EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000015758 (Gene tree)
Gene ID: 510934
Gene Symbol: USB1
Alias: -
Full Name: Bos taurus U6 snRNA biogenesis phosphodiesterase 1 (USB1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 15302 bases
Position: chr18:25907856-25923157
Accession: NM_001075477
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000020923	HVSL	PF09749.9	9.1e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000020923	-	1857	XM_010814465	ENSBTAP00000020923	265 (aa)	XP_010812767	Q0II50

Gene Model

Click here to download ENSBTAG00000015758's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000015758's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000015758	USB1	100	83.774	ENSG00000103005	USB1	100	85.514	Homo_sapiens
ENSBTAG00000015758	USB1	98	47.312	ENSAPOG00000011942	usb1	99	47.312	Acanthochromis_polyacanthus
ENSBTAG00000015758	USB1	100	84.015	ENSAMEG00000017205	USB1	100	84.387	Ailuropoda_melanoleuca
ENSBTAG00000015758	USB1	85	53.571	ENSACIG00000012234	usb1	99	49.630	Amphilophus_citrinellus
ENSBTAG00000015758	USB1	90	51.681	ENSAOCG00000014831	usb1	99	48.399	Amphiprion_ocellaris
ENSBTAG00000015758	USB1	90	51.261	ENSAPEG00000000296	usb1	99	48.043	Amphiprion_percula
ENSBTAG00000015758	USB1	95	50.988	ENSATEG00000009348	usb1	99	48.214	Anabas_testudineus
ENSBTAG00000015758	USB1	85	69.027	ENSAPLG00000002756	USB1	100	69.027	Anas_platyrhynchos
ENSBTAG00000015758	USB1	86	63.319	ENSACAG00000015481	USB1	100	63.319	Anolis_carolinensis
ENSBTAG00000015758	USB1	100	83.396	ENSANAG00000035640	USB1	100	83.396	Aotus_nancymaae
ENSBTAG00000015758	USB1	92	51.230	ENSACLG00000020586	usb1	99	47.902	Astatotilapia_calliptera
ENSBTAG00000015758	USB1	84	51.570	ENSAMXG00000040146	usb1	95	44.948	Astyanax_mexicanus
ENSBTAG00000015758	USB1	100	85.660	ENSCJAG00000011733	USB1	100	85.660	Callithrix_jacchus
ENSBTAG00000015758	USB1	99	81.985	ENSCAFG00000008556	USB1	73	82.721	Canis_familiaris
ENSBTAG00000015758	USB1	99	82.642	ENSCAFG00020009263	USB1	99	82.642	Canis_lupus_dingo
ENSBTAG00000015758	USB1	100	95.472	ENSCHIG00000024290	USB1	100	95.472	Capra_hircus
ENSBTAG00000015758	USB1	100	83.774	ENSTSYG00000006997	USB1	100	83.774	Carlito_syrichta
ENSBTAG00000015758	USB1	88	71.983	ENSCAPG00000009057	USB1	100	71.983	Cavia_aperea
ENSBTAG00000015758	USB1	100	82.836	ENSCPOG00000014325	USB1	100	82.836	Cavia_porcellus
ENSBTAG00000015758	USB1	100	84.151	ENSCCAG00000022132	USB1	100	84.151	Cebus_capucinus
ENSBTAG00000015758	USB1	100	84.528	ENSCATG00000032174	USB1	100	84.528	Cercocebus_atys
ENSBTAG00000015758	USB1	66	87.500	ENSCLAG00000007363	USB1	100	87.500	Chinchilla_lanigera
ENSBTAG00000015758	USB1	100	84.528	ENSCSAG00000004783	USB1	100	84.528	Chlorocebus_sabaeus
ENSBTAG00000015758	USB1	92	65.164	ENSCPBG00000026943	USB1	100	63.571	Chrysemys_picta_bellii
ENSBTAG00000015758	USB1	84	34.468	ENSCING00000011490	-	98	31.884	Ciona_intestinalis
ENSBTAG00000015758	USB1	83	32.599	ENSCSAVG00000000894	-	92	30.712	Ciona_savignyi
ENSBTAG00000015758	USB1	100	83.019	ENSCANG00000037135	USB1	100	83.019	Colobus_angolensis_palliatus
ENSBTAG00000015758	USB1	100	82.090	ENSCGRG00001011243	USB1	100	82.090	Cricetulus_griseus_chok1gshd
ENSBTAG00000015758	USB1	100	82.090	ENSCGRG00000013252	USB1	100	82.090	Cricetulus_griseus_crigri
ENSBTAG00000015758	USB1	99	48.669	ENSCSEG00000013881	usb1	92	48.669	Cynoglossus_semilaevis
ENSBTAG00000015758	USB1	85	50.439	ENSCVAG00000009252	usb1	97	50.877	Cyprinodon_variegatus
ENSBTAG00000015758	USB1	94	47.791	ENSDARG00000003841	usb1	99	46.182	Danio_rerio
ENSBTAG00000015758	USB1	100	81.132	ENSDORG00000001888	Usb1	100	81.132	Dipodomys_ordii
ENSBTAG00000015758	USB1	86	37.500	FBgn0037713	CG16790	97	36.842	Drosophila_melanogaster
ENSBTAG00000015758	USB1	100	71.161	ENSETEG00000019682	USB1	100	71.161	Echinops_telfairi
ENSBTAG00000015758	USB1	84	49.099	ENSEBUG00000005889	usb1	78	49.099	Eptatretus_burgeri
ENSBTAG00000015758	USB1	100	87.547	ENSEASG00005005484	USB1	100	87.547	Equus_asinus_asinus
ENSBTAG00000015758	USB1	100	87.547	ENSECAG00000019493	USB1	91	87.547	Equus_caballus
ENSBTAG00000015758	USB1	100	61.509	ENSEEUG00000000154	USB1	100	61.509	Erinaceus_europaeus
ENSBTAG00000015758	USB1	94	46.400	ENSELUG00000010974	usb1	99	44.245	Esox_lucius
ENSBTAG00000015758	USB1	100	85.019	ENSFCAG00000002693	USB1	100	85.019	Felis_catus
ENSBTAG00000015758	USB1	85	66.071	ENSFALG00000006876	USB1	99	62.454	Ficedula_albicollis
ENSBTAG00000015758	USB1	100	83.146	ENSFDAG00000010052	USB1	100	83.146	Fukomys_damarensis
ENSBTAG00000015758	USB1	85	47.325	ENSFHEG00000012334	usb1	96	47.737	Fundulus_heteroclitus
ENSBTAG00000015758	USB1	84	50.673	ENSGMOG00000004228	usb1	99	50.673	Gadus_morhua
ENSBTAG00000015758	USB1	84	67.857	ENSGALG00000035604	USB1	100	63.910	Gallus_gallus
ENSBTAG00000015758	USB1	98	48.014	ENSGAFG00000021890	usb1	99	48.014	Gambusia_affinis
ENSBTAG00000015758	USB1	94	49.398	ENSGACG00000003257	usb1	99	48.551	Gasterosteus_aculeatus
ENSBTAG00000015758	USB1	100	63.869	ENSGAGG00000022572	USB1	100	63.869	Gopherus_agassizii
ENSBTAG00000015758	USB1	100	83.774	ENSGGOG00000017147	USB1	100	83.774	Gorilla_gorilla
ENSBTAG00000015758	USB1	92	51.639	ENSHBUG00000009823	usb1	99	48.929	Haplochromis_burtoni
ENSBTAG00000015758	USB1	100	83.895	ENSHGLG00000016078	USB1	98	83.895	Heterocephalus_glaber_female
ENSBTAG00000015758	USB1	100	83.895	ENSHGLG00100005562	USB1	98	83.895	Heterocephalus_glaber_male
ENSBTAG00000015758	USB1	82	52.315	ENSHCOG00000015633	usb1	99	50.193	Hippocampus_comes
ENSBTAG00000015758	USB1	97	48.047	ENSIPUG00000008601	usb1	99	46.181	Ictalurus_punctatus
ENSBTAG00000015758	USB1	100	82.418	ENSSTOG00000007548	USB1	100	83.150	Ictidomys_tridecemlineatus
ENSBTAG00000015758	USB1	100	84.270	ENSJJAG00000021859	Usb1	100	84.270	Jaculus_jaculus
ENSBTAG00000015758	USB1	96	48.249	ENSKMAG00000007200	usb1	99	48.399	Kryptolebias_marmoratus
ENSBTAG00000015758	USB1	75	53.266	ENSLBEG00000008452	usb1	82	47.755	Labrus_bergylta
ENSBTAG00000015758	USB1	88	53.086	ENSLACG00000000105	USB1	92	52.075	Latimeria_chalumnae
ENSBTAG00000015758	USB1	95	53.307	ENSLOCG00000000465	usb1	99	50.526	Lepisosteus_oculatus
ENSBTAG00000015758	USB1	100	65.683	ENSLAFG00000002267	USB1	100	66.052	Loxodonta_africana
ENSBTAG00000015758	USB1	100	84.906	ENSMFAG00000003926	USB1	100	84.906	Macaca_fascicularis
ENSBTAG00000015758	USB1	100	84.906	ENSMMUG00000022669	USB1	100	84.906	Macaca_mulatta
ENSBTAG00000015758	USB1	100	84.528	ENSMNEG00000042487	USB1	100	84.528	Macaca_nemestrina
ENSBTAG00000015758	USB1	100	84.906	ENSMLEG00000028756	USB1	100	84.906	Mandrillus_leucophaeus
ENSBTAG00000015758	USB1	98	49.281	ENSMAMG00000015092	usb1	99	49.281	Mastacembelus_armatus
ENSBTAG00000015758	USB1	92	51.230	ENSMZEG00005010008	usb1	99	48.070	Maylandia_zebra
ENSBTAG00000015758	USB1	100	81.648	ENSMAUG00000007832	Usb1	100	81.648	Mesocricetus_auratus
ENSBTAG00000015758	USB1	100	84.906	ENSMICG00000004900	USB1	100	84.906	Microcebus_murinus
ENSBTAG00000015758	USB1	100	79.775	ENSMOCG00000022647	Usb1	100	79.775	Microtus_ochrogaster
ENSBTAG00000015758	USB1	98	50.385	ENSMMOG00000000490	usb1	99	50.769	Mola_mola
ENSBTAG00000015758	USB1	100	67.910	ENSMODG00000014067	USB1	100	68.284	Monodelphis_domestica
ENSBTAG00000015758	USB1	95	50.199	ENSMALG00000005930	usb1	99	46.975	Monopterus_albus
ENSBTAG00000015758	USB1	100	80.524	MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	Mus_caroli
ENSBTAG00000015758	USB1	100	79.775	ENSMUSG00000031792	Usb1	100	82.301	Mus_musculus
ENSBTAG00000015758	USB1	100	80.150	MGP_PahariEiJ_G0023019	Usb1	100	82.906	Mus_pahari
ENSBTAG00000015758	USB1	100	79.775	MGP_SPRETEiJ_G0032540	Usb1	100	79.775	Mus_spretus
ENSBTAG00000015758	USB1	100	82.528	ENSMPUG00000004684	USB1	96	82.528	Mustela_putorius_furo
ENSBTAG00000015758	USB1	87	88.745	ENSMLUG00000007400	USB1	100	88.745	Myotis_lucifugus
ENSBTAG00000015758	USB1	100	83.271	ENSNGAG00000009703	Usb1	100	84.387	Nannospalax_galili
ENSBTAG00000015758	USB1	92	48.361	ENSNBRG00000008747	usb1	99	52.804	Neolamprologus_brichardi
ENSBTAG00000015758	USB1	94	83.600	ENSNLEG00000003340	USB1	100	83.600	Nomascus_leucogenys
ENSBTAG00000015758	USB1	56	60.000	ENSMEUG00000003328	-	99	61.935	Notamacropus_eugenii
ENSBTAG00000015758	USB1	63	87.879	ENSOPRG00000011803	USB1	72	87.879	Ochotona_princeps
ENSBTAG00000015758	USB1	100	79.775	ENSODEG00000016214	USB1	100	79.775	Octodon_degus
ENSBTAG00000015758	USB1	98	48.571	ENSONIG00000011063	usb1	99	48.571	Oreochromis_niloticus
ENSBTAG00000015758	USB1	88	70.213	ENSOANG00000012118	USB1	97	70.213	Ornithorhynchus_anatinus
ENSBTAG00000015758	USB1	94	46.586	ENSORLG00000012479	usb1	99	45.756	Oryzias_latipes
ENSBTAG00000015758	USB1	94	46.586	ENSORLG00020018671	usb1	99	45.556	Oryzias_latipes_hni
ENSBTAG00000015758	USB1	93	45.136	ENSORLG00015009679	usb1	99	46.296	Oryzias_latipes_hsok
ENSBTAG00000015758	USB1	85	50.000	ENSOMEG00000012930	usb1	99	45.818	Oryzias_melastigma
ENSBTAG00000015758	USB1	100	80.000	ENSOGAG00000003273	USB1	100	80.000	Otolemur_garnettii
ENSBTAG00000015758	USB1	95	94.862	ENSOARG00000001107	USB1	97	94.862	Ovis_aries
ENSBTAG00000015758	USB1	100	84.151	ENSPPAG00000042137	USB1	100	84.151	Pan_paniscus
ENSBTAG00000015758	USB1	100	84.270	ENSPPRG00000024797	USB1	100	84.270	Panthera_pardus
ENSBTAG00000015758	USB1	100	84.270	ENSPTIG00000007506	USB1	100	84.270	Panthera_tigris_altaica
ENSBTAG00000015758	USB1	100	78.113	ENSPTRG00000008172	USB1	100	86.449	Pan_troglodytes
ENSBTAG00000015758	USB1	100	84.906	ENSPANG00000025138	USB1	100	84.906	Papio_anubis
ENSBTAG00000015758	USB1	96	50.781	ENSPKIG00000015109	usb1	99	48.136	Paramormyrops_kingsleyae
ENSBTAG00000015758	USB1	85	53.509	ENSPSIG00000004305	USB1	100	53.509	Pelodiscus_sinensis
ENSBTAG00000015758	USB1	84	51.121	ENSPMGG00000017725	usb1	98	48.263	Periophthalmus_magnuspinnatus
ENSBTAG00000015758	USB1	100	80.515	ENSPEMG00000016183	Usb1	100	81.319	Peromyscus_maniculatus_bairdii
ENSBTAG00000015758	USB1	88	51.489	ENSPMAG00000000462	usb1	99	51.489	Petromyzon_marinus
ENSBTAG00000015758	USB1	98	48.188	ENSPFOG00000011130	usb1	99	48.188	Poecilia_formosa
ENSBTAG00000015758	USB1	98	48.188	ENSPLAG00000009820	usb1	99	48.188	Poecilia_latipinna
ENSBTAG00000015758	USB1	98	48.014	ENSPMEG00000006402	usb1	99	48.014	Poecilia_mexicana
ENSBTAG00000015758	USB1	85	48.560	ENSPREG00000001047	usb1	98	49.383	Poecilia_reticulata
ENSBTAG00000015758	USB1	95	79.762	ENSPPYG00000007401	USB1	100	79.762	Pongo_abelii
ENSBTAG00000015758	USB1	100	84.151	ENSPCOG00000022612	USB1	100	84.151	Propithecus_coquereli
ENSBTAG00000015758	USB1	100	84.528	ENSPVAG00000004613	USB1	100	84.528	Pteropus_vampyrus
ENSBTAG00000015758	USB1	92	51.639	ENSPNYG00000022262	usb1	99	48.929	Pundamilia_nyererei
ENSBTAG00000015758	USB1	98	48.092	ENSPNAG00000011736	usb1	88	48.092	Pygocentrus_nattereri
ENSBTAG00000015758	USB1	100	80.524	ENSRNOG00000013216	Usb1	100	80.524	Rattus_norvegicus
ENSBTAG00000015758	USB1	100	78.491	ENSRBIG00000044466	USB1	100	86.916	Rhinopithecus_bieti
ENSBTAG00000015758	USB1	100	84.151	ENSRROG00000029211	USB1	100	84.151	Rhinopithecus_roxellana
ENSBTAG00000015758	USB1	100	84.906	ENSSBOG00000029362	USB1	100	84.906	Saimiri_boliviensis_boliviensis
ENSBTAG00000015758	USB1	83	71.689	ENSSHAG00000006993	USB1	100	67.589	Sarcophilus_harrisii
ENSBTAG00000015758	USB1	87	56.710	ENSSFOG00015023663	usb1	91	49.653	Scleropages_formosus
ENSBTAG00000015758	USB1	98	48.029	ENSSMAG00000015834	usb1	99	47.619	Scophthalmus_maximus
ENSBTAG00000015758	USB1	85	55.357	ENSSDUG00000002949	usb1	99	51.103	Seriola_dumerili
ENSBTAG00000015758	USB1	85	55.357	ENSSLDG00000014174	usb1	99	49.462	Seriola_lalandi_dorsalis
ENSBTAG00000015758	USB1	81	67.757	ENSSPUG00000006741	USB1	100	67.757	Sphenodon_punctatus
ENSBTAG00000015758	USB1	98	46.181	ENSSPAG00000007484	usb1	99	46.181	Stegastes_partitus
ENSBTAG00000015758	USB1	100	88.476	ENSSSCG00000002807	USB1	100	88.476	Sus_scrofa
ENSBTAG00000015758	USB1	80	68.868	ENSTGUG00000004792	USB1	99	63.774	Taeniopygia_guttata
ENSBTAG00000015758	USB1	98	47.761	ENSTRUG00000021069	usb1	99	47.761	Takifugu_rubripes
ENSBTAG00000015758	USB1	98	45.385	ENSTNIG00000000626	usb1	98	45.385	Tetraodon_nigroviridis
ENSBTAG00000015758	USB1	88	59.914	ENSTBEG00000001507	USB1	100	59.914	Tupaia_belangeri
ENSBTAG00000015758	USB1	58	90.909	ENSTTRG00000008429	-	58	90.909	Tursiops_truncatus
ENSBTAG00000015758	USB1	100	83.271	ENSUAMG00000016823	USB1	100	84.015	Ursus_americanus
ENSBTAG00000015758	USB1	81	85.047	ENSUMAG00000021369	USB1	100	85.047	Ursus_maritimus
ENSBTAG00000015758	USB1	77	60.591	ENSVPAG00000009834	-	100	60.591	Vicugna_pacos
ENSBTAG00000015758	USB1	99	83.209	ENSVVUG00000023700	USB1	95	82.591	Vulpes_vulpes
ENSBTAG00000015758	USB1	98	52.490	ENSXETG00000013795	usb1	99	53.462	Xenopus_tropicalis
ENSBTAG00000015758	USB1	94	49.600	ENSXMAG00000024687	usb1	80	48.780	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	-	ISS	Function
GO:0005634	nucleus	-	ISS	Component
GO:0008380	RNA splicing	-	ISS	Process
GO:0034477	U6 snRNA 3'-end processing	-	ISS	Process
GO:0045171	intercellular bridge	-	IEA	Component
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process
GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends	-	IEA	Function