EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000016174 (Gene tree)
Gene ID: 497013
Gene Symbol: NCL
Alias: -
Full Name: Bos taurus nucleolin (NCL)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 9953 bases
Position: chr2:119226977-119236929
Accession: NM_001206660
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000063060	RRM_1	PF00076.22	4.9e-59	1	4
ENSBTAP00000063060	RRM_1	PF00076.22	4.9e-59	2	4
ENSBTAP00000063060	RRM_1	PF00076.22	4.9e-59	3	4
ENSBTAP00000063060	RRM_1	PF00076.22	4.9e-59	4	4
ENSBTAP00000021529	RRM_1	PF00076.22	5.8e-59	1	4
ENSBTAP00000021529	RRM_1	PF00076.22	5.8e-59	2	4
ENSBTAP00000021529	RRM_1	PF00076.22	5.8e-59	3	4
ENSBTAP00000021529	RRM_1	PF00076.22	5.8e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000021529	-	2745	-	ENSBTAP00000021529	720 (aa)	-	E1B8K6
ENSBTAT00000086889	-	2091	-	ENSBTAP00000063060	696 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000016174's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000016174's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000016174	NCL	92	92.623	ENSBTAG00000050728	-	89	92.623
ENSBTAG00000016174	NCL	60	92.857	ENSBTAG00000051320	-	83	92.488
ENSBTAG00000016174	NCL	78	96.203	ENSBTAG00000026909	-	98	96.203

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000016174	NCL	64	92.152	ENSG00000115053	NCL	100	89.865	Homo_sapiens
ENSBTAG00000016174	NCL	61	98.405	ENSAMEG00000016289	NCL	94	86.988	Ailuropoda_melanoleuca
ENSBTAG00000016174	NCL	54	96.570	ENSANAG00000035814	-	94	85.109	Aotus_nancymaae
ENSBTAG00000016174	NCL	99	67.882	ENSANAG00000024378	-	90	79.381	Aotus_nancymaae
ENSBTAG00000016174	NCL	54	96.570	ENSCJAG00000013538	NCL	93	84.964	Callithrix_jacchus
ENSBTAG00000016174	NCL	100	90.193	ENSCAFG00000011037	NCL	94	87.573	Canis_familiaris
ENSBTAG00000016174	NCL	87	89.198	ENSCAFG00020023145	NCL	97	87.722	Canis_lupus_dingo
ENSBTAG00000016174	NCL	92	86.384	ENSCHIG00000026149	-	93	87.141	Capra_hircus
ENSBTAG00000016174	NCL	96	96.274	ENSCHIG00000010894	-	100	97.019	Capra_hircus
ENSBTAG00000016174	NCL	74	98.673	ENSCHIG00000021052	-	94	97.909	Capra_hircus
ENSBTAG00000016174	NCL	90	79.516	ENSCHIG00000012143	-	94	77.151	Capra_hircus
ENSBTAG00000016174	NCL	90	68.105	ENSTSYG00000036886	-	85	80.000	Carlito_syrichta
ENSBTAG00000016174	NCL	95	85.026	ENSTSYG00000029779	-	98	82.765	Carlito_syrichta
ENSBTAG00000016174	NCL	92	86.377	ENSTSYG00000004355	-	94	84.831	Carlito_syrichta
ENSBTAG00000016174	NCL	61	89.749	ENSCAPG00000009405	NCL	95	76.087	Cavia_aperea
ENSBTAG00000016174	NCL	54	93.140	ENSCPOG00000001034	NCL	94	79.420	Cavia_porcellus
ENSBTAG00000016174	NCL	54	96.570	ENSCCAG00000021040	-	94	84.875	Cebus_capucinus
ENSBTAG00000016174	NCL	92	87.087	ENSCATG00000037033	NCL	94	85.714	Cercocebus_atys
ENSBTAG00000016174	NCL	92	81.737	ENSCLAG00000013080	NCL	94	79.826	Chinchilla_lanigera
ENSBTAG00000016174	NCL	63	96.136	ENSCSAG00000006660	NCL	95	97.273	Chlorocebus_sabaeus
ENSBTAG00000016174	NCL	64	74.944	ENSCHOG00000012860	NCL	99	71.709	Choloepus_hoffmanni
ENSBTAG00000016174	NCL	92	79.429	ENSCGRG00001024315	-	94	75.181	Cricetulus_griseus_chok1gshd
ENSBTAG00000016174	NCL	91	67.267	ENSCGRG00001022350	-	93	63.516	Cricetulus_griseus_chok1gshd
ENSBTAG00000016174	NCL	88	79.615	ENSCGRG00000017894	-	97	76.744	Cricetulus_griseus_crigri
ENSBTAG00000016174	NCL	92	66.617	ENSCGRG00000000507	-	63	74.318	Cricetulus_griseus_crigri
ENSBTAG00000016174	NCL	100	75.000	ENSDNOG00000046347	-	99	74.862	Dasypus_novemcinctus
ENSBTAG00000016174	NCL	92	85.843	ENSDNOG00000010783	-	94	85.652	Dasypus_novemcinctus
ENSBTAG00000016174	NCL	54	84.433	ENSDORG00000012513	-	94	74.265	Dipodomys_ordii
ENSBTAG00000016174	NCL	53	73.497	ENSDORG00000023596	-	92	68.134	Dipodomys_ordii
ENSBTAG00000016174	NCL	55	91.053	ENSETEG00000018937	-	94	78.088	Echinops_telfairi
ENSBTAG00000016174	NCL	54	90.451	ENSETEG00000014756	-	100	87.045	Echinops_telfairi
ENSBTAG00000016174	NCL	70	66.667	ENSETEG00000008139	-	82	66.486	Echinops_telfairi
ENSBTAG00000016174	NCL	63	61.086	ENSETEG00000008553	-	99	58.893	Echinops_telfairi
ENSBTAG00000016174	NCL	98	90.113	ENSEASG00005008488	NCL	96	86.842	Equus_asinus_asinus
ENSBTAG00000016174	NCL	92	89.759	ENSECAG00000021868	NCL	94	87.281	Equus_caballus
ENSBTAG00000016174	NCL	54	90.765	ENSEEUG00000005913	NCL	94	78.686	Erinaceus_europaeus
ENSBTAG00000016174	NCL	100	90.331	ENSFCAG00000027622	NCL	94	87.865	Felis_catus
ENSBTAG00000016174	NCL	91	83.560	ENSFDAG00000014291	NCL	94	80.116	Fukomys_damarensis
ENSBTAG00000016174	NCL	92	83.634	ENSGGOG00000004300	NCL	93	84.783	Gorilla_gorilla
ENSBTAG00000016174	NCL	53	82.727	ENSHGLG00000005133	-	99	73.776	Heterocephalus_glaber_female
ENSBTAG00000016174	NCL	52	85.904	ENSHGLG00000011069	-	70	77.426	Heterocephalus_glaber_female
ENSBTAG00000016174	NCL	54	94.459	ENSHGLG00000002031	-	94	78.551	Heterocephalus_glaber_female
ENSBTAG00000016174	NCL	54	94.195	ENSHGLG00100014537	-	93	77.971	Heterocephalus_glaber_male
ENSBTAG00000016174	NCL	91	64.242	ENSHGLG00100000745	-	83	82.110	Heterocephalus_glaber_male
ENSBTAG00000016174	NCL	63	82.380	ENSJJAG00000016165	Ncl	94	75.668	Jaculus_jaculus
ENSBTAG00000016174	NCL	91	72.576	ENSLAFG00000013061	NCL	88	83.505	Loxodonta_africana
ENSBTAG00000016174	NCL	92	86.937	ENSMFAG00000040385	NCL	94	85.714	Macaca_fascicularis
ENSBTAG00000016174	NCL	92	86.937	ENSMMUG00000018094	NCL	94	85.714	Macaca_mulatta
ENSBTAG00000016174	NCL	58	97.727	ENSMNEG00000023839	NCL	93	82.500	Macaca_nemestrina
ENSBTAG00000016174	NCL	92	87.237	ENSMLEG00000028935	NCL	94	85.860	Mandrillus_leucophaeus
ENSBTAG00000016174	NCL	100	86.088	ENSMICG00000002538	-	94	82.362	Microcebus_murinus
ENSBTAG00000016174	NCL	92	68.778	ENSMICG00000029975	-	86	78.824	Microcebus_murinus
ENSBTAG00000016174	NCL	92	76.992	MGP_CAROLIEiJ_G0014362	Ncl	69	81.605	Mus_caroli
ENSBTAG00000016174	NCL	92	76.541	ENSMUSG00000026234	Ncl	69	81.213	Mus_musculus
ENSBTAG00000016174	NCL	92	76.090	MGP_PahariEiJ_G0027599	Ncl	94	73.615	Mus_pahari
ENSBTAG00000016174	NCL	92	76.842	MGP_SPRETEiJ_G0015164	Ncl	69	81.018	Mus_spretus
ENSBTAG00000016174	NCL	92	85.970	ENSMLUG00000014547	NCL	94	85.944	Myotis_lucifugus
ENSBTAG00000016174	NCL	71	73.087	ENSNGAG00000006188	-	54	73.087	Nannospalax_galili
ENSBTAG00000016174	NCL	92	77.219	ENSNGAG00000002454	-	94	73.517	Nannospalax_galili
ENSBTAG00000016174	NCL	89	74.234	ENSNLEG00000014107	-	69	78.961	Nomascus_leucogenys
ENSBTAG00000016174	NCL	62	84.322	ENSODEG00000002441	-	86	84.322	Octodon_degus
ENSBTAG00000016174	NCL	69	71.667	ENSODEG00000007803	-	94	63.790	Octodon_degus
ENSBTAG00000016174	NCL	61	90.661	ENSODEG00000003281	-	100	77.641	Octodon_degus
ENSBTAG00000016174	NCL	72	90.451	ENSODEG00000002748	-	74	80.396	Octodon_degus
ENSBTAG00000016174	NCL	72	87.335	ENSOGAG00000027852	NCL	77	87.335	Otolemur_garnettii
ENSBTAG00000016174	NCL	91	89.378	ENSOARG00000020709	-	92	89.378	Ovis_aries
ENSBTAG00000016174	NCL	88	80.163	ENSOARG00000013710	-	94	80.976	Ovis_aries
ENSBTAG00000016174	NCL	92	73.364	ENSOARG00000004072	-	92	71.707	Ovis_aries
ENSBTAG00000016174	NCL	76	90.625	ENSOARG00000013270	-	100	94.505	Ovis_aries
ENSBTAG00000016174	NCL	64	92.377	ENSPPAG00000011619	NCL	94	82.507	Pan_paniscus
ENSBTAG00000016174	NCL	100	90.193	ENSPPRG00000012603	NCL	94	87.573	Panthera_pardus
ENSBTAG00000016174	NCL	91	89.210	ENSPTIG00000010393	NCL	94	87.135	Panthera_tigris_altaica
ENSBTAG00000016174	NCL	92	83.333	ENSPTRG00000013025	NCL	93	84.783	Pan_troglodytes
ENSBTAG00000016174	NCL	92	86.937	ENSPANG00000010292	NCL	94	85.714	Papio_anubis
ENSBTAG00000016174	NCL	70	84.843	ENSPPYG00000013265	NCL	94	76.522	Pongo_abelii
ENSBTAG00000016174	NCL	92	86.248	ENSPCOG00000003051	-	70	89.669	Propithecus_coquereli
ENSBTAG00000016174	NCL	91	80.213	ENSPCOG00000004160	-	94	78.939	Propithecus_coquereli
ENSBTAG00000016174	NCL	92	87.874	ENSPVAG00000000297	NCL	94	85.465	Pteropus_vampyrus
ENSBTAG00000016174	NCL	92	79.217	ENSRNOG00000018273	Ncl	94	78.509	Rattus_norvegicus
ENSBTAG00000016174	NCL	92	83.182	ENSRBIG00000037525	-	72	87.867	Rhinopithecus_bieti
ENSBTAG00000016174	NCL	65	96.540	ENSRBIG00000035396	-	81	94.631	Rhinopithecus_bieti
ENSBTAG00000016174	NCL	92	86.787	ENSRROG00000028756	-	94	85.277	Rhinopithecus_roxellana
ENSBTAG00000016174	NCL	99	84.041	ENSRROG00000036103	-	99	85.096	Rhinopithecus_roxellana
ENSBTAG00000016174	NCL	70	85.827	ENSSBOG00000027549	-	94	89.294	Saimiri_boliviensis_boliviensis
ENSBTAG00000016174	NCL	54	96.306	ENSSBOG00000029193	-	94	83.965	Saimiri_boliviensis_boliviensis
ENSBTAG00000016174	NCL	54	74.429	ENSSBOG00000023094	-	77	74.227	Saimiri_boliviensis_boliviensis
ENSBTAG00000016174	NCL	92	88.156	ENSSSCG00000016275	NCL	94	85.610	Sus_scrofa
ENSBTAG00000016174	NCL	69	77.027	ENSTBEG00000002469	-	66	80.857	Tupaia_belangeri
ENSBTAG00000016174	NCL	57	83.905	ENSTBEG00000001546	-	94	78.592	Tupaia_belangeri
ENSBTAG00000016174	NCL	92	86.596	ENSTTRG00000009094	NCL	94	84.234	Tursiops_truncatus
ENSBTAG00000016174	NCL	73	92.961	ENSUAMG00000005639	NCL	100	95.464	Ursus_americanus
ENSBTAG00000016174	NCL	61	98.633	ENSUMAG00000015789	NCL	94	87.281	Ursus_maritimus
ENSBTAG00000016174	NCL	68	88.028	ENSVPAG00000001796	NCL	69	88.028	Vicugna_pacos
ENSBTAG00000016174	NCL	100	87.155	ENSVVUG00000025564	NCL	100	87.155	Vulpes_vulpes