EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000017061 (Gene tree)
Gene ID: 530506
Gene Symbol: SMARCAD1
Alias: -
Full Name: Bos taurus SWI/SNF-related%2C matrix-associated actin-dependent regulator of chromatin%2C subfamily a%2C containing DEAD/H box 1 (SMARCAD1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 90724 bases
Position: chr6:30308257-30398980
Accession: NM_001205432
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000045084	ResIII	PF04851.15	2.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000086014	-	1776	-	ENSBTAP00000067713	74 (aa)	-	-
ENSBTAT00000047936	-	4968	XM_005207731	ENSBTAP00000045084	1029 (aa)	XP_005207788	E1B7X9
ENSBTAT00000067445	-	1253	-	ENSBTAP00000071381	74 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000017061's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000017061's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000017061	SMARCAD1	50	36.762	ENSBTAG00000017776	CHD2	56	36.762
ENSBTAG00000017061	SMARCAD1	51	35.810	ENSBTAG00000020831	CHD1L	51	35.810
ENSBTAG00000017061	SMARCAD1	51	37.251	ENSBTAG00000005979	HELLS	80	37.251

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000017061	SMARCAD1	100	96.696	ENSG00000163104	SMARCAD1	100	97.993	Homo_sapiens
ENSBTAG00000017061	SMARCAD1	100	97.184	ENSAMEG00000005844	SMARCAD1	100	97.184	Ailuropoda_melanoleuca
ENSBTAG00000017061	SMARCAD1	68	67.963	ENSACIG00000018326	smarcad1a	100	67.963	Amphilophus_citrinellus
ENSBTAG00000017061	SMARCAD1	100	62.465	ENSAOCG00000019762	smarcad1a	96	62.465	Amphiprion_ocellaris
ENSBTAG00000017061	SMARCAD1	100	62.606	ENSAPEG00000003889	smarcad1a	96	62.170	Amphiprion_percula
ENSBTAG00000017061	SMARCAD1	87	62.465	ENSATEG00000015608	smarcad1a	93	62.465	Anabas_testudineus
ENSBTAG00000017061	SMARCAD1	94	71.605	ENSAPLG00000004630	SMARCAD1	100	72.325	Anas_platyrhynchos
ENSBTAG00000017061	SMARCAD1	100	69.981	ENSACAG00000013554	SMARCAD1	100	70.503	Anolis_carolinensis
ENSBTAG00000017061	SMARCAD1	100	96.307	ENSANAG00000020488	SMARCAD1	100	96.307	Aotus_nancymaae
ENSBTAG00000017061	SMARCAD1	98	62.074	ENSACLG00000017063	smarcad1a	98	60.876	Astatotilapia_calliptera
ENSBTAG00000017061	SMARCAD1	70	60.083	ENSAMXG00000015470	smarcad1a	99	60.083	Astyanax_mexicanus
ENSBTAG00000017061	SMARCAD1	78	58.780	ENSAMXG00000019130	smarcad1b	85	59.800	Astyanax_mexicanus
ENSBTAG00000017061	SMARCAD1	61	42.476	WBGene00010845	M03C11.8	63	42.457	Caenorhabditis_elegans
ENSBTAG00000017061	SMARCAD1	100	96.404	ENSCJAG00000006778	SMARCAD1	100	96.404	Callithrix_jacchus
ENSBTAG00000017061	SMARCAD1	100	96.699	ENSCAFG00000010026	SMARCAD1	100	96.699	Canis_familiaris
ENSBTAG00000017061	SMARCAD1	87	97.309	ENSCAFG00020003994	SMARCAD1	100	97.309	Canis_lupus_dingo
ENSBTAG00000017061	SMARCAD1	100	99.320	ENSCHIG00000012905	SMARCAD1	100	99.320	Capra_hircus
ENSBTAG00000017061	SMARCAD1	100	96.113	ENSTSYG00000002706	SMARCAD1	100	96.113	Carlito_syrichta
ENSBTAG00000017061	SMARCAD1	90	77.063	ENSCAPG00000016744	SMARCAD1	96	77.229	Cavia_aperea
ENSBTAG00000017061	SMARCAD1	100	92.560	ENSCPOG00000011398	SMARCAD1	100	92.560	Cavia_porcellus
ENSBTAG00000017061	SMARCAD1	100	96.113	ENSCCAG00000022264	SMARCAD1	100	97.659	Cebus_capucinus
ENSBTAG00000017061	SMARCAD1	100	96.501	ENSCATG00000035663	SMARCAD1	100	96.501	Cercocebus_atys
ENSBTAG00000017061	SMARCAD1	82	97.150	ENSCSAG00000004186	SMARCAD1	100	97.150	Chlorocebus_sabaeus
ENSBTAG00000017061	SMARCAD1	100	73.563	ENSCPBG00000013203	SMARCAD1	100	74.138	Chrysemys_picta_bellii
ENSBTAG00000017061	SMARCAD1	64	49.475	ENSCING00000001688	-	99	49.475	Ciona_intestinalis
ENSBTAG00000017061	SMARCAD1	100	96.307	ENSCANG00000003556	SMARCAD1	100	97.993	Colobus_angolensis_palliatus
ENSBTAG00000017061	SMARCAD1	100	92.517	ENSCGRG00001015056	Smarcad1	100	92.517	Cricetulus_griseus_chok1gshd
ENSBTAG00000017061	SMARCAD1	100	92.517	ENSCGRG00000014087	Smarcad1	100	92.517	Cricetulus_griseus_crigri
ENSBTAG00000017061	SMARCAD1	96	60.372	ENSCSEG00000014419	-	91	58.743	Cynoglossus_semilaevis
ENSBTAG00000017061	SMARCAD1	100	60.426	ENSCSEG00000017903	smarcad1a	100	46.526	Cynoglossus_semilaevis
ENSBTAG00000017061	SMARCAD1	85	53.954	ENSDARG00000014041	smarcad1a	92	55.116	Danio_rerio
ENSBTAG00000017061	SMARCAD1	78	57.772	ENSDARG00000073721	smarcad1b	82	58.965	Danio_rerio
ENSBTAG00000017061	SMARCAD1	100	95.238	ENSDNOG00000000806	-	100	95.238	Dasypus_novemcinctus
ENSBTAG00000017061	SMARCAD1	100	91.667	ENSDORG00000012331	Smarcad1	100	91.667	Dipodomys_ordii
ENSBTAG00000017061	SMARCAD1	63	45.077	FBgn0032157	Etl1	85	42.779	Drosophila_melanogaster
ENSBTAG00000017061	SMARCAD1	62	44.954	ENSEBUG00000003969	smarcad1a	96	45.557	Eptatretus_burgeri
ENSBTAG00000017061	SMARCAD1	100	97.282	ENSEASG00005012382	SMARCAD1	100	97.282	Equus_asinus_asinus
ENSBTAG00000017061	SMARCAD1	100	97.282	ENSECAG00000011562	SMARCAD1	100	97.282	Equus_caballus
ENSBTAG00000017061	SMARCAD1	79	56.348	ENSELUG00000019154	smarcad1b	79	58.673	Esox_lucius
ENSBTAG00000017061	SMARCAD1	100	52.271	ENSELUG00000018535	smarcad1a	100	51.574	Esox_lucius
ENSBTAG00000017061	SMARCAD1	100	96.793	ENSFCAG00000003958	SMARCAD1	100	98.328	Felis_catus
ENSBTAG00000017061	SMARCAD1	100	67.115	ENSFALG00000006089	SMARCAD1	100	66.923	Ficedula_albicollis
ENSBTAG00000017061	SMARCAD1	100	93.975	ENSFDAG00000017027	SMARCAD1	100	93.975	Fukomys_damarensis
ENSBTAG00000017061	SMARCAD1	65	64.978	ENSFHEG00000012778	smarcad1a	65	62.170	Fundulus_heteroclitus
ENSBTAG00000017061	SMARCAD1	84	58.046	ENSGMOG00000018995	smarcad1a	97	57.471	Gadus_morhua
ENSBTAG00000017061	SMARCAD1	77	73.518	ENSGALG00000037339	SMARCAD1	94	74.140	Gallus_gallus
ENSBTAG00000017061	SMARCAD1	90	66.457	ENSGAFG00000013498	smarcad1a	60	66.457	Gambusia_affinis
ENSBTAG00000017061	SMARCAD1	85	57.919	ENSGACG00000007327	smarcad1a	99	58.258	Gasterosteus_aculeatus
ENSBTAG00000017061	SMARCAD1	100	73.538	ENSGAGG00000008582	SMARCAD1	100	73.917	Gopherus_agassizii
ENSBTAG00000017061	SMARCAD1	100	96.696	ENSGGOG00000023001	SMARCAD1	100	96.696	Gorilla_gorilla
ENSBTAG00000017061	SMARCAD1	98	61.918	ENSHBUG00000011042	smarcad1a	96	61.918	Haplochromis_burtoni
ENSBTAG00000017061	SMARCAD1	100	94.186	ENSHGLG00000005070	SMARCAD1	100	94.186	Heterocephalus_glaber_female
ENSBTAG00000017061	SMARCAD1	100	94.186	ENSHGLG00100006812	SMARCAD1	100	94.186	Heterocephalus_glaber_male
ENSBTAG00000017061	SMARCAD1	99	63.411	ENSHCOG00000007848	smarcad1a	97	60.056	Hippocampus_comes
ENSBTAG00000017061	SMARCAD1	81	56.940	ENSIPUG00000022817	smarcad1b	89	57.007	Ictalurus_punctatus
ENSBTAG00000017061	SMARCAD1	78	64.743	ENSIPUG00000000242	smarcad1a	93	60.333	Ictalurus_punctatus
ENSBTAG00000017061	SMARCAD1	100	95.534	ENSSTOG00000001227	SMARCAD1	100	95.534	Ictidomys_tridecemlineatus
ENSBTAG00000017061	SMARCAD1	100	94.072	ENSJJAG00000022342	Smarcad1	100	94.072	Jaculus_jaculus
ENSBTAG00000017061	SMARCAD1	64	64.006	ENSKMAG00000021351	smarcad1a	66	60.694	Kryptolebias_marmoratus
ENSBTAG00000017061	SMARCAD1	65	65.327	ENSLBEG00000008088	smarcad1a	63	65.327	Labrus_bergylta
ENSBTAG00000017061	SMARCAD1	100	53.595	ENSLOCG00000012909	smarcad1a	100	55.556	Lepisosteus_oculatus
ENSBTAG00000017061	SMARCAD1	100	94.266	ENSLAFG00000000040	SMARCAD1	100	94.266	Loxodonta_africana
ENSBTAG00000017061	SMARCAD1	100	96.307	ENSMFAG00000042606	SMARCAD1	100	96.749	Macaca_fascicularis
ENSBTAG00000017061	SMARCAD1	87	96.749	ENSMMUG00000022242	SMARCAD1	100	96.749	Macaca_mulatta
ENSBTAG00000017061	SMARCAD1	100	96.210	ENSMNEG00000038117	SMARCAD1	100	97.826	Macaca_nemestrina
ENSBTAG00000017061	SMARCAD1	100	96.404	ENSMLEG00000038333	SMARCAD1	100	97.993	Mandrillus_leucophaeus
ENSBTAG00000017061	SMARCAD1	69	62.829	ENSMAMG00000000933	smarcad1a	68	62.656	Mastacembelus_armatus
ENSBTAG00000017061	SMARCAD1	98	62.074	ENSMZEG00005005203	smarcad1a	100	49.316	Maylandia_zebra
ENSBTAG00000017061	SMARCAD1	94	65.128	ENSMGAG00000005577	SMARCAD1	100	65.128	Meleagris_gallopavo
ENSBTAG00000017061	SMARCAD1	100	92.225	ENSMAUG00000008417	Smarcad1	100	92.225	Mesocricetus_auratus
ENSBTAG00000017061	SMARCAD1	100	95.627	ENSMICG00000009746	SMARCAD1	100	95.627	Microcebus_murinus
ENSBTAG00000017061	SMARCAD1	100	91.351	ENSMOCG00000017142	Smarcad1	100	91.351	Microtus_ochrogaster
ENSBTAG00000017061	SMARCAD1	77	58.344	ENSMMOG00000000275	smarcad1a	92	64.190	Mola_mola
ENSBTAG00000017061	SMARCAD1	100	80.943	ENSMODG00000019268	SMARCAD1	100	80.943	Monodelphis_domestica
ENSBTAG00000017061	SMARCAD1	94	92.697	MGP_CAROLIEiJ_G0028458	-	77	92.697	Mus_caroli
ENSBTAG00000017061	SMARCAD1	100	91.165	ENSMUSG00000029920	Smarcad1	100	91.165	Mus_musculus
ENSBTAG00000017061	SMARCAD1	100	91.068	MGP_PahariEiJ_G0022198	Smarcad1	100	91.068	Mus_pahari
ENSBTAG00000017061	SMARCAD1	100	91.262	MGP_SPRETEiJ_G0029462	Smarcad1	100	91.262	Mus_spretus
ENSBTAG00000017061	SMARCAD1	100	97.184	ENSMPUG00000002111	SMARCAD1	100	97.184	Mustela_putorius_furo
ENSBTAG00000017061	SMARCAD1	100	93.392	ENSMLUG00000000425	SMARCAD1	100	93.392	Myotis_lucifugus
ENSBTAG00000017061	SMARCAD1	100	92.809	ENSNGAG00000000810	Smarcad1	100	92.809	Nannospalax_galili
ENSBTAG00000017061	SMARCAD1	66	62.794	ENSNBRG00000012749	smarcad1a	85	60.924	Neolamprologus_brichardi
ENSBTAG00000017061	SMARCAD1	100	96.696	ENSNLEG00000014225	SMARCAD1	100	97.993	Nomascus_leucogenys
ENSBTAG00000017061	SMARCAD1	100	92.829	ENSODEG00000004334	SMARCAD1	100	92.829	Octodon_degus
ENSBTAG00000017061	SMARCAD1	63	65.895	ENSONIG00000015059	smarcad1a	100	51.977	Oreochromis_niloticus
ENSBTAG00000017061	SMARCAD1	80	84.662	ENSOANG00000013764	SMARCAD1	100	84.662	Ornithorhynchus_anatinus
ENSBTAG00000017061	SMARCAD1	100	95.530	ENSOCUG00000017283	SMARCAD1	100	95.530	Oryctolagus_cuniculus
ENSBTAG00000017061	SMARCAD1	65	65.165	ENSORLG00000004869	smarcad1a	68	61.433	Oryzias_latipes
ENSBTAG00000017061	SMARCAD1	65	65.165	ENSORLG00020020569	smarcad1a	68	61.401	Oryzias_latipes_hni
ENSBTAG00000017061	SMARCAD1	65	65.015	ENSORLG00015009045	smarcad1a	68	61.379	Oryzias_latipes_hsok
ENSBTAG00000017061	SMARCAD1	65	64.768	ENSOMEG00000023032	smarcad1a	68	60.905	Oryzias_melastigma
ENSBTAG00000017061	SMARCAD1	100	94.849	ENSOGAG00000011444	SMARCAD1	100	94.849	Otolemur_garnettii
ENSBTAG00000017061	SMARCAD1	100	99.126	ENSOARG00000017851	SMARCAD1	100	99.126	Ovis_aries
ENSBTAG00000017061	SMARCAD1	100	96.599	ENSPPAG00000035715	SMARCAD1	100	96.599	Pan_paniscus
ENSBTAG00000017061	SMARCAD1	100	96.890	ENSPPRG00000024756	SMARCAD1	100	98.328	Panthera_pardus
ENSBTAG00000017061	SMARCAD1	100	96.987	ENSPTIG00000017868	SMARCAD1	100	96.987	Panthera_tigris_altaica
ENSBTAG00000017061	SMARCAD1	100	96.696	ENSPTRG00000023126	SMARCAD1	100	97.993	Pan_troglodytes
ENSBTAG00000017061	SMARCAD1	100	95.058	ENSPANG00000019757	SMARCAD1	100	95.058	Papio_anubis
ENSBTAG00000017061	SMARCAD1	100	72.970	ENSPSIG00000010255	SMARCAD1	100	73.066	Pelodiscus_sinensis
ENSBTAG00000017061	SMARCAD1	62	64.031	ENSPMGG00000010735	smarcad1a	95	62.537	Periophthalmus_magnuspinnatus
ENSBTAG00000017061	SMARCAD1	100	77.648	ENSPEMG00000001854	Smarcad1	100	77.843	Peromyscus_maniculatus_bairdii
ENSBTAG00000017061	SMARCAD1	84	51.635	ENSPMAG00000003516	smarcad1a	99	47.059	Petromyzon_marinus
ENSBTAG00000017061	SMARCAD1	77	87.011	ENSPCIG00000008137	SMARCAD1	98	88.219	Phascolarctos_cinereus
ENSBTAG00000017061	SMARCAD1	62	66.252	ENSPFOG00000019116	smarcad1a	64	61.978	Poecilia_formosa
ENSBTAG00000017061	SMARCAD1	62	66.096	ENSPLAG00000000108	smarcad1a	64	61.838	Poecilia_latipinna
ENSBTAG00000017061	SMARCAD1	62	66.252	ENSPMEG00000009155	smarcad1a	64	61.978	Poecilia_mexicana
ENSBTAG00000017061	SMARCAD1	95	66.719	ENSPREG00000018185	smarcad1a	94	62.275	Poecilia_reticulata
ENSBTAG00000017061	SMARCAD1	100	96.307	ENSPPYG00000014935	SMARCAD1	100	96.307	Pongo_abelii
ENSBTAG00000017061	SMARCAD1	73	96.110	ENSPCOG00000020478	SMARCAD1	91	96.110	Propithecus_coquereli
ENSBTAG00000017061	SMARCAD1	100	94.947	ENSPVAG00000001760	SMARCAD1	100	94.947	Pteropus_vampyrus
ENSBTAG00000017061	SMARCAD1	67	61.705	ENSPNYG00000010087	smarcad1a	85	60.504	Pundamilia_nyererei
ENSBTAG00000017061	SMARCAD1	84	55.172	ENSPNAG00000001663	smarcad1a	90	54.417	Pygocentrus_nattereri
ENSBTAG00000017061	SMARCAD1	78	58.516	ENSPNAG00000010099	smarcad1b	84	59.774	Pygocentrus_nattereri
ENSBTAG00000017061	SMARCAD1	100	92.136	ENSRNOG00000006391	Smarcad1	100	92.136	Rattus_norvegicus
ENSBTAG00000017061	SMARCAD1	100	96.307	ENSRBIG00000041989	SMARCAD1	100	96.307	Rhinopithecus_bieti
ENSBTAG00000017061	SMARCAD1	100	96.307	ENSRROG00000035309	SMARCAD1	100	96.307	Rhinopithecus_roxellana
ENSBTAG00000017061	SMARCAD1	100	96.113	ENSSBOG00000032114	SMARCAD1	100	97.659	Saimiri_boliviensis_boliviensis
ENSBTAG00000017061	SMARCAD1	100	81.906	ENSSHAG00000001279	SMARCAD1	100	82.002	Sarcophilus_harrisii
ENSBTAG00000017061	SMARCAD1	100	50.327	ENSSFOG00015016814	smarcad1b	100	50.417	Scleropages_formosus
ENSBTAG00000017061	SMARCAD1	74	57.235	ENSSFOG00015020909	smarcad1a	100	57.235	Scleropages_formosus
ENSBTAG00000017061	SMARCAD1	68	63.508	ENSSMAG00000001326	smarcad1a	66	62.778	Scophthalmus_maximus
ENSBTAG00000017061	SMARCAD1	68	62.323	ENSSDUG00000022338	smarcad1a	84	61.892	Seriola_dumerili
ENSBTAG00000017061	SMARCAD1	62	65.785	ENSSLDG00000024986	smarcad1a	60	65.785	Seriola_lalandi_dorsalis
ENSBTAG00000017061	SMARCAD1	58	83.806	ENSSPUG00000004633	SMARCAD1	100	83.806	Sphenodon_punctatus
ENSBTAG00000017061	SMARCAD1	97	63.181	ENSSPAG00000001970	smarcad1a	96	62.117	Stegastes_partitus
ENSBTAG00000017061	SMARCAD1	100	97.573	ENSSSCG00000009193	SMARCAD1	100	98.221	Sus_scrofa
ENSBTAG00000017061	SMARCAD1	76	76.845	ENSTGUG00000003127	SMARCAD1	100	77.481	Taeniopygia_guttata
ENSBTAG00000017061	SMARCAD1	84	57.437	ENSTNIG00000017585	smarcad1a	99	57.763	Tetraodon_nigroviridis
ENSBTAG00000017061	SMARCAD1	91	97.024	ENSTBEG00000002789	SMARCAD1	91	97.024	Tupaia_belangeri
ENSBTAG00000017061	SMARCAD1	98	97.321	ENSTTRG00000000226	SMARCAD1	100	97.321	Tursiops_truncatus
ENSBTAG00000017061	SMARCAD1	100	97.087	ENSUAMG00000022262	SMARCAD1	99	98.241	Ursus_americanus
ENSBTAG00000017061	SMARCAD1	100	97.376	ENSUMAG00000004549	SMARCAD1	100	97.376	Ursus_maritimus
ENSBTAG00000017061	SMARCAD1	100	96.699	ENSVVUG00000007271	SMARCAD1	100	97.628	Vulpes_vulpes
ENSBTAG00000017061	SMARCAD1	84	65.834	ENSXETG00000019214	smarcad1	100	65.834	Xenopus_tropicalis
ENSBTAG00000017061	SMARCAD1	76	59.512	ENSXCOG00000005232	smarcad1a	88	57.638	Xiphophorus_couchianus
ENSBTAG00000017061	SMARCAD1	62	66.407	ENSXMAG00000015350	smarcad1a	89	61.925	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000018	regulation of DNA recombination	-	IEA	Process
GO:0000729	DNA double-strand break processing	-	ISS	Process
GO:0000792	heterochromatin	-	ISS	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0035861	site of double-strand break	-	ISS	Component
GO:0043044	ATP-dependent chromatin remodeling	-	ISS	Process
GO:0043596	nuclear replication fork	-	IEA	Component
GO:0051304	chromosome separation	-	ISS	Process
GO:0070932	histone H3 deacetylation	-	ISS	Process
GO:0070933	histone H4 deacetylation	-	ISS	Process