43.939	Chrysemys_picta_bellii
ENSBTAG00000014683	APOBEC1	83	45.408	ENSCPBG00000014329	-	54	45.408	Chrysemys_picta_bellii
ENSBTAG00000014683	APOBEC1	89	38.389	ENSCPBG00000014327	-	82	38.389	Chrysemys_picta_bellii
ENSBTAG00000014683	APOBEC1	77	43.850	ENSCPBG00000017398	-	82	43.850	Chrysemys_picta_bellii
ENSBTAG00000014683	APOBEC1	78	46.524	ENSCPBG00000014335	-	76	46.524	Chrysemys_picta_bellii
ENSBTAG00000014683	APOBEC1	98	37.872	ENSCPBG00000014331	-	94	37.872	Chrysemys_picta_bellii
ENSBTAG00000014683	APOBEC1	97	73.913	ENSCANG00000038359	APOBEC1	100	73.913	Colobus_angolensis_palliatus
ENSBTAG00000014683	APOBEC1	97	67.249	ENSCGRG00001011130	Apobec1	100	67.249	Cricetulus_griseus_chok1gshd
ENSBTAG00000014683	APOBEC1	97	67.249	ENSCGRG00000008644	Apobec1	100	67.249	Cricetulus_griseus_crigri
ENSBTAG00000014683	APOBEC1	100	71.186	ENSDNOG00000010926	APOBEC1	100	71.186	Dasypus_novemcinctus
ENSBTAG00000014683	APOBEC1	90	64.486	ENSDORG00000023717	Apobec1	100	64.486	Dipodomys_ordii
ENSBTAG00000014683	APOBEC1	97	70.000	ENSETEG00000004867	APOBEC1	97	70.000	Echinops_telfairi
ENSBTAG00000014683	APOBEC1	98	78.355	ENSEASG00005015951	APOBEC1	97	78.355	Equus_asinus_asinus
ENSBTAG00000014683	APOBEC1	81	79.474	ENSECAG00000017163	APOBEC1	99	79.474	Equus_caballus
ENSBTAG00000014683	APOBEC1	86	51.471	ENSEEUG00000007530	-	97	51.471	Erinaceus_europaeus
ENSBTAG00000014683	APOBEC1	93	60.909	ENSEEUG00000009112	-	98	60.909	Erinaceus_europaeus
ENSBTAG00000014683	APOBEC1	100	74.576	ENSFCAG00000009350	APOBEC1	100	74.576	Felis_catus
ENSBTAG00000014683	APOBEC1	60	44.366	ENSFALG00000007257	-	70	44.366	Ficedula_albicollis
ENSBTAG00000014683	APOBEC1	88	53.623	ENSFDAG00000018470	APOBEC1	99	53.623	Fukomys_damarensis
ENSBTAG00000014683	APOBEC1	88	47.368	ENSGAGG00000011837	-	86	49.167	Gopherus_agassizii
ENSBTAG00000014683	APOBEC1	72	46.199	ENSGAGG00000006624	-	62	46.199	Gopherus_agassizii
ENSBTAG00000014683	APOBEC1	88	41.148	ENSGAGG00000021744	-	82	41.148	Gopherus_agassizii
ENSBTAG00000014683	APOBEC1	72	41.379	ENSGAGG00000021745	-	64	41.379	Gopherus_agassizii
ENSBTAG00000014683	APOBEC1	78	42.162	ENSGAGG00000004947	-	88	42.162	Gopherus_agassizii
ENSBTAG00000014683	APOBEC1	99	60.426	ENSHGLG00000001495	APOBEC1	99	60.426	Heterocephalus_glaber_female
ENSBTAG00000014683	APOBEC1	99	59.149	ENSHGLG00100002187	APOBEC1	99	59.149	Heterocephalus_glaber_male
ENSBTAG00000014683	APOBEC1	91	58.140	ENSSTOG00000021971	APOBEC1	100	73.469	Ictidomys_tridecemlineatus
ENSBTAG00000014683	APOBEC1	97	72.052	ENSJJAG00000022108	Apobec1	100	72.052	Jaculus_jaculus
ENSBTAG00000014683	APOBEC1	94	73.094	ENSLAFG00000030837	APOBEC1	100	73.094	Loxodonta_africana
ENSBTAG00000014683	APOBEC1	100	74.576	ENSMFAG00000000277	APOBEC1	98	76.596	Macaca_fascicularis
ENSBTAG00000014683	APOBEC1	100	74.153	ENSMNEG00000029670	APOBEC1	100	74.153	Macaca_nemestrina
ENSBTAG00000014683	APOBEC1	100	74.153	ENSMLEG00000036301	APOBEC1	100	74.153	Mandrillus_leucophaeus
ENSBTAG00000014683	APOBEC1	92	67.130	ENSMAUG00000022167	Apobec1	97	67.130	Mesocricetus_auratus
ENSBTAG00000014683	APOBEC1	100	71.610	ENSMICG00000043645	APOBEC1	100	71.610	Microcebus_murinus
ENSBTAG00000014683	APOBEC1	100	63.559	ENSMODG00000018004	APOBEC1	100	63.559	Monodelphis_domestica
ENSBTAG00000014683	APOBEC1	97	67.105	ENSMUSG00000040613	Apobec1	99	67.105	Mus_musculus
ENSBTAG00000014683	APOBEC1	97	67.105	MGP_PahariEiJ_G0022580	-	99	67.105	Mus_pahari
ENSBTAG00000014683	APOBEC1	97	67.105	MGP_SPRETEiJ_G0029857	Apobec1	99	67.105	Mus_spretus
ENSBTAG00000014683	APOBEC1	100	74.153	ENSMPUG00000017532	APOBEC1	100	74.153	Mustela_putorius_furo
ENSBTAG00000014683	APOBEC1	97	69.869	ENSNGAG00000022607	Apobec1	100	69.869	Nannospalax_galili
ENSBTAG00000014683	APOBEC1	100	73.305	ENSNLEG00000005342	APOBEC1	100	73.305	Nomascus_leucogenys
ENSBTAG00000014683	APOBEC1	100	59.746	ENSMEUG00000013406	APOBEC1	100	59.746	Notamacropus_eugenii
ENSBTAG00000014683	APOBEC1	77	59.669	ENSOPRG00000009508	-	100	59.669	Ochotona_princeps
ENSBTAG00000014683	APOBEC1	100	71.186	ENSOCUG00000025736	APOBEC1	88	71.186	Oryctolagus_cuniculus
ENSBTAG00000014683	APOBEC1	98	69.697	ENSOGAG00000026415	APOBEC1	98	69.697	Otolemur_garnettii
ENSBTAG00000014683	APOBEC1	100	90.254	ENSOARG00000002072	APOBEC1	99	90.254	Ovis_aries
ENSBTAG00000014683	APOBEC1	98	67.965	ENSPPAG00000027657	APOBEC1	98	67.965	Pan_paniscus
ENSBTAG00000014683	APOBEC1	100	74.153	ENSPPRG00000012182	APOBEC1	100	74.153	Panthera_pardus
ENSBTAG00000014683	APOBEC1	100	74.153	ENSPTIG00000020280	APOBEC1	100	74.153	Panthera_tigris_altaica
ENSBTAG00000014683	APOBEC1	100	73.305	ENSPTRG00000004614	APOBEC1	100	73.305	Pan_troglodytes
ENSBTAG00000014683	APOBEC1	100	73.729	ENSPANG00000021027	APOBEC1	100	73.729	Papio_anubis
ENSBTAG00000014683	APOBEC1	53	48.624	ENSPSIG00000012791	-	72	48.624	Pelodiscus_sinensis
ENSBTAG00000014683	APOBEC1	99	38.655	ENSPSIG00000012568	-	99	38.655	Pelodiscus_sinensis
ENSBTAG00000014683	APOBEC1	97	66.812	ENSPEMG00000023841	Apobec1	100	66.812	Peromyscus_maniculatus_bairdii
ENSBTAG00000014683	APOBEC1	100	62.288	ENSPCIG00000023973	APOBEC1	100	62.288	Phascolarctos_cinereus
ENSBTAG00000014683	APOBEC1	100	72.034	ENSPPYG00000004228	APOBEC1	95	72.034	Pongo_abelii
ENSBTAG00000014683	APOBEC1	79	71.123	ENSPCAG00000008733	APOBEC1	100	71.123	Procavia_capensis
ENSBTAG00000014683	APOBEC1	94	72.072	ENSPCOG00000013957	APOBEC1	98	72.072	Propithecus_coquereli
ENSBTAG00000014683	APOBEC1	100	59.322	ENSPVAG00000010709	APOBEC1	100	59.322	Pteropus_vampyrus
ENSBTAG00000014683	APOBEC1	97	67.105	ENSRNOG00000015411	Apobec1	99	67.105	Rattus_norvegicus
ENSBTAG00000014683	APOBEC1	100	72.881	ENSRBIG00000031161	APOBEC1	100	72.881	Rhinopithecus_bieti
ENSBTAG00000014683	APOBEC1	100	72.881	ENSRROG00000033576	APOBEC1	100	72.881	Rhinopithecus_roxellana
ENSBTAG00000014683	APOBEC1	73	75.145	ENSSBOG00000030587	APOBEC1	98	75.145	Saimiri_boliviensis_boliviensis
ENSBTAG00000014683	APOBEC1	96	62.555	ENSSHAG00000008925	APOBEC1	99	62.555	Sarcophilus_harrisii
ENSBTAG00000014683	APOBEC1	56	66.667	ENSSARG00000011972	-	100	66.667	Sorex_araneus
ENSBTAG00000014683	APOBEC1	73	63.953	ENSSARG00000000032	-	100	63.953	Sorex_araneus
ENSBTAG00000014683	APOBEC1	88	39.336	ENSSPUG00000009044	-	81	39.336	Sphenodon_punctatus
ENSBTAG00000014683	APOBEC1	100	78.390	ENSSSCG00000000668	APOBEC1	100	78.390	Sus_scrofa
ENSBTAG00000014683	APOBEC1	61	47.222	ENSTGUG00000013118	-	99	47.222	Taeniopygia_guttata
ENSBTAG00000014683	APOBEC1	94	67.873	ENSTBEG00000010043	APOBEC1	94	67.873	Tupaia_belangeri
ENSBTAG00000014683	APOBEC1	79	76.471	ENSTTRG00000014015	APOBEC1	100	76.471	Tursiops_truncatus
ENSBTAG00000014683	APOBEC1	98	74.459	ENSUAMG00000011636	APOBEC1	95	74.459	Ursus_americanus
ENSBTAG00000014683	APOBEC1	98	74.459	ENSUMAG00000016552	APOBEC1	95	74.459	Ursus_maritimus
ENSBTAG00000014683	APOBEC1	100	74.153	ENSVPAG00000001343	APOBEC1	100	74.153	Vicugna_pacos
ENSBTAG00000014683	APOBEC1	100	74.153	ENSVVUG00000010522	APOBEC1	100	74.153	Vulpes_vulpes