EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000015868 (Gene tree)
Gene ID: 781252
Gene Symbol: LIG4
Alias: -
Full Name: Bos taurus DNA ligase 4 (LIG4)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 8074 bases
Position: chr12:83594754-83602827
Accession: NM_001191126
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000069467	RNA_ligase	PF09414.10	1.3e-10	1	1
ENSBTAP00000021092	RNA_ligase	PF09414.10	1.7e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000021092	-	4296	XM_005213999	ENSBTAP00000021092	911 (aa)	XP_005214056	F1MB07
ENSBTAT00000079721	-	3327	-	ENSBTAP00000069467	856 (aa)	XP_024855765	UPI000D538830

Gene Model

Click here to download ENSBTAG00000015868's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000015868's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000015868	LIG4	100	89.243	ENSG00000174405	LIG4	100	89.243	Homo_sapiens
ENSBTAG00000015868	LIG4	99	65.604	ENSAPOG00000000866	lig4	99	65.824	Acanthochromis_polyacanthus
ENSBTAG00000015868	LIG4	100	87.925	ENSAMEG00000019685	LIG4	99	87.925	Ailuropoda_melanoleuca
ENSBTAG00000015868	LIG4	99	65.604	ENSACIG00000018309	lig4	99	65.824	Amphilophus_citrinellus
ENSBTAG00000015868	LIG4	99	65.495	ENSAOCG00000011768	lig4	99	65.714	Amphiprion_ocellaris
ENSBTAG00000015868	LIG4	99	65.604	ENSAPEG00000017815	lig4	99	65.824	Amphiprion_percula
ENSBTAG00000015868	LIG4	99	64.725	ENSATEG00000005583	lig4	99	64.835	Anabas_testudineus
ENSBTAG00000015868	LIG4	97	74.717	ENSAPLG00000001673	LIG4	99	74.717	Anas_platyrhynchos
ENSBTAG00000015868	LIG4	99	74.529	ENSACAG00000014566	LIG4	99	74.529	Anolis_carolinensis
ENSBTAG00000015868	LIG4	100	88.035	ENSANAG00000012446	LIG4	100	88.035	Aotus_nancymaae
ENSBTAG00000015868	LIG4	99	65.385	ENSACLG00000027051	lig4	99	65.385	Astatotilapia_calliptera
ENSBTAG00000015868	LIG4	99	63.934	ENSAMXG00000008192	lig4	94	63.934	Astyanax_mexicanus
ENSBTAG00000015868	LIG4	100	87.157	ENSCJAG00000014689	LIG4	100	87.157	Callithrix_jacchus
ENSBTAG00000015868	LIG4	100	88.913	ENSCAFG00000006031	LIG4	100	88.913	Canis_familiaris
ENSBTAG00000015868	LIG4	100	88.913	ENSCAFG00020021230	LIG4	100	88.913	Canis_lupus_dingo
ENSBTAG00000015868	LIG4	100	97.036	ENSCHIG00000001019	LIG4	100	97.036	Capra_hircus
ENSBTAG00000015868	LIG4	99	87.154	ENSCAPG00000006284	LIG4	99	87.154	Cavia_aperea
ENSBTAG00000015868	LIG4	100	87.157	ENSCPOG00000014266	LIG4	100	87.157	Cavia_porcellus
ENSBTAG00000015868	LIG4	100	87.925	ENSCCAG00000019971	LIG4	100	87.925	Cebus_capucinus
ENSBTAG00000015868	LIG4	100	88.255	ENSCATG00000021075	LIG4	100	88.255	Cercocebus_atys
ENSBTAG00000015868	LIG4	100	87.486	ENSCLAG00000003376	LIG4	100	87.486	Chinchilla_lanigera
ENSBTAG00000015868	LIG4	100	88.474	ENSCSAG00000000211	LIG4	100	88.474	Chlorocebus_sabaeus
ENSBTAG00000015868	LIG4	99	77.483	ENSCPBG00000023291	LIG4	100	76.906	Chrysemys_picta_bellii
ENSBTAG00000015868	LIG4	73	47.218	ENSCING00000009536	-	95	47.218	Ciona_intestinalis
ENSBTAG00000015868	LIG4	88	46.518	ENSCSAVG00000010336	-	98	46.518	Ciona_savignyi
ENSBTAG00000015868	LIG4	100	88.364	ENSCANG00000005805	LIG4	100	88.364	Colobus_angolensis_palliatus
ENSBTAG00000015868	LIG4	100	85.197	ENSCGRG00001012072	Lig4	100	85.197	Cricetulus_griseus_chok1gshd
ENSBTAG00000015868	LIG4	100	85.197	ENSCGRG00000013417	Lig4	100	85.197	Cricetulus_griseus_crigri
ENSBTAG00000015868	LIG4	97	66.136	ENSCSEG00000013905	lig4	95	66.136	Cynoglossus_semilaevis
ENSBTAG00000015868	LIG4	99	65.449	ENSCVAG00000007896	lig4	99	65.449	Cyprinodon_variegatus
ENSBTAG00000015868	LIG4	99	63.525	ENSDARG00000060620	lig4	98	63.525	Danio_rerio
ENSBTAG00000015868	LIG4	100	87.500	ENSDNOG00000000513	LIG4	100	87.500	Dasypus_novemcinctus
ENSBTAG00000015868	LIG4	100	85.620	ENSDORG00000027303	Lig4	100	85.620	Dipodomys_ordii
ENSBTAG00000015868	LIG4	94	31.287	FBgn0030506	Lig4	91	31.382	Drosophila_melanogaster
ENSBTAG00000015868	LIG4	99	83.149	ENSETEG00000015563	LIG4	100	83.481	Echinops_telfairi
ENSBTAG00000015868	LIG4	99	44.071	ENSEBUG00000014243	lig4	99	44.071	Eptatretus_burgeri
ENSBTAG00000015868	LIG4	100	88.584	ENSEASG00005022073	LIG4	100	88.584	Equus_asinus_asinus
ENSBTAG00000015868	LIG4	100	88.474	ENSECAG00000003257	LIG4	100	88.474	Equus_caballus
ENSBTAG00000015868	LIG4	99	66.373	ENSELUG00000006787	lig4	99	66.483	Esox_lucius
ENSBTAG00000015868	LIG4	100	88.474	ENSFCAG00000031985	LIG4	100	88.474	Felis_catus
ENSBTAG00000015868	LIG4	94	75.713	ENSFALG00000004214	LIG4	99	75.245	Ficedula_albicollis
ENSBTAG00000015868	LIG4	100	87.596	ENSFDAG00000008973	LIG4	100	87.596	Fukomys_damarensis
ENSBTAG00000015868	LIG4	99	64.895	ENSFHEG00000007398	lig4	89	65.083	Fundulus_heteroclitus
ENSBTAG00000015868	LIG4	91	63.928	ENSGMOG00000012843	lig4	99	63.928	Gadus_morhua
ENSBTAG00000015868	LIG4	100	73.799	ENSGALG00000016854	LIG4	100	73.799	Gallus_gallus
ENSBTAG00000015868	LIG4	99	65.145	ENSGAFG00000019779	lig4	95	64.945	Gambusia_affinis
ENSBTAG00000015868	LIG4	99	63.787	ENSGACG00000014135	lig4	99	63.787	Gasterosteus_aculeatus
ENSBTAG00000015868	LIG4	100	89.133	ENSGGOG00000027771	LIG4	100	89.133	Gorilla_gorilla
ENSBTAG00000015868	LIG4	99	65.165	ENSHBUG00000006245	lig4	99	65.165	Haplochromis_burtoni
ENSBTAG00000015868	LIG4	100	87.486	ENSHGLG00000000718	LIG4	100	87.486	Heterocephalus_glaber_female
ENSBTAG00000015868	LIG4	100	87.486	ENSHGLG00100003265	LIG4	100	87.486	Heterocephalus_glaber_male
ENSBTAG00000015868	LIG4	99	64.615	ENSHCOG00000012010	lig4	99	64.615	Hippocampus_comes
ENSBTAG00000015868	LIG4	99	64.874	ENSIPUG00000013748	lig4	99	64.874	Ictalurus_punctatus
ENSBTAG00000015868	LIG4	100	87.596	ENSSTOG00000024303	LIG4	100	87.596	Ictidomys_tridecemlineatus
ENSBTAG00000015868	LIG4	100	86.389	ENSJJAG00000006750	Lig4	100	86.389	Jaculus_jaculus
ENSBTAG00000015868	LIG4	99	64.895	ENSKMAG00000001149	lig4	99	64.895	Kryptolebias_marmoratus
ENSBTAG00000015868	LIG4	91	65.505	ENSLBEG00000014578	lig4	100	65.745	Labrus_bergylta
ENSBTAG00000015868	LIG4	99	72.456	ENSLACG00000003282	LIG4	99	72.456	Latimeria_chalumnae
ENSBTAG00000015868	LIG4	99	69.890	ENSLOCG00000008901	lig4	98	69.890	Lepisosteus_oculatus
ENSBTAG00000015868	LIG4	100	85.433	ENSLAFG00000031152	LIG4	100	85.433	Loxodonta_africana
ENSBTAG00000015868	LIG4	100	88.474	ENSMFAG00000037235	LIG4	100	88.474	Macaca_fascicularis
ENSBTAG00000015868	LIG4	100	88.474	ENSMMUG00000008874	LIG4	100	88.474	Macaca_mulatta
ENSBTAG00000015868	LIG4	100	88.474	ENSMNEG00000023575	LIG4	100	88.474	Macaca_nemestrina
ENSBTAG00000015868	LIG4	100	88.145	ENSMLEG00000026720	LIG4	100	88.145	Mandrillus_leucophaeus
ENSBTAG00000015868	LIG4	99	65.495	ENSMAMG00000008472	lig4	99	65.714	Mastacembelus_armatus
ENSBTAG00000015868	LIG4	99	65.385	ENSMZEG00005001855	lig4	99	65.385	Maylandia_zebra
ENSBTAG00000015868	LIG4	100	74.563	ENSMGAG00000015532	LIG4	100	74.563	Meleagris_gallopavo
ENSBTAG00000015868	LIG4	100	82.876	ENSMOCG00000019000	Lig4	100	82.876	Microtus_ochrogaster
ENSBTAG00000015868	LIG4	99	64.452	ENSMMOG00000004390	lig4	99	64.452	Mola_mola
ENSBTAG00000015868	LIG4	100	82.217	ENSMODG00000025064	LIG4	100	82.675	Monodelphis_domestica
ENSBTAG00000015868	LIG4	99	65.449	ENSMALG00000008555	lig4	99	65.449	Monopterus_albus
ENSBTAG00000015868	LIG4	100	85.620	MGP_CAROLIEiJ_G0030809	Lig4	100	85.620	Mus_caroli
ENSBTAG00000015868	LIG4	100	85.181	ENSMUSG00000049717	Lig4	100	85.181	Mus_musculus
ENSBTAG00000015868	LIG4	100	85.291	MGP_PahariEiJ_G0021270	Lig4	100	85.291	Mus_pahari
ENSBTAG00000015868	LIG4	100	84.962	MGP_SPRETEiJ_G0031917	Lig4	100	84.962	Mus_spretus
ENSBTAG00000015868	LIG4	100	88.364	ENSMPUG00000018675	LIG4	100	88.364	Mustela_putorius_furo
ENSBTAG00000015868	LIG4	100	88.913	ENSMLUG00000001267	LIG4	100	88.913	Myotis_lucifugus
ENSBTAG00000015868	LIG4	100	86.169	ENSNGAG00000013258	Lig4	100	86.169	Nannospalax_galili
ENSBTAG00000015868	LIG4	99	65.055	ENSNBRG00000021252	lig4	99	65.055	Neolamprologus_brichardi
ENSBTAG00000015868	LIG4	100	88.694	ENSNLEG00000007888	LIG4	100	88.694	Nomascus_leucogenys
ENSBTAG00000015868	LIG4	100	85.730	ENSOPRG00000005765	LIG4	100	85.730	Ochotona_princeps
ENSBTAG00000015868	LIG4	100	85.291	ENSODEG00000019683	LIG4	100	85.291	Octodon_degus
ENSBTAG00000015868	LIG4	99	64.945	ENSONIG00000011969	lig4	98	65.165	Oreochromis_niloticus
ENSBTAG00000015868	LIG4	100	88.364	ENSOCUG00000015734	LIG4	100	88.364	Oryctolagus_cuniculus
ENSBTAG00000015868	LIG4	99	64.835	ENSORLG00000004041	lig4	99	64.835	Oryzias_latipes
ENSBTAG00000015868	LIG4	99	65.275	ENSORLG00020019607	lig4	99	65.275	Oryzias_latipes_hni
ENSBTAG00000015868	LIG4	99	64.945	ENSORLG00015017754	lig4	99	64.945	Oryzias_latipes_hsok
ENSBTAG00000015868	LIG4	79	69.527	ENSOMEG00000003459	lig4	98	69.527	Oryzias_melastigma
ENSBTAG00000015868	LIG4	100	86.623	ENSOGAG00000032120	LIG4	99	86.623	Otolemur_garnettii
ENSBTAG00000015868	LIG4	87	97.047	ENSOARG00000005590	LIG4	98	97.047	Ovis_aries
ENSBTAG00000015868	LIG4	100	88.804	ENSPPAG00000032998	LIG4	100	88.804	Pan_paniscus
ENSBTAG00000015868	LIG4	100	89.243	ENSPPRG00000017804	LIG4	100	89.243	Panthera_pardus
ENSBTAG00000015868	LIG4	100	89.243	ENSPTIG00000010051	LIG4	100	89.243	Panthera_tigris_altaica
ENSBTAG00000015868	LIG4	100	88.913	ENSPTRG00000006025	LIG4	100	88.913	Pan_troglodytes
ENSBTAG00000015868	LIG4	100	88.364	ENSPANG00000007562	LIG4	100	88.364	Papio_anubis
ENSBTAG00000015868	LIG4	99	66.411	ENSPKIG00000011645	lig4	98	66.411	Paramormyrops_kingsleyae
ENSBTAG00000015868	LIG4	99	76.813	ENSPSIG00000001504	LIG4	99	76.813	Pelodiscus_sinensis
ENSBTAG00000015868	LIG4	99	63.000	ENSPMGG00000013486	lig4	99	62.569	Periophthalmus_magnuspinnatus
ENSBTAG00000015868	LIG4	100	84.978	ENSPEMG00000000076	Lig4	100	84.978	Peromyscus_maniculatus_bairdii
ENSBTAG00000015868	LIG4	100	82.785	ENSPCIG00000021882	LIG4	100	82.785	Phascolarctos_cinereus
ENSBTAG00000015868	LIG4	99	64.961	ENSPFOG00000000797	lig4	99	64.835	Poecilia_formosa
ENSBTAG00000015868	LIG4	99	64.850	ENSPLAG00000001196	lig4	99	64.725	Poecilia_latipinna
ENSBTAG00000015868	LIG4	99	65.184	ENSPMEG00000021353	lig4	99	65.055	Poecilia_mexicana
ENSBTAG00000015868	LIG4	99	65.295	ENSPREG00000007323	lig4	99	64.835	Poecilia_reticulata
ENSBTAG00000015868	LIG4	100	88.804	ENSPPYG00000005540	LIG4	100	88.804	Pongo_abelii
ENSBTAG00000015868	LIG4	100	88.804	ENSPVAG00000016403	LIG4	100	88.804	Pteropus_vampyrus
ENSBTAG00000015868	LIG4	99	65.275	ENSPNYG00000009660	lig4	99	65.275	Pundamilia_nyererei
ENSBTAG00000015868	LIG4	100	63.965	ENSPNAG00000028056	lig4	100	63.965	Pygocentrus_nattereri
ENSBTAG00000015868	LIG4	100	63.965	ENSPNAG00000028069	LIG4	100	63.965	Pygocentrus_nattereri
ENSBTAG00000015868	LIG4	100	83.974	ENSRNOG00000014605	Lig4	100	83.974	Rattus_norvegicus
ENSBTAG00000015868	LIG4	100	87.047	ENSRBIG00000039962	LIG4	100	87.047	Rhinopithecus_bieti
ENSBTAG00000015868	LIG4	100	88.035	ENSRROG00000006040	LIG4	100	88.035	Rhinopithecus_roxellana
ENSBTAG00000015868	LIG4	100	87.267	ENSSBOG00000019029	LIG4	100	87.267	Saimiri_boliviensis_boliviensis
ENSBTAG00000015868	LIG4	100	79.034	ENSSHAG00000009525	LIG4	100	79.605	Sarcophilus_harrisii
ENSBTAG00000015868	LIG4	100	64.738	ENSSFOG00015012835	lig4	100	64.738	Scleropages_formosus
ENSBTAG00000015868	LIG4	99	63.234	ENSSMAG00000011267	lig4	99	63.234	Scophthalmus_maximus
ENSBTAG00000015868	LIG4	99	65.854	ENSSDUG00000010343	lig4	98	65.854	Seriola_dumerili
ENSBTAG00000015868	LIG4	99	64.066	ENSSLDG00000003239	lig4	99	64.066	Seriola_lalandi_dorsalis
ENSBTAG00000015868	LIG4	100	84.026	ENSSARG00000006573	LIG4	100	84.026	Sorex_araneus
ENSBTAG00000015868	LIG4	93	76.066	ENSSPUG00000002444	LIG4	100	76.066	Sphenodon_punctatus
ENSBTAG00000015868	LIG4	99	65.132	ENSSPAG00000001609	lig4	99	65.132	Stegastes_partitus
ENSBTAG00000015868	LIG4	100	89.133	ENSSSCG00000009540	LIG4	100	89.133	Sus_scrofa
ENSBTAG00000015868	LIG4	99	74.336	ENSTGUG00000010795	LIG4	99	74.336	Taeniopygia_guttata
ENSBTAG00000015868	LIG4	99	65.055	ENSTRUG00000009984	lig4	99	65.055	Takifugu_rubripes
ENSBTAG00000015868	LIG4	99	65.495	ENSTNIG00000010348	lig4	99	65.714	Tetraodon_nigroviridis
ENSBTAG00000015868	LIG4	100	88.035	ENSTBEG00000017741	LIG4	100	88.035	Tupaia_belangeri
ENSBTAG00000015868	LIG4	100	91.218	ENSTTRG00000012660	LIG4	100	91.218	Tursiops_truncatus
ENSBTAG00000015868	LIG4	100	88.145	ENSUAMG00000003773	LIG4	100	88.145	Ursus_americanus
ENSBTAG00000015868	LIG4	99	72.357	ENSXETG00000002654	lig4	99	72.357	Xenopus_tropicalis
ENSBTAG00000015868	LIG4	99	64.850	ENSXCOG00000017401	lig4	99	64.396	Xiphophorus_couchianus
ENSBTAG00000015868	LIG4	99	65.333	ENSXMAG00000015142	lig4	99	64.874	Xiphophorus_maculatus